Wall clock time and date at job start Tue Mar 31 2020 07:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47285 * 2 1 4 4 C 1.52999 * 109.47085 * 119.99566 * 2 1 3 5 5 C 1.53003 * 109.46771 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.46760 * 180.02562 * 5 4 2 7 7 C 1.50690 * 109.47263 * 60.00499 * 5 4 2 8 8 O 1.21282 * 119.99800 * 300.05172 * 7 5 4 9 9 N 1.34780 * 120.00547 * 120.05418 * 7 5 4 10 10 C 1.47026 * 125.64196 * 4.71043 * 9 7 5 11 11 C 1.54337 * 107.26297 * 178.85213 * 10 9 7 12 12 C 1.55164 * 103.02055 * 338.14092 * 11 10 9 13 13 O 1.42895 * 111.00034 * 277.23579 * 12 11 10 14 14 C 1.50699 * 111.00299 * 153.38190 * 12 11 10 15 15 H 1.08004 * 119.99780 * 247.79968 * 14 12 11 16 16 C 1.37879 * 120.00089 * 67.80197 * 14 12 11 17 17 N 1.31514 * 119.99941 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99777 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47174 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47004 * 120.00292 * 18 16 14 21 21 H 1.48498 * 109.46838 * 240.00168 * 18 16 14 22 22 C 1.47424 * 125.65228 * 185.02331 * 9 7 5 23 23 C 1.52994 * 109.47346 * 299.99990 * 5 4 2 24 24 C 1.52999 * 109.47177 * 60.00258 * 23 5 4 25 25 H 1.08999 * 109.47133 * 59.99589 * 24 23 5 26 26 C 1.53001 * 109.47643 * 180.02562 * 24 23 5 27 27 C 1.52998 * 109.47085 * 299.99992 * 24 23 5 28 28 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47155 * 300.00131 * 1 2 3 30 30 H 1.08998 * 109.47460 * 60.00034 * 1 2 3 31 31 H 1.08992 * 109.47794 * 299.99980 * 4 2 1 32 32 H 1.08999 * 109.47133 * 60.00403 * 4 2 1 33 33 H 1.09000 * 109.87947 * 298.39568 * 10 9 7 34 34 H 1.08996 * 109.88411 * 59.56356 * 10 9 7 35 35 H 1.08993 * 110.85229 * 219.67368 * 11 10 9 36 36 H 1.08997 * 110.66796 * 96.51962 * 11 10 9 37 37 H 0.96705 * 114.00006 * 292.18860 * 13 12 11 38 38 H 0.96998 * 120.00061 * 179.97438 * 17 16 14 39 39 H 1.09005 * 110.36448 * 322.92272 * 22 9 7 40 40 H 1.08996 * 110.36705 * 85.13987 * 22 9 7 41 41 H 1.09008 * 109.47605 * 300.00048 * 23 5 4 42 42 H 1.09002 * 109.47679 * 180.02562 * 23 5 4 43 43 H 1.08990 * 109.47325 * 180.02562 * 26 24 23 44 44 H 1.08997 * 109.47106 * 300.00227 * 26 24 23 45 45 H 1.08999 * 109.47195 * 59.99623 * 26 24 23 46 46 H 1.09002 * 109.47490 * 300.00042 * 27 24 23 47 47 H 1.08998 * 109.47460 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 1 3.9333 -1.2359 2.1387 7 6 4.0728 0.6989 1.2486 8 8 3.7791 1.4459 0.3394 9 7 4.8490 1.1393 2.2586 10 6 5.3597 0.3194 3.3670 11 6 6.2201 1.2395 4.2587 12 6 6.6026 2.3977 3.2996 13 8 7.7286 2.0446 2.4937 14 6 6.8664 3.6684 4.0655 15 1 6.1951 4.5085 3.9653 16 6 7.9648 3.7586 4.8940 17 7 8.7826 2.7358 5.0155 18 14 8.2921 5.3341 5.8428 19 1 7.2323 6.3273 5.5338 20 1 8.2889 5.0445 7.2992 21 1 9.6150 5.8827 5.4500 22 6 5.3212 2.5243 2.4383 23 6 4.0795 -1.4433 -0.0003 24 6 3.5695 -0.7222 -1.2495 25 1 3.9331 0.3054 -1.2498 26 6 4.0784 -1.4442 -2.4988 27 6 2.0395 -0.7216 -1.2492 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6767 -0.2074 2.1392 32 1 1.6767 -1.7488 1.2493 33 1 4.5273 -0.0852 3.9428 34 1 5.9721 -0.4928 2.9757 35 1 7.1111 0.7182 4.6083 36 1 5.6380 1.6129 5.1011 37 1 8.5540 1.9539 2.9893 38 1 9.5555 2.7994 5.5981 39 1 5.5558 2.9734 1.4732 40 1 4.5692 3.1169 2.9590 41 1 3.7158 -2.4710 0.0000 42 1 5.1695 -1.4441 -0.0004 43 1 3.7154 -0.9301 -3.3887 44 1 5.1684 -1.4450 -2.4993 45 1 3.7144 -2.4716 -2.4983 46 1 1.6757 -1.7492 -1.2489 47 1 1.6761 -0.2075 -2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:00 Heat of formation + Delta-G solvation = -113.433481 kcal Electronic energy + Delta-G solvation = -25613.542304 eV Core-core repulsion = 22180.844541 eV Total energy + Delta-G solvation = -3432.697763 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41782 -38.26940 -36.57541 -34.30894 -33.35585 -32.16661 -32.04045 -29.66327 -28.30123 -26.53837 -26.26743 -25.38086 -23.12743 -21.77675 -20.40588 -20.23458 -19.59926 -18.29785 -17.24183 -16.39188 -15.53916 -15.23047 -15.00425 -14.86187 -14.42092 -14.15785 -13.85006 -13.72076 -13.35888 -12.99989 -12.64996 -12.42003 -12.31511 -12.15493 -11.97938 -11.75547 -11.73810 -11.64614 -11.57876 -11.35417 -11.33880 -11.08223 -10.91514 -10.63750 -10.52558 -10.48300 -10.44681 -10.04963 -9.91272 -9.87802 -9.42278 -8.83362 -8.68521 -8.21671 -7.91236 -6.32198 -4.39839 3.10221 3.16829 3.26114 3.30380 3.60367 4.24433 4.72485 4.75464 4.83620 4.94966 5.06753 5.18313 5.26038 5.41806 5.42498 5.55162 5.61270 5.66259 5.69728 5.72940 5.75517 5.84472 5.87241 5.90312 5.94401 5.96049 5.98223 6.02051 6.06113 6.17971 6.29079 6.34235 6.42732 6.44660 6.48823 6.64589 6.66484 6.80985 6.88323 7.01042 7.28746 7.31193 7.71587 7.97848 8.20306 8.62244 8.73169 9.29463 9.46529 10.75526 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.003807 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.799188 B = 7353.677369 C = 7638.897749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.095 4.095 5 C -0.105 4.105 6 H 0.084 0.916 7 C 0.529 3.471 8 O -0.544 6.544 9 N -0.607 5.607 10 C 0.101 3.899 11 C -0.140 4.140 12 C 0.249 3.751 13 O -0.584 6.584 14 C -0.535 4.535 15 H 0.066 0.934 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.118 3.882 23 C -0.096 4.096 24 C -0.108 4.108 25 H 0.103 0.897 26 C -0.144 4.144 27 C -0.095 4.095 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.385 0.615 38 H 0.269 0.731 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 -9.833 -5.917 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.121 0.879 4 C -0.133 4.133 5 C -0.127 4.127 6 H 0.102 0.898 7 C 0.318 3.682 8 O -0.424 6.424 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.178 4.178 12 C 0.208 3.792 13 O -0.394 6.394 14 C -0.573 4.573 15 H 0.084 0.916 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.003 4.003 23 C -0.134 4.134 24 C -0.126 4.126 25 H 0.121 0.879 26 C -0.202 4.202 27 C -0.132 4.132 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.021 -9.509 -6.828 16.078 hybrid contribution 0.750 0.599 1.280 1.600 sum -10.271 -8.910 -5.548 14.685 Atomic orbital electron populations 1.21821 0.96038 1.00985 1.01315 1.21428 0.94373 1.02733 0.94144 0.87940 1.21413 0.92516 1.00807 0.98532 1.21284 0.97302 0.93775 1.00315 0.89799 1.20130 0.78014 0.89290 0.80777 1.90502 1.58696 1.58235 1.34949 1.48677 1.48986 1.11853 1.24329 1.22137 0.96911 0.94913 0.88281 1.23205 0.98822 0.97827 0.97977 1.19572 0.82709 0.91324 0.85562 1.86103 1.20787 1.92534 1.39998 1.21539 1.10611 0.99630 1.25550 0.91610 1.24992 0.95383 0.96844 0.95790 1.69570 1.14917 1.30176 1.39131 0.86350 0.78399 0.82876 0.79298 1.19560 1.20806 1.20732 1.22358 0.95762 0.81503 1.00706 1.21417 1.00422 0.98368 0.93161 1.21417 0.95573 1.02280 0.93363 0.87934 1.21816 1.00803 0.99800 0.97754 1.21474 0.95089 0.99301 0.97363 0.93346 0.93081 0.92982 0.92071 0.91458 0.92957 0.92463 0.89935 0.91440 0.76294 0.92127 0.91119 0.91307 0.91503 0.91881 0.93001 0.92971 0.93365 0.93085 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.11 -1.41 2.42 -90.62 -0.22 -1.63 16 3 H 0.10 1.66 5.51 -51.93 -0.29 1.38 16 4 C -0.09 -1.18 4.72 -26.73 -0.13 -1.30 16 5 C -0.11 -1.48 2.91 -91.78 -0.27 -1.74 16 6 H 0.08 1.09 6.61 -51.93 -0.34 0.74 16 7 C 0.53 9.62 6.53 -10.99 -0.07 9.55 16 8 O -0.54 -11.07 11.58 5.56 0.06 -11.00 16 9 N -0.61 -11.86 3.33 -170.51 -0.57 -12.43 16 10 C 0.10 1.80 5.83 -3.05 -0.02 1.78 16 11 C -0.14 -2.95 5.64 -24.89 -0.14 -3.09 16 12 C 0.25 5.97 0.89 -89.62 -0.08 5.89 16 13 O -0.58 -14.99 13.18 -35.23 -0.46 -15.45 16 14 C -0.53 -13.81 8.25 -34.44 -0.28 -14.09 16 15 H 0.07 1.70 7.77 -52.48 -0.41 1.29 16 16 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 17 N -0.90 -22.92 10.79 55.43 0.60 -22.32 16 18 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.12 2.64 6.10 -2.53 -0.02 2.62 16 23 C -0.10 -1.25 4.72 -26.73 -0.13 -1.37 16 24 C -0.11 -1.45 2.42 -90.62 -0.22 -1.67 16 25 H 0.10 1.73 5.51 -51.93 -0.29 1.45 16 26 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 27 C -0.09 -1.15 4.48 -26.73 -0.12 -1.27 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.83 7.85 -51.93 -0.41 1.42 16 36 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 37 H 0.39 9.97 6.93 45.56 0.32 10.28 16 38 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 39 H 0.07 1.68 7.99 -51.93 -0.41 1.27 16 40 H 0.07 1.48 8.02 -51.93 -0.42 1.07 16 41 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -26.92 354.66 -8.85 -35.77 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.71 Total: 12.25 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.10 Total: -7.13 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.03 Total: -34.75 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.40 Total: -26.46 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.92 -8.85 -35.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.659 kcal (2) G-P(sol) polarization free energy of solvation -26.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds