Wall clock time and date at job start Tue Mar 31 2020 07:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47318 * 2 1 4 4 C 1.52995 * 109.47242 * 239.99509 * 2 1 3 5 5 C 1.53006 * 109.47133 * 300.00274 * 4 2 1 6 6 C 1.52997 * 109.46879 * 299.99375 * 5 4 2 7 7 H 1.08988 * 109.47870 * 300.00245 * 6 5 4 8 8 C 1.50706 * 109.46783 * 179.97438 * 6 5 4 9 9 O 1.21279 * 120.00061 * 273.66524 * 8 6 5 10 10 N 1.34772 * 119.99840 * 93.66994 * 8 6 5 11 11 C 1.47426 * 125.64937 * 185.00215 * 10 8 6 12 12 C 1.54910 * 104.83228 * 204.09034 * 11 10 8 13 13 C 1.55153 * 101.58161 * 322.98814 * 12 11 10 14 14 O 1.42898 * 110.72361 * 277.14043 * 13 12 11 15 15 C 1.50704 * 110.71859 * 154.04299 * 13 12 11 16 16 H 1.08001 * 119.99843 * 241.45469 * 15 13 12 17 17 C 1.37876 * 119.99990 * 61.45535 * 15 13 12 18 18 N 1.31519 * 119.99830 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00045 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46945 * 60.00164 * 19 17 15 21 21 H 1.48497 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47252 * 300.00348 * 19 17 15 23 23 C 1.47022 * 125.64725 * 4.68916 * 10 8 6 24 24 C 1.53004 * 109.46899 * 60.00409 * 6 5 4 25 25 C 1.52996 * 109.47025 * 299.99500 * 24 6 5 26 26 H 1.09002 * 109.47362 * 300.00220 * 25 24 6 27 27 C 1.53004 * 109.47025 * 179.97438 * 25 24 6 28 28 H 1.09001 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47207 * 60.00242 * 1 2 3 30 30 H 1.09001 * 109.47011 * 300.00319 * 1 2 3 31 31 H 1.09001 * 109.47176 * 60.00055 * 4 2 1 32 32 H 1.08999 * 109.47531 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.46865 * 59.99650 * 5 4 2 34 34 H 1.09001 * 109.47107 * 179.97438 * 5 4 2 35 35 H 1.09003 * 110.36431 * 322.92728 * 11 10 8 36 36 H 1.08995 * 110.36846 * 85.13813 * 11 10 8 37 37 H 1.09000 * 111.00119 * 81.06588 * 12 11 10 38 38 H 1.09001 * 110.99998 * 204.87238 * 12 11 10 39 39 H 0.96703 * 113.99557 * 298.54708 * 14 13 12 40 40 H 0.97000 * 119.99701 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.88367 * 298.39594 * 23 10 8 42 42 H 1.09002 * 109.88543 * 59.56598 * 23 10 8 43 43 H 1.09002 * 109.47231 * 59.99801 * 24 6 5 44 44 H 1.09001 * 109.47347 * 179.97438 * 24 6 5 45 45 H 1.08999 * 109.47472 * 299.99841 * 27 25 24 46 46 H 1.08994 * 109.46988 * 60.00232 * 27 25 24 47 47 H 1.09002 * 109.46762 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1639 -1.2491 6 6 2.0401 -2.8850 0.0002 7 1 3.1299 -2.8851 0.0002 8 6 1.5371 -4.3057 0.0005 9 8 0.4476 -4.5631 0.4668 10 7 2.2982 -5.2901 -0.5172 11 6 1.8908 -6.6980 -0.6759 12 6 3.2191 -7.4947 -0.7018 13 6 4.1460 -6.5294 -1.4868 14 8 3.9567 -6.6802 -2.8951 15 6 5.5891 -6.7577 -1.1173 16 1 6.1631 -5.9623 -0.6653 17 6 6.1766 -7.9819 -1.3563 18 7 5.4777 -8.9503 -1.9072 19 14 7.9655 -8.2647 -0.8990 20 1 8.1411 -8.0615 0.5616 21 1 8.3541 -9.6529 -1.2553 22 1 8.8233 -7.3045 -1.6389 23 6 3.6700 -5.1363 -1.0232 24 6 1.5300 -2.1637 1.2494 25 6 2.0401 -0.7212 1.2493 26 1 3.1301 -0.7212 1.2493 27 6 1.5295 0.0003 2.4982 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 1.6767 -0.2076 -2.1392 32 1 3.1300 -0.7218 -1.2489 33 1 0.4400 -2.1638 -1.2490 34 1 1.8930 -2.6776 -2.1392 35 1 1.2763 -7.0124 0.1677 36 1 1.3475 -6.8326 -1.6111 37 1 3.5942 -7.6618 0.3079 38 1 3.0979 -8.4390 -1.2325 39 1 4.1668 -7.5636 -3.2278 40 1 5.8909 -9.8117 -2.0750 41 1 3.6798 -4.4409 -1.8624 42 1 4.3197 -4.7704 -0.2281 43 1 0.4400 -2.1637 1.2494 44 1 1.8930 -2.6777 2.1394 45 1 0.4395 0.0004 2.4978 46 1 1.8925 -0.5133 3.3884 47 1 1.8925 1.0281 2.4979 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:33 Heat of formation + Delta-G solvation = -132.500968 kcal Electronic energy + Delta-G solvation = -25444.581187 eV Core-core repulsion = 22011.056596 eV Total energy + Delta-G solvation = -3433.524591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58224 -39.98860 -38.73522 -36.02964 -34.18578 -33.95002 -32.80142 -31.35593 -30.07224 -28.49316 -27.01940 -26.68685 -24.87357 -23.02016 -22.47103 -21.71737 -20.00554 -19.38781 -19.09055 -17.94104 -17.13314 -16.89947 -16.67306 -16.21694 -15.96838 -15.88700 -15.40309 -14.96444 -14.67599 -14.32826 -13.96189 -13.85835 -13.67448 -13.50036 -13.40967 -13.28703 -13.14968 -13.00251 -12.78903 -12.74389 -12.64820 -12.41091 -12.28070 -12.12907 -12.03098 -11.93314 -11.59518 -11.39601 -11.23752 -11.08245 -10.90705 -10.67281 -10.53174 -10.13697 -9.63523 -8.22389 -6.37366 1.45569 1.47103 1.53737 1.57326 2.03692 2.40855 3.03404 3.43739 3.69634 3.72783 3.82119 3.97115 4.10101 4.16914 4.20428 4.25581 4.31397 4.33419 4.40441 4.54372 4.56131 4.62121 4.66767 4.72730 4.79118 4.82694 4.89081 4.96826 5.02694 5.10669 5.13711 5.15322 5.18765 5.19600 5.26669 5.34478 5.40654 5.43441 5.47448 5.48660 5.53176 5.70225 5.76847 6.06329 6.55837 6.68773 7.11796 7.31841 7.40070 8.83510 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003907 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.818005 B = 7164.516244 C = 7536.100077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.088 0.912 4 C -0.107 4.107 5 C -0.104 4.104 6 C -0.095 4.095 7 H 0.095 0.905 8 C 0.524 3.476 9 O -0.589 6.589 10 N -0.613 5.613 11 C 0.107 3.893 12 C -0.123 4.123 13 C 0.234 3.766 14 O -0.591 6.591 15 C -0.559 4.559 16 H 0.063 0.937 17 C 0.034 3.966 18 N -0.910 5.910 19 Si 0.960 3.040 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.125 3.875 24 C -0.093 4.093 25 C -0.083 4.083 26 H 0.076 0.924 27 C -0.146 4.146 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.378 0.622 40 H 0.270 0.730 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 15.849 3.633 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.107 0.893 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.116 4.116 7 H 0.113 0.887 8 C 0.315 3.685 9 O -0.471 6.471 10 N -0.345 5.345 11 C -0.016 4.016 12 C -0.162 4.162 13 C 0.194 3.806 14 O -0.400 6.400 15 C -0.597 4.597 16 H 0.081 0.919 17 C -0.167 4.167 18 N -0.549 5.549 19 Si 0.785 3.215 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.002 3.998 24 C -0.131 4.131 25 C -0.101 4.101 26 H 0.094 0.906 27 C -0.203 4.203 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.650 16.214 3.893 17.606 hybrid contribution 1.006 -1.675 0.044 1.955 sum -4.644 14.539 3.938 15.762 Atomic orbital electron populations 1.21995 0.95496 1.01454 1.02115 1.21142 0.95907 0.99557 0.93539 0.89346 1.21556 1.01138 0.93095 0.98671 1.21446 1.01001 0.96890 0.94819 1.21336 1.02120 0.88946 0.99215 0.88667 1.21079 0.83792 0.87692 0.75975 1.90600 1.23223 1.84667 1.48600 1.48772 1.16050 1.09257 1.60376 1.22238 0.97884 0.81249 1.00218 1.23087 0.93364 0.99106 1.00650 1.19630 0.92519 0.89413 0.78994 1.86111 1.90958 1.38046 1.24856 1.21729 0.96939 0.98748 1.42279 0.91854 1.25638 1.01873 0.95368 0.93827 1.69776 1.37921 1.04141 1.43057 0.85587 0.80076 0.77111 0.78703 1.19829 1.20958 1.19736 1.22026 0.81045 0.98583 0.98106 1.21459 1.01250 0.95727 0.94644 1.21142 1.00443 0.92795 0.95759 0.90610 1.21850 1.01454 1.00547 0.96423 0.93720 0.92212 0.91771 0.90335 0.91034 0.91873 0.92543 0.91753 0.92397 0.92731 0.90781 0.77197 0.92089 0.91286 0.90112 0.91674 0.92983 0.92411 0.93019 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.15 71.98 0.59 -2.06 16 2 C -0.08 -1.38 2.72 -10.79 -0.03 -1.41 16 3 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -1.98 5.45 30.59 0.17 -1.81 16 5 C -0.10 -2.59 4.91 30.60 0.15 -2.44 16 6 C -0.10 -2.71 2.21 -11.54 -0.03 -2.73 16 7 H 0.10 2.58 6.97 -2.39 -0.02 2.57 16 8 C 0.52 19.70 6.86 87.66 0.60 20.30 16 9 O -0.59 -25.51 16.48 -3.03 -0.05 -25.56 16 10 N -0.61 -24.36 3.33 -811.76 -2.70 -27.06 16 11 C 0.11 4.42 6.92 86.86 0.60 5.02 16 12 C -0.12 -5.56 5.47 31.98 0.17 -5.38 16 13 C 0.23 10.96 0.84 -10.35 -0.01 10.95 16 14 O -0.59 -28.98 13.06 -148.98 -1.95 -30.93 16 15 C -0.56 -28.03 8.23 25.60 0.21 -27.82 16 16 H 0.06 3.10 7.58 -2.91 -0.02 3.08 16 17 C 0.03 1.71 5.28 84.65 0.45 2.15 16 18 N -0.91 -46.25 10.67 21.45 0.23 -46.02 16 19 Si 0.96 40.06 29.54 68.60 2.03 42.09 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 C 0.12 5.02 5.38 86.73 0.47 5.49 16 24 C -0.09 -2.35 3.85 30.59 0.12 -2.23 16 25 C -0.08 -1.54 2.50 -10.79 -0.03 -1.57 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 C -0.15 -2.31 8.84 71.98 0.64 -1.67 16 28 H 0.04 0.96 4.81 -2.39 -0.01 0.95 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.98 6.43 -2.39 -0.02 0.97 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.68 6.43 -2.39 -0.02 1.66 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 2.61 7.99 -2.39 -0.02 2.59 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.05 2.54 8.04 -2.39 -0.02 2.52 16 38 H 0.07 3.51 7.53 -2.39 -0.02 3.49 16 39 H 0.38 18.92 7.46 -74.06 -0.55 18.37 16 40 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 41 H 0.07 2.67 8.07 -2.39 -0.02 2.65 16 42 H 0.08 3.08 7.43 -2.39 -0.02 3.06 16 43 H 0.06 1.81 6.14 -2.39 -0.01 1.80 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 0.92 6.43 -2.39 -0.02 0.91 16 46 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -56.89 353.03 2.03 -54.86 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: 0.40 Total: 37.83 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.07 Total: -5.22 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -2.47 Total: -73.08 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -2.00 Total: -56.48 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -56.89 2.03 -54.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.639 kcal (2) G-P(sol) polarization free energy of solvation -56.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds