Wall clock time and date at job start Tue Mar 31 2020 07:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.46919 * 59.99964 * 6 5 4 9 9 O 1.21282 * 119.99864 * 239.99770 * 8 6 5 10 10 N 1.34774 * 120.00165 * 60.00271 * 8 6 5 11 11 C 1.47424 * 125.64713 * 359.69243 * 10 8 6 12 12 C 1.55129 * 104.72424 * 155.81635 * 11 10 8 13 13 C 1.55156 * 101.48446 * 37.29318 * 12 11 10 14 14 O 1.42897 * 110.72141 * 82.70021 * 13 12 11 15 15 C 1.50703 * 110.86980 * 205.89897 * 13 12 11 16 16 H 1.08007 * 119.99816 * 113.61382 * 15 13 12 17 17 C 1.37873 * 120.00313 * 293.60603 * 15 13 12 18 18 N 1.31516 * 119.99917 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00345 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47156 * 60.00079 * 19 17 15 21 21 H 1.48499 * 109.47175 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46818 * 300.00399 * 19 17 15 23 23 C 1.47021 * 125.65039 * 179.97438 * 10 8 6 24 24 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 25 2 1 27 27 C 1.53005 * 109.47159 * 300.00546 * 25 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 35 35 H 1.08998 * 110.36698 * 274.74263 * 11 10 8 36 36 H 1.09005 * 110.37071 * 37.06718 * 11 10 8 37 37 H 1.08999 * 111.19383 * 279.18999 * 12 11 10 38 38 H 1.09000 * 110.93910 * 155.28426 * 12 11 10 39 39 H 0.96692 * 114.00459 * 66.47433 * 14 13 12 40 40 H 0.96995 * 120.00478 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.87996 * 300.44184 * 23 10 8 42 42 H 1.09001 * 109.88123 * 61.44947 * 23 10 8 43 43 H 1.09001 * 109.47194 * 179.97438 * 24 6 5 44 44 H 1.09002 * 109.47131 * 300.00452 * 24 6 5 45 45 H 1.08992 * 109.47061 * 59.99386 * 27 25 2 46 46 H 1.09001 * 109.46812 * 179.97438 * 27 25 2 47 47 H 1.09002 * 109.46935 * 299.99411 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 1 5.1706 -1.4408 -0.0002 8 6 3.5787 -2.8625 0.0001 9 8 2.8818 -3.2593 0.9099 10 7 3.9044 -3.6924 -1.0106 11 6 4.7346 -3.3412 -2.1772 12 6 5.3146 -4.6931 -2.6697 13 6 4.1157 -5.6487 -2.4314 14 8 3.1880 -5.5762 -3.5158 15 6 4.5898 -7.0653 -2.2317 16 1 4.4625 -7.5473 -1.2736 17 6 5.1858 -7.7459 -3.2721 18 7 5.3412 -7.1588 -4.4386 19 14 5.7728 -9.5020 -3.0248 20 1 4.6212 -10.3603 -2.6477 21 1 6.3738 -10.0052 -4.2861 22 1 6.7905 -9.5361 -1.9439 23 6 3.4858 -5.0963 -1.1354 24 6 3.5706 -0.7202 1.2490 25 6 2.0400 -0.7212 1.2493 26 1 1.6767 -1.7488 1.2493 27 6 1.5299 0.0001 2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2074 -2.1391 33 1 3.9334 -1.2342 -2.1397 34 1 3.9330 0.3071 -1.2497 35 1 4.1227 -2.8828 -2.9540 36 1 5.5398 -2.6688 -1.8812 37 1 6.1771 -4.9922 -2.0742 38 1 5.5710 -4.6445 -3.7280 39 1 3.5352 -5.9114 -4.3536 40 1 5.7608 -7.6374 -5.1705 41 1 3.8418 -5.6669 -0.2775 42 1 2.3990 -5.1552 -1.1945 43 1 3.9339 -1.2340 2.1390 44 1 3.9335 0.3076 1.2487 45 1 0.4400 0.0001 2.4984 46 1 1.8929 -0.5140 3.3885 47 1 1.8933 1.0278 2.4985 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:25 Heat of formation + Delta-G solvation = -128.232234 kcal Electronic energy + Delta-G solvation = -25822.392184 eV Core-core repulsion = 22389.052699 eV Total energy + Delta-G solvation = -3433.339485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76585 -39.73830 -38.31152 -36.19275 -34.23232 -34.15125 -32.84194 -31.33986 -30.07144 -28.40685 -27.37478 -26.21925 -24.47005 -22.88611 -22.34521 -21.49297 -20.91041 -19.78792 -19.15832 -17.68560 -17.05003 -16.96738 -16.37686 -16.07284 -15.99624 -15.44947 -15.17619 -15.00523 -14.73265 -14.65025 -14.25036 -13.87286 -13.48919 -13.39332 -13.30704 -13.24842 -12.96728 -12.80662 -12.76122 -12.68281 -12.58322 -12.40709 -12.39180 -12.27092 -12.25734 -11.98346 -11.75320 -11.40030 -11.27089 -10.83446 -10.79711 -10.67637 -10.40157 -10.14555 -9.55183 -8.27090 -6.41384 1.41441 1.43240 1.50433 1.70746 2.10109 2.38785 2.98296 3.51758 3.73504 3.79663 3.85229 3.95639 4.00194 4.14791 4.21464 4.30501 4.38945 4.43567 4.48699 4.57255 4.61155 4.65777 4.68555 4.75188 4.83602 4.90121 4.91579 4.95690 4.99954 5.08835 5.13295 5.16223 5.20546 5.22562 5.27011 5.34380 5.39720 5.45620 5.50915 5.53077 5.55934 5.74830 5.78077 6.05183 6.59434 6.71066 7.24606 7.29846 7.43814 8.79130 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030507 B = 0.003887 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.591358 B = 7200.895582 C = 7369.682139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.091 0.909 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.099 4.099 7 H 0.114 0.886 8 C 0.522 3.478 9 O -0.585 6.585 10 N -0.611 5.611 11 C 0.108 3.892 12 C -0.129 4.129 13 C 0.237 3.763 14 O -0.595 6.595 15 C -0.567 4.567 16 H 0.050 0.950 17 C 0.039 3.961 18 N -0.907 5.907 19 Si 0.959 3.041 20 H -0.279 1.279 21 H -0.275 1.275 22 H -0.273 1.273 23 C 0.130 3.870 24 C -0.088 4.088 25 C -0.105 4.105 26 H 0.057 0.943 27 C -0.139 4.139 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.382 0.618 40 H 0.274 0.726 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 17.374 4.899 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.109 0.891 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.119 4.119 7 H 0.132 0.868 8 C 0.313 3.687 9 O -0.466 6.466 10 N -0.344 5.344 11 C -0.014 4.014 12 C -0.168 4.168 13 C 0.197 3.803 14 O -0.405 6.405 15 C -0.605 4.605 16 H 0.068 0.932 17 C -0.162 4.162 18 N -0.546 5.546 19 Si 0.784 3.216 20 H -0.204 1.204 21 H -0.200 1.200 22 H -0.198 1.198 23 C 0.007 3.993 24 C -0.125 4.125 25 C -0.123 4.123 26 H 0.075 0.925 27 C -0.196 4.196 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.478 17.449 5.709 18.419 hybrid contribution 0.416 -2.100 -0.421 2.182 sum -1.062 15.350 5.287 16.269 Atomic orbital electron populations 1.21872 0.95556 1.00630 1.02373 1.21144 0.95424 0.99760 0.93462 0.89075 1.21611 0.95995 0.99078 0.98832 1.21702 0.95453 1.02167 0.95707 1.21420 1.02377 0.88903 0.99242 0.86799 1.21179 0.79470 0.88329 0.79683 1.90572 1.40469 1.78213 1.37381 1.48722 1.51136 1.11528 1.22999 1.22590 0.93905 0.97884 0.86976 1.23151 0.98442 0.93848 1.01331 1.19554 0.85313 0.92657 0.82773 1.86083 1.44761 1.87077 1.22601 1.21742 1.40627 0.99662 0.98434 0.93193 1.25570 0.94276 1.01730 0.94664 1.69612 1.43793 1.38650 1.02550 0.85602 0.78404 0.79805 0.77752 1.20432 1.20031 1.19807 1.21725 0.97661 0.82026 0.97926 1.21394 0.95496 1.00575 0.95052 1.21392 0.95472 1.00116 0.95336 0.92461 1.21795 1.00912 1.00516 0.96416 0.95224 0.91894 0.91330 0.96008 0.90547 0.90936 0.87548 0.90996 0.88181 0.92309 0.90523 0.76633 0.91682 0.92819 0.94662 0.93022 0.88366 0.92619 0.93764 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.84 71.98 0.64 -2.43 16 2 C -0.08 -1.69 2.25 -10.80 -0.02 -1.71 16 3 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.12 -2.84 4.98 30.59 0.15 -2.69 16 5 C -0.11 -2.36 5.26 30.59 0.16 -2.20 16 6 C -0.10 -2.46 2.36 -11.54 -0.03 -2.48 16 7 H 0.11 2.36 7.85 -2.39 -0.02 2.34 16 8 C 0.52 19.02 5.70 87.66 0.50 19.52 16 9 O -0.59 -25.52 13.98 -3.04 -0.04 -25.56 16 10 N -0.61 -23.87 3.32 -811.35 -2.69 -26.57 16 11 C 0.11 3.66 5.13 86.93 0.45 4.10 16 12 C -0.13 -5.44 5.69 32.06 0.18 -5.26 16 13 C 0.24 11.66 0.85 -10.35 -0.01 11.66 16 14 O -0.60 -30.70 13.09 -148.98 -1.95 -32.65 16 15 C -0.57 -30.36 8.22 25.60 0.21 -30.15 16 16 H 0.05 2.73 7.53 -2.91 -0.02 2.71 16 17 C 0.04 2.00 5.28 84.65 0.45 2.44 16 18 N -0.91 -46.11 10.70 21.45 0.23 -45.88 16 19 Si 0.96 41.43 29.54 68.60 2.03 43.45 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.13 6.14 6.21 86.73 0.54 6.68 16 24 C -0.09 -1.99 4.37 30.61 0.13 -1.86 16 25 C -0.10 -2.61 1.95 -10.77 -0.02 -2.63 16 26 H 0.06 1.98 5.51 -2.39 -0.01 1.97 16 27 C -0.14 -2.83 8.84 71.98 0.64 -2.19 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.23 6.43 -2.38 -0.02 1.22 16 31 H 0.02 0.70 7.22 -2.39 -0.02 0.68 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.59 4.98 -2.38 -0.01 1.58 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 2.35 7.08 -2.39 -0.02 2.34 16 36 H 0.10 2.61 7.35 -2.38 -0.02 2.59 16 37 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 38 H 0.08 3.34 7.77 -2.39 -0.02 3.32 16 39 H 0.38 19.80 6.98 -74.06 -0.52 19.29 16 40 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 41 H 0.05 2.65 7.63 -2.38 -0.02 2.63 16 42 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 43 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.09 6.43 -2.39 -0.02 1.08 16 46 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -61.70 348.35 1.97 -59.73 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 0.44 Total: 36.69 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 3.96 Total: -9.21 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -2.46 Total: -72.45 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -1.99 Total: -58.22 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -61.70 1.97 -59.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.503 kcal (2) G-P(sol) polarization free energy of solvation -61.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds