Wall clock time and date at job start Tue Mar 31 2020 07:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.46919 * 59.99964 * 6 5 4 9 9 O 1.21282 * 119.99864 * 239.99770 * 8 6 5 10 10 N 1.34774 * 120.00165 * 60.00271 * 8 6 5 11 11 C 1.47424 * 125.64713 * 359.69243 * 10 8 6 12 12 C 1.55129 * 104.72424 * 155.81635 * 11 10 8 13 13 C 1.55156 * 101.48446 * 37.29318 * 12 11 10 14 14 O 1.42897 * 110.72141 * 82.70021 * 13 12 11 15 15 C 1.50703 * 110.86980 * 205.89897 * 13 12 11 16 16 H 1.08007 * 119.99816 * 113.61382 * 15 13 12 17 17 C 1.37873 * 120.00313 * 293.60603 * 15 13 12 18 18 N 1.31516 * 119.99917 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00345 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47156 * 60.00079 * 19 17 15 21 21 H 1.48499 * 109.47175 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46818 * 300.00399 * 19 17 15 23 23 C 1.47021 * 125.65039 * 179.97438 * 10 8 6 24 24 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 25 2 1 27 27 C 1.53005 * 109.47159 * 300.00546 * 25 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 35 35 H 1.08998 * 110.36698 * 274.74263 * 11 10 8 36 36 H 1.09005 * 110.37071 * 37.06718 * 11 10 8 37 37 H 1.08999 * 111.19383 * 279.18999 * 12 11 10 38 38 H 1.09000 * 110.93910 * 155.28426 * 12 11 10 39 39 H 0.96692 * 114.00459 * 66.47433 * 14 13 12 40 40 H 0.96995 * 120.00478 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.87996 * 300.44184 * 23 10 8 42 42 H 1.09001 * 109.88123 * 61.44947 * 23 10 8 43 43 H 1.09001 * 109.47194 * 179.97438 * 24 6 5 44 44 H 1.09002 * 109.47131 * 300.00452 * 24 6 5 45 45 H 1.08992 * 109.47061 * 59.99386 * 27 25 2 46 46 H 1.09001 * 109.46812 * 179.97438 * 27 25 2 47 47 H 1.09002 * 109.46935 * 299.99411 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 1 5.1706 -1.4408 -0.0002 8 6 3.5787 -2.8625 0.0001 9 8 2.8818 -3.2593 0.9099 10 7 3.9044 -3.6924 -1.0106 11 6 4.7346 -3.3412 -2.1772 12 6 5.3146 -4.6931 -2.6697 13 6 4.1157 -5.6487 -2.4314 14 8 3.1880 -5.5762 -3.5158 15 6 4.5898 -7.0653 -2.2317 16 1 4.4625 -7.5473 -1.2736 17 6 5.1858 -7.7459 -3.2721 18 7 5.3412 -7.1588 -4.4386 19 14 5.7728 -9.5020 -3.0248 20 1 4.6212 -10.3603 -2.6477 21 1 6.3738 -10.0052 -4.2861 22 1 6.7905 -9.5361 -1.9439 23 6 3.4858 -5.0963 -1.1354 24 6 3.5706 -0.7202 1.2490 25 6 2.0400 -0.7212 1.2493 26 1 1.6767 -1.7488 1.2493 27 6 1.5299 0.0001 2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2074 -2.1391 33 1 3.9334 -1.2342 -2.1397 34 1 3.9330 0.3071 -1.2497 35 1 4.1227 -2.8828 -2.9540 36 1 5.5398 -2.6688 -1.8812 37 1 6.1771 -4.9922 -2.0742 38 1 5.5710 -4.6445 -3.7280 39 1 3.5352 -5.9114 -4.3536 40 1 5.7608 -7.6374 -5.1705 41 1 3.8418 -5.6669 -0.2775 42 1 2.3990 -5.1552 -1.1945 43 1 3.9339 -1.2340 2.1390 44 1 3.9335 0.3076 1.2487 45 1 0.4400 0.0001 2.4984 46 1 1.8929 -0.5140 3.3885 47 1 1.8933 1.0278 2.4985 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:26 Heat of formation + Delta-G solvation = -111.934710 kcal Electronic energy + Delta-G solvation = -25821.685470 eV Core-core repulsion = 22389.052699 eV Total energy + Delta-G solvation = -3432.632771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46140 -38.26694 -36.83066 -34.45822 -33.10904 -32.16524 -31.86843 -29.66031 -28.36500 -27.41738 -25.91793 -24.84106 -22.97159 -21.83283 -21.09361 -20.06505 -19.50355 -18.35000 -17.25245 -16.24274 -15.66586 -15.06302 -14.99571 -14.74753 -14.50730 -14.23115 -14.05771 -13.80360 -13.37661 -13.07189 -12.93539 -12.27469 -12.11438 -12.05264 -11.89895 -11.79580 -11.78105 -11.56179 -11.46666 -11.35603 -11.27967 -11.21190 -10.86333 -10.75442 -10.62079 -10.52935 -10.30418 -10.13066 -9.87267 -9.83242 -9.41464 -9.02912 -8.67364 -8.22758 -7.95258 -6.31490 -4.38727 3.12780 3.20569 3.25326 3.28811 3.59662 4.25177 4.68117 4.74042 4.78444 4.94643 5.00615 5.11041 5.25603 5.38548 5.43005 5.52220 5.54580 5.58841 5.68502 5.75386 5.77205 5.83127 5.84898 5.90699 5.93792 5.96349 6.00203 6.07233 6.11088 6.14563 6.24547 6.31218 6.39543 6.45851 6.46247 6.48359 6.69879 6.79466 6.91220 6.98860 7.28675 7.32506 7.71682 7.99149 8.17787 8.62669 8.71855 9.29773 9.43903 10.76284 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030507 B = 0.003887 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.591358 B = 7200.895582 C = 7369.682139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.063 0.937 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.105 4.105 7 H 0.090 0.910 8 C 0.529 3.471 9 O -0.551 6.551 10 N -0.607 5.607 11 C 0.097 3.903 12 C -0.138 4.138 13 C 0.249 3.751 14 O -0.587 6.587 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.903 3.097 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.123 3.877 24 C -0.089 4.089 25 C -0.102 4.102 26 H 0.103 0.897 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.386 0.614 40 H 0.270 0.730 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 14.583 5.086 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.126 4.126 7 H 0.109 0.891 8 C 0.318 3.682 9 O -0.430 6.430 10 N -0.339 5.339 11 C -0.026 4.026 12 C -0.177 4.177 13 C 0.208 3.792 14 O -0.397 6.397 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.001 3.999 24 C -0.127 4.127 25 C -0.120 4.120 26 H 0.121 0.879 27 C -0.201 4.201 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.809 14.636 5.899 16.028 hybrid contribution 0.907 -1.188 -0.502 1.577 sum -1.902 13.448 5.397 14.615 Atomic orbital electron populations 1.21875 0.95641 1.01900 1.01106 1.21146 0.95278 0.98909 0.94930 0.91834 1.21602 0.95049 1.01293 0.97462 1.21664 0.96367 1.00406 0.97024 1.21298 1.01168 0.92477 0.97647 0.89143 1.20137 0.80410 0.86741 0.80937 1.90574 1.39112 1.77227 1.36130 1.48639 1.50596 1.12837 1.21846 1.22578 0.93186 0.99334 0.87471 1.23366 0.99921 0.92524 1.01863 1.19414 0.84339 0.92569 0.82841 1.86095 1.44007 1.87108 1.22496 1.21526 1.39274 0.98101 0.98493 0.91802 1.24979 0.94420 0.98659 0.94903 1.69561 1.44178 1.37718 1.02374 0.86463 0.79096 0.83827 0.77546 1.19966 1.21079 1.20063 1.22052 0.99286 0.79665 0.98929 1.21349 0.96016 0.99022 0.96295 1.21463 0.94865 1.02169 0.93543 0.87931 1.21839 1.00782 0.99646 0.97822 0.92663 0.93144 0.92627 0.91717 0.91989 0.90583 0.91298 0.91749 0.92229 0.91509 0.89741 0.76236 0.92041 0.91238 0.92280 0.91569 0.91958 0.92764 0.92978 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.84 37.16 0.33 -1.31 16 2 C -0.08 -0.99 2.25 -90.63 -0.20 -1.20 16 3 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.51 4.98 -26.74 -0.13 -1.64 16 5 C -0.12 -1.44 5.26 -26.73 -0.14 -1.58 16 6 C -0.10 -1.44 2.36 -91.77 -0.22 -1.66 16 7 H 0.09 1.13 7.85 -51.93 -0.41 0.72 16 8 C 0.53 9.61 5.70 -10.99 -0.06 9.55 16 9 O -0.55 -11.52 13.98 5.56 0.08 -11.44 16 10 N -0.61 -11.75 3.32 -170.38 -0.57 -12.31 16 11 C 0.10 1.71 5.13 -2.41 -0.01 1.70 16 12 C -0.14 -2.91 5.69 -24.46 -0.14 -3.05 16 13 C 0.25 5.94 0.85 -89.94 -0.08 5.86 16 14 O -0.59 -14.69 13.09 -35.23 -0.46 -15.15 16 15 C -0.54 -13.92 8.22 -34.44 -0.28 -14.21 16 16 H 0.06 1.67 7.53 -52.48 -0.40 1.27 16 17 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 18 N -0.90 -22.82 10.70 55.43 0.59 -22.23 16 19 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.12 2.76 6.21 -3.07 -0.02 2.74 16 24 C -0.09 -1.13 4.37 -26.70 -0.12 -1.25 16 25 C -0.10 -1.34 1.95 -90.59 -0.18 -1.52 16 26 H 0.10 1.71 5.51 -51.93 -0.29 1.42 16 27 C -0.14 -1.59 8.84 37.16 0.33 -1.27 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 31 H 0.06 1.03 7.22 -51.93 -0.37 0.66 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.97 4.98 -51.93 -0.26 0.71 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.11 7.08 -51.93 -0.37 0.74 16 36 H 0.06 0.88 7.35 -51.93 -0.38 0.50 16 37 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 38 H 0.08 1.85 7.77 -51.93 -0.40 1.45 16 39 H 0.39 9.75 6.98 45.56 0.32 10.06 16 40 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 41 H 0.07 1.60 7.63 -51.92 -0.40 1.21 16 42 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 43 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -27.12 348.35 -8.54 -35.67 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.40 Total: 12.20 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.02 Total: -7.08 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.03 Total: -34.54 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.38 Total: -26.59 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.12 -8.54 -35.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.268 kcal (2) G-P(sol) polarization free energy of solvation -27.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds