Wall clock time and date at job start Tue Mar 31 2020 07:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47318 * 2 1 4 4 C 1.52995 * 109.47242 * 239.99509 * 2 1 3 5 5 C 1.53006 * 109.47133 * 300.00274 * 4 2 1 6 6 C 1.52997 * 109.46879 * 299.99375 * 5 4 2 7 7 H 1.08988 * 109.47870 * 300.00245 * 6 5 4 8 8 C 1.50706 * 109.46783 * 179.97438 * 6 5 4 9 9 O 1.21279 * 120.00061 * 273.66524 * 8 6 5 10 10 N 1.34772 * 119.99840 * 93.66994 * 8 6 5 11 11 C 1.47426 * 125.64937 * 185.00215 * 10 8 6 12 12 C 1.54910 * 104.83228 * 204.09034 * 11 10 8 13 13 C 1.55153 * 101.58161 * 322.98814 * 12 11 10 14 14 O 1.42898 * 110.72361 * 277.14043 * 13 12 11 15 15 C 1.50704 * 110.71859 * 154.04299 * 13 12 11 16 16 H 1.08001 * 119.99843 * 241.45469 * 15 13 12 17 17 C 1.37876 * 119.99990 * 61.45535 * 15 13 12 18 18 N 1.31519 * 119.99830 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00045 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46945 * 60.00164 * 19 17 15 21 21 H 1.48497 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47252 * 300.00348 * 19 17 15 23 23 C 1.47022 * 125.64725 * 4.68916 * 10 8 6 24 24 C 1.53004 * 109.46899 * 60.00409 * 6 5 4 25 25 C 1.52996 * 109.47025 * 299.99500 * 24 6 5 26 26 H 1.09002 * 109.47362 * 300.00220 * 25 24 6 27 27 C 1.53004 * 109.47025 * 179.97438 * 25 24 6 28 28 H 1.09001 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47207 * 60.00242 * 1 2 3 30 30 H 1.09001 * 109.47011 * 300.00319 * 1 2 3 31 31 H 1.09001 * 109.47176 * 60.00055 * 4 2 1 32 32 H 1.08999 * 109.47531 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.46865 * 59.99650 * 5 4 2 34 34 H 1.09001 * 109.47107 * 179.97438 * 5 4 2 35 35 H 1.09003 * 110.36431 * 322.92728 * 11 10 8 36 36 H 1.08995 * 110.36846 * 85.13813 * 11 10 8 37 37 H 1.09000 * 111.00119 * 81.06588 * 12 11 10 38 38 H 1.09001 * 110.99998 * 204.87238 * 12 11 10 39 39 H 0.96703 * 113.99557 * 298.54708 * 14 13 12 40 40 H 0.97000 * 119.99701 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.88367 * 298.39594 * 23 10 8 42 42 H 1.09002 * 109.88543 * 59.56598 * 23 10 8 43 43 H 1.09002 * 109.47231 * 59.99801 * 24 6 5 44 44 H 1.09001 * 109.47347 * 179.97438 * 24 6 5 45 45 H 1.08999 * 109.47472 * 299.99841 * 27 25 24 46 46 H 1.08994 * 109.46988 * 60.00232 * 27 25 24 47 47 H 1.09002 * 109.46762 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1639 -1.2491 6 6 2.0401 -2.8850 0.0002 7 1 3.1299 -2.8851 0.0002 8 6 1.5371 -4.3057 0.0005 9 8 0.4476 -4.5631 0.4668 10 7 2.2982 -5.2901 -0.5172 11 6 1.8908 -6.6980 -0.6759 12 6 3.2191 -7.4947 -0.7018 13 6 4.1460 -6.5294 -1.4868 14 8 3.9567 -6.6802 -2.8951 15 6 5.5891 -6.7577 -1.1173 16 1 6.1631 -5.9623 -0.6653 17 6 6.1766 -7.9819 -1.3563 18 7 5.4777 -8.9503 -1.9072 19 14 7.9655 -8.2647 -0.8990 20 1 8.1411 -8.0615 0.5616 21 1 8.3541 -9.6529 -1.2553 22 1 8.8233 -7.3045 -1.6389 23 6 3.6700 -5.1363 -1.0232 24 6 1.5300 -2.1637 1.2494 25 6 2.0401 -0.7212 1.2493 26 1 3.1301 -0.7212 1.2493 27 6 1.5295 0.0003 2.4982 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 1.6767 -0.2076 -2.1392 32 1 3.1300 -0.7218 -1.2489 33 1 0.4400 -2.1638 -1.2490 34 1 1.8930 -2.6776 -2.1392 35 1 1.2763 -7.0124 0.1677 36 1 1.3475 -6.8326 -1.6111 37 1 3.5942 -7.6618 0.3079 38 1 3.0979 -8.4390 -1.2325 39 1 4.1668 -7.5636 -3.2278 40 1 5.8909 -9.8117 -2.0750 41 1 3.6798 -4.4409 -1.8624 42 1 4.3197 -4.7704 -0.2281 43 1 0.4400 -2.1637 1.2494 44 1 1.8930 -2.6777 2.1394 45 1 0.4395 0.0004 2.4978 46 1 1.8925 -0.5133 3.3884 47 1 1.8925 1.0281 2.4979 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:34 Heat of formation + Delta-G solvation = -117.155135 kcal Electronic energy + Delta-G solvation = -25443.915742 eV Core-core repulsion = 22011.056596 eV Total energy + Delta-G solvation = -3432.859146 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26324 -38.66798 -37.12157 -34.24204 -32.90624 -32.24932 -31.84354 -29.69043 -28.32825 -27.62716 -25.88154 -25.10229 -23.50806 -21.85864 -21.29094 -19.90389 -18.61447 -18.30565 -17.27192 -16.42497 -15.78771 -15.43638 -15.08748 -14.99007 -14.73441 -14.22171 -13.96527 -13.83512 -13.26959 -12.97107 -12.78155 -12.62308 -12.42502 -12.12866 -12.02235 -11.96976 -11.88129 -11.68120 -11.37215 -11.30760 -11.19133 -11.05989 -10.87280 -10.73495 -10.56762 -10.50562 -10.39029 -10.17457 -10.09657 -10.00058 -9.48311 -9.14537 -8.69936 -8.24169 -7.98588 -6.31611 -4.40126 3.08165 3.18913 3.24427 3.26579 3.57102 4.22798 4.61104 4.64504 4.66855 4.95265 5.04607 5.12138 5.14292 5.26289 5.32568 5.43758 5.54719 5.58274 5.60983 5.63585 5.68386 5.79673 5.86007 5.88325 5.92070 5.94738 5.98234 6.01062 6.04730 6.09775 6.22902 6.26042 6.28749 6.30239 6.36791 6.39274 6.57135 6.61508 6.92649 6.97784 7.28864 7.34602 7.69350 7.95740 8.15974 8.61438 8.66862 9.26300 9.35379 10.75851 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003907 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.818005 B = 7164.516244 C = 7536.100077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.101 4.101 7 H 0.088 0.912 8 C 0.528 3.472 9 O -0.561 6.561 10 N -0.608 5.608 11 C 0.102 3.898 12 C -0.134 4.134 13 C 0.248 3.752 14 O -0.586 6.586 15 C -0.538 4.538 16 H 0.063 0.937 17 C 0.074 3.926 18 N -0.894 5.894 19 Si 0.903 3.097 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.114 3.886 24 C -0.097 4.097 25 C -0.087 4.087 26 H 0.070 0.930 27 C -0.148 4.148 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.383 0.617 40 H 0.269 0.731 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 13.754 3.303 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.145 4.145 6 C -0.122 4.122 7 H 0.106 0.894 8 C 0.317 3.683 9 O -0.441 6.441 10 N -0.340 5.340 11 C -0.021 4.021 12 C -0.173 4.173 13 C 0.208 3.792 14 O -0.395 6.395 15 C -0.576 4.576 16 H 0.081 0.919 17 C -0.129 4.129 18 N -0.533 5.533 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.008 4.008 24 C -0.135 4.135 25 C -0.105 4.105 26 H 0.088 0.912 27 C -0.205 4.205 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.233 0.767 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.416 14.102 3.562 15.897 hybrid contribution 1.293 -0.977 0.154 1.628 sum -5.123 13.125 3.717 14.571 Atomic orbital electron populations 1.22015 0.95416 1.02566 1.01188 1.21125 0.96023 0.98760 0.94547 0.91442 1.21555 1.00784 0.95055 0.97524 1.21454 1.01466 0.95244 0.96330 1.21263 1.01857 0.91622 0.97486 0.89354 1.20253 0.84363 0.86448 0.77262 1.90620 1.21946 1.84027 1.47484 1.48689 1.16001 1.09320 1.60002 1.22373 0.98838 0.80708 1.00134 1.23299 0.92641 0.99580 1.01786 1.19440 0.92735 0.87575 0.79467 1.86117 1.90957 1.38328 1.24077 1.21448 0.95910 0.98422 1.41815 0.91866 1.24981 0.98555 0.95530 0.93876 1.69692 1.36795 1.04003 1.42823 0.86482 0.84150 0.77342 0.79042 1.20073 1.21097 1.19986 1.22173 0.80850 1.00157 0.97637 1.21477 1.02028 0.93974 0.96020 1.21150 1.00184 0.94671 0.94543 0.91156 1.21868 1.01474 0.99834 0.97311 0.91629 0.93106 0.92661 0.91729 0.91673 0.91095 0.91464 0.92006 0.92325 0.91603 0.89445 0.76706 0.92110 0.91991 0.91066 0.90457 0.91976 0.92344 0.92783 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.15 37.16 0.30 -1.20 16 2 C -0.09 -0.84 2.72 -90.62 -0.25 -1.09 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.18 5.45 -26.73 -0.15 -1.32 16 5 C -0.11 -1.40 4.91 -26.73 -0.13 -1.53 16 6 C -0.10 -1.48 2.21 -91.77 -0.20 -1.68 16 7 H 0.09 1.27 6.97 -51.94 -0.36 0.90 16 8 C 0.53 9.96 6.86 -10.98 -0.08 9.88 16 9 O -0.56 -12.03 16.48 5.56 0.09 -11.94 16 10 N -0.61 -12.12 3.33 -170.51 -0.57 -12.69 16 11 C 0.10 2.08 6.92 -2.53 -0.02 2.07 16 12 C -0.13 -2.98 5.47 -24.58 -0.13 -3.12 16 13 C 0.25 5.79 0.84 -89.93 -0.08 5.72 16 14 O -0.59 -14.28 13.06 -35.23 -0.46 -14.74 16 15 C -0.54 -13.56 8.23 -34.44 -0.28 -13.84 16 16 H 0.06 1.57 7.58 -52.49 -0.40 1.17 16 17 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 18 N -0.89 -22.67 10.67 55.43 0.59 -22.08 16 19 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.11 2.33 5.38 -3.06 -0.02 2.31 16 24 C -0.10 -1.27 3.85 -26.73 -0.10 -1.38 16 25 C -0.09 -0.91 2.50 -90.62 -0.23 -1.14 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 28 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.49 6.43 -51.93 -0.33 0.15 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.24 7.99 -51.93 -0.41 0.82 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 38 H 0.09 2.02 7.53 -51.93 -0.39 1.63 16 39 H 0.38 9.42 7.46 45.56 0.34 9.76 16 40 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 41 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.07 1.39 7.43 -51.93 -0.39 1.01 16 43 H 0.08 1.09 6.14 -51.93 -0.32 0.77 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -27.07 353.03 -8.55 -35.62 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.38 Total: 11.35 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.12 Total: -5.58 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.02 Total: -34.77 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.37 Total: -26.68 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.07 -8.55 -35.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.538 kcal (2) G-P(sol) polarization free energy of solvation -27.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds