Wall clock time and date at job start Tue Mar 31 2020 07:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47285 * 2 1 4 4 C 1.52999 * 109.47085 * 119.99566 * 2 1 3 5 5 C 1.53003 * 109.46771 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.46760 * 180.02562 * 5 4 2 7 7 C 1.50690 * 109.47263 * 60.00499 * 5 4 2 8 8 O 1.21282 * 119.99800 * 300.05172 * 7 5 4 9 9 N 1.34780 * 120.00547 * 120.05418 * 7 5 4 10 10 C 1.47026 * 125.64196 * 4.71043 * 9 7 5 11 11 C 1.54337 * 107.26297 * 178.85213 * 10 9 7 12 12 C 1.55164 * 103.02055 * 338.14092 * 11 10 9 13 13 O 1.42895 * 111.00034 * 277.23579 * 12 11 10 14 14 C 1.50699 * 111.00299 * 153.38190 * 12 11 10 15 15 H 1.08004 * 119.99780 * 247.79968 * 14 12 11 16 16 C 1.37879 * 120.00089 * 67.80197 * 14 12 11 17 17 N 1.31514 * 119.99941 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99777 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47174 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47004 * 120.00292 * 18 16 14 21 21 H 1.48498 * 109.46838 * 240.00168 * 18 16 14 22 22 C 1.47424 * 125.65228 * 185.02331 * 9 7 5 23 23 C 1.52994 * 109.47346 * 299.99990 * 5 4 2 24 24 C 1.52999 * 109.47177 * 60.00258 * 23 5 4 25 25 H 1.08999 * 109.47133 * 59.99589 * 24 23 5 26 26 C 1.53001 * 109.47643 * 180.02562 * 24 23 5 27 27 C 1.52998 * 109.47085 * 299.99992 * 24 23 5 28 28 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47155 * 300.00131 * 1 2 3 30 30 H 1.08998 * 109.47460 * 60.00034 * 1 2 3 31 31 H 1.08992 * 109.47794 * 299.99980 * 4 2 1 32 32 H 1.08999 * 109.47133 * 60.00403 * 4 2 1 33 33 H 1.09000 * 109.87947 * 298.39568 * 10 9 7 34 34 H 1.08996 * 109.88411 * 59.56356 * 10 9 7 35 35 H 1.08993 * 110.85229 * 219.67368 * 11 10 9 36 36 H 1.08997 * 110.66796 * 96.51962 * 11 10 9 37 37 H 0.96705 * 114.00006 * 292.18860 * 13 12 11 38 38 H 0.96998 * 120.00061 * 179.97438 * 17 16 14 39 39 H 1.09005 * 110.36448 * 322.92272 * 22 9 7 40 40 H 1.08996 * 110.36705 * 85.13987 * 22 9 7 41 41 H 1.09008 * 109.47605 * 300.00048 * 23 5 4 42 42 H 1.09002 * 109.47679 * 180.02562 * 23 5 4 43 43 H 1.08990 * 109.47325 * 180.02562 * 26 24 23 44 44 H 1.08997 * 109.47106 * 300.00227 * 26 24 23 45 45 H 1.08999 * 109.47195 * 59.99623 * 26 24 23 46 46 H 1.09002 * 109.47490 * 300.00042 * 27 24 23 47 47 H 1.08998 * 109.47460 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 1 3.9333 -1.2359 2.1387 7 6 4.0728 0.6989 1.2486 8 8 3.7791 1.4459 0.3394 9 7 4.8490 1.1393 2.2586 10 6 5.3597 0.3194 3.3670 11 6 6.2201 1.2395 4.2587 12 6 6.6026 2.3977 3.2996 13 8 7.7286 2.0446 2.4937 14 6 6.8664 3.6684 4.0655 15 1 6.1951 4.5085 3.9653 16 6 7.9648 3.7586 4.8940 17 7 8.7826 2.7358 5.0155 18 14 8.2921 5.3341 5.8428 19 1 7.2323 6.3273 5.5338 20 1 8.2889 5.0445 7.2992 21 1 9.6150 5.8827 5.4500 22 6 5.3212 2.5243 2.4383 23 6 4.0795 -1.4433 -0.0003 24 6 3.5695 -0.7222 -1.2495 25 1 3.9331 0.3054 -1.2498 26 6 4.0784 -1.4442 -2.4988 27 6 2.0395 -0.7216 -1.2492 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6767 -0.2074 2.1392 32 1 1.6767 -1.7488 1.2493 33 1 4.5273 -0.0852 3.9428 34 1 5.9721 -0.4928 2.9757 35 1 7.1111 0.7182 4.6083 36 1 5.6380 1.6129 5.1011 37 1 8.5540 1.9539 2.9893 38 1 9.5555 2.7994 5.5981 39 1 5.5558 2.9734 1.4732 40 1 4.5692 3.1169 2.9590 41 1 3.7158 -2.4710 0.0000 42 1 5.1695 -1.4441 -0.0004 43 1 3.7154 -0.9301 -3.3887 44 1 5.1684 -1.4450 -2.4993 45 1 3.7144 -2.4716 -2.4983 46 1 1.6757 -1.7492 -1.2489 47 1 1.6761 -0.2075 -2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:59 Heat of formation + Delta-G solvation = -128.973832 kcal Electronic energy + Delta-G solvation = -25614.216184 eV Core-core repulsion = 22180.844541 eV Total energy + Delta-G solvation = -3433.371643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71691 -39.77972 -38.03113 -36.07590 -34.31058 -34.15222 -33.20840 -31.30468 -30.00921 -27.46165 -27.20236 -27.16737 -24.59687 -23.15025 -21.58465 -21.38047 -21.17138 -19.76159 -19.13391 -17.82562 -17.01259 -16.86137 -16.54331 -16.06193 -15.84384 -15.68886 -15.11065 -14.91879 -14.71367 -14.46320 -13.94144 -13.86994 -13.62129 -13.37197 -13.23409 -13.14616 -13.01191 -12.96527 -12.89755 -12.69301 -12.61371 -12.58997 -12.47861 -12.26118 -12.05083 -11.89162 -11.61180 -11.50804 -11.28834 -10.89015 -10.86436 -10.67176 -10.20340 -10.09145 -9.46973 -8.26614 -6.41322 1.39957 1.44363 1.54365 1.70237 2.12609 2.39526 2.98331 3.53617 3.74146 3.82243 3.83975 3.95823 4.08675 4.20677 4.22943 4.34509 4.37533 4.45364 4.46673 4.60621 4.65418 4.66800 4.72713 4.82075 4.86157 4.88437 4.92806 4.94525 4.99020 5.01747 5.07125 5.15130 5.16893 5.28556 5.32063 5.38199 5.43293 5.49462 5.51405 5.53922 5.60303 5.76300 5.79627 6.05144 6.61746 6.73374 7.28231 7.30665 7.44378 8.79945 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.003807 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.799188 B = 7353.677369 C = 7638.897749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.061 0.939 4 C -0.092 4.092 5 C -0.098 4.098 6 H 0.102 0.898 7 C 0.520 3.480 8 O -0.571 6.571 9 N -0.614 5.614 10 C 0.108 3.892 11 C -0.130 4.130 12 C 0.235 3.765 13 O -0.596 6.596 14 C -0.562 4.562 15 H 0.055 0.945 16 C 0.036 3.964 17 N -0.910 5.910 18 Si 0.962 3.038 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.280 1.280 22 C 0.125 3.875 23 C -0.094 4.094 24 C -0.111 4.111 25 H 0.058 0.942 26 C -0.140 4.140 27 C -0.090 4.090 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.381 0.619 38 H 0.273 0.727 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.955 -12.220 -5.390 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 H 0.079 0.921 4 C -0.129 4.129 5 C -0.120 4.120 6 H 0.120 0.880 7 C 0.311 3.689 8 O -0.452 6.452 9 N -0.347 5.347 10 C -0.014 4.014 11 C -0.169 4.169 12 C 0.194 3.806 13 O -0.406 6.406 14 C -0.601 4.601 15 H 0.073 0.927 16 C -0.165 4.165 17 N -0.550 5.550 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.206 1.206 22 C 0.002 3.998 23 C -0.132 4.132 24 C -0.129 4.129 25 H 0.077 0.923 26 C -0.197 4.197 27 C -0.127 4.127 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.447 -11.915 -6.304 18.347 hybrid contribution 1.209 1.404 1.048 2.128 sum -11.238 -10.511 -5.256 16.261 Atomic orbital electron populations 1.21768 0.94276 1.02309 1.01280 1.21367 0.95862 1.00617 0.95105 0.92081 1.21462 0.90987 1.02546 0.97948 1.21379 0.98487 0.90401 1.01687 0.87960 1.21113 0.77116 0.91039 0.79669 1.90521 1.59298 1.59540 1.35798 1.48803 1.49681 1.10702 1.25513 1.22150 0.97803 0.93950 0.87514 1.22989 0.98899 0.97197 0.97794 1.19766 0.82520 0.92031 0.86255 1.86092 1.21146 1.92668 1.40720 1.21759 1.11283 1.00361 1.26658 0.92652 1.25616 0.95049 0.99463 0.96342 1.69627 1.14961 1.31214 1.39193 0.85455 0.77884 0.79565 0.78387 1.19838 1.19876 1.20627 1.22078 0.95382 0.83549 0.98806 1.21463 0.99704 0.99818 0.92205 1.21354 0.96667 1.00131 0.94758 0.92333 1.21774 1.00351 1.00820 0.96789 1.21443 0.93930 1.00533 0.96806 0.91217 0.93261 0.93023 0.92337 0.88141 0.89283 0.91304 0.91119 0.91674 0.76801 0.91777 0.94010 0.91299 0.88082 0.93209 0.92902 0.93698 0.91082 0.90497 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 2 C -0.11 -2.71 2.42 -10.79 -0.03 -2.74 16 3 H 0.06 2.03 5.51 -2.39 -0.01 2.01 16 4 C -0.09 -2.00 4.72 30.59 0.14 -1.86 16 5 C -0.10 -2.53 2.91 -11.54 -0.03 -2.56 16 6 H 0.10 2.26 6.61 -2.38 -0.02 2.24 16 7 C 0.52 18.91 6.53 87.65 0.57 19.48 16 8 O -0.57 -24.20 11.58 -3.04 -0.04 -24.23 16 9 N -0.61 -24.07 3.33 -811.77 -2.70 -26.77 16 10 C 0.11 3.70 5.83 86.73 0.51 4.20 16 11 C -0.13 -5.48 5.64 31.79 0.18 -5.31 16 12 C 0.23 11.53 0.89 -10.15 -0.01 11.52 16 13 O -0.60 -31.56 13.18 -148.98 -1.96 -33.53 16 14 C -0.56 -29.75 8.25 25.60 0.21 -29.54 16 15 H 0.06 2.95 7.77 -2.91 -0.02 2.93 16 16 C 0.04 1.85 5.30 84.66 0.45 2.30 16 17 N -0.91 -46.67 10.79 21.45 0.23 -46.43 16 18 Si 0.96 41.14 29.54 68.60 2.03 43.17 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 22 C 0.12 5.77 6.10 86.86 0.53 6.30 16 23 C -0.09 -2.22 4.72 30.59 0.14 -2.07 16 24 C -0.11 -2.85 2.42 -10.79 -0.03 -2.88 16 25 H 0.06 2.05 5.51 -2.39 -0.01 2.04 16 26 C -0.14 -2.97 9.19 71.98 0.66 -2.31 16 27 C -0.09 -1.99 4.48 30.59 0.14 -1.86 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 2.43 7.95 -2.39 -0.02 2.41 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 3.13 7.85 -2.39 -0.02 3.11 16 36 H 0.06 2.73 8.03 -2.39 -0.02 2.71 16 37 H 0.38 20.29 6.93 -74.05 -0.51 19.78 16 38 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 39 H 0.04 2.12 7.99 -2.38 -0.02 2.10 16 40 H 0.07 3.11 8.02 -2.39 -0.02 3.09 16 41 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -60.43 354.66 2.08 -58.35 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: 0.42 Total: 38.79 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 4.10 Total: -9.33 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -2.47 Total: -73.21 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -2.00 Total: -57.76 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -60.43 2.08 -58.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.628 kcal (2) G-P(sol) polarization free energy of solvation -60.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds