Wall clock time and date at job start Tue Mar 31 2020 08:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00054 * 2 1 4 4 C 1.53003 * 109.47024 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46854 * 65.00101 * 4 3 2 6 6 C 1.37093 * 120.00208 * 264.54545 * 5 4 3 7 7 H 1.07998 * 119.99868 * 145.62288 * 6 5 4 8 8 C 1.38946 * 120.00113 * 325.63189 * 6 5 4 9 9 N 1.31421 * 119.99886 * 338.16255 * 8 6 5 10 10 Si 1.86797 * 120.00439 * 158.16463 * 8 6 5 11 11 H 1.48492 * 109.47630 * 89.99590 * 10 8 6 12 12 H 1.48500 * 109.47257 * 209.99954 * 10 8 6 13 13 H 1.48506 * 109.47077 * 329.99689 * 10 8 6 14 14 C 1.34771 * 119.99661 * 84.54811 * 5 4 3 15 15 O 1.21297 * 120.00358 * 359.97438 * 14 5 4 16 16 C 1.50750 * 119.99899 * 179.72544 * 14 5 4 17 17 H 1.08854 * 115.53064 * 325.85278 * 16 14 5 18 18 C 1.52935 * 117.54680 * 112.42882 * 16 14 5 19 19 H 1.11698 * 115.08306 * 358.66517 * 18 16 14 20 20 C 1.51234 * 122.10619 * 214.81201 * 18 16 14 21 21 C 1.53757 * 113.74513 * 326.39131 * 20 18 16 22 22 C 1.53422 * 109.51654 * 254.13326 * 21 20 18 23 23 C 1.52476 * 114.31648 * 33.89716 * 22 21 20 24 24 C 1.53040 * 116.05583 * 71.05485 * 23 22 21 25 25 C 1.52964 * 108.52403 * 327.78850 * 24 23 22 26 26 C 1.50766 * 60.45164 * 107.04378 * 18 16 14 27 27 H 1.11363 * 116.64190 * 254.60060 * 26 18 16 28 28 H 1.09002 * 109.46890 * 300.00033 * 1 2 3 29 29 H 1.08994 * 109.46884 * 60.00261 * 1 2 3 30 30 H 1.09004 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46959 * 60.00171 * 3 2 1 32 32 H 1.08993 * 109.47208 * 300.00010 * 3 2 1 33 33 H 1.08997 * 109.47287 * 305.00534 * 4 3 2 34 34 H 1.09005 * 109.46970 * 185.00011 * 4 3 2 35 35 H 0.97000 * 119.99972 * 180.02562 * 9 8 6 36 36 H 1.09525 * 110.52045 * 201.28724 * 20 18 16 37 37 H 1.10981 * 108.37263 * 86.65859 * 20 18 16 38 38 H 1.11272 * 108.14684 * 137.03323 * 21 20 18 39 39 H 1.08247 * 112.34304 * 21.10261 * 21 20 18 40 40 H 1.09946 * 108.80458 * 272.23062 * 22 21 20 41 41 H 1.09828 * 109.01262 * 156.00059 * 22 21 20 42 42 H 1.08375 * 110.52049 * 307.04209 * 23 22 21 43 43 H 1.09840 * 107.67005 * 190.54497 * 23 22 21 44 44 H 1.08689 * 109.14504 * 208.20191 * 24 23 22 45 45 H 1.08602 * 109.27735 * 87.57791 * 24 23 22 46 46 H 1.11176 * 107.14607 * 159.56669 * 25 24 23 47 47 H 1.07380 * 111.73025 * 43.87458 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.2056 -0.7868 -1.3028 7 1 3.9862 -1.3373 -2.2057 8 6 4.7196 -1.4474 -0.1938 9 7 5.3779 -0.7759 0.7243 10 14 4.4751 -3.2900 -0.0078 11 1 5.6065 -4.0067 -0.6491 12 1 4.4218 -3.6391 1.4346 13 1 3.2025 -3.6889 -0.6610 14 6 4.1575 1.3208 -2.3513 15 8 3.9545 2.5158 -2.3056 16 6 4.6174 0.6831 -3.6375 17 1 5.3027 -0.1553 -3.5267 18 6 3.6289 0.6510 -4.8040 19 1 2.6257 1.0916 -4.5868 20 6 3.5745 -0.5030 -5.7800 21 6 4.9430 -1.1491 -6.0516 22 6 5.4361 -0.7385 -7.4452 23 6 5.0329 0.6711 -7.8637 24 6 5.7379 1.8166 -7.1337 25 6 6.0430 1.3669 -5.7038 26 6 4.8023 1.5965 -4.8497 27 1 4.5828 2.6737 -4.6720 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1766 0.0902 35 1 5.7371 -1.2372 1.4983 36 1 3.1028 -0.1908 -6.7178 37 1 2.9018 -1.2816 -5.3640 38 1 4.8108 -2.2540 -6.0516 39 1 5.6580 -0.9448 -5.2650 40 1 5.0431 -1.4512 -8.1844 41 1 6.5310 -0.8189 -7.4753 42 1 3.9625 0.8062 -7.7615 43 1 5.2695 0.7827 -8.9305 44 1 5.0827 2.6837 -7.1143 45 1 6.6626 2.0559 -7.6505 46 1 6.8539 2.0232 -5.3198 47 1 6.4334 0.3670 -5.6764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597754948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:45 Heat of formation + Delta-G solvation = -59.376407 kcal Electronic energy + Delta-G solvation = -25651.779660 eV Core-core repulsion = 22221.425988 eV Total energy + Delta-G solvation = -3430.353672 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.70517 -38.07639 -36.84178 -34.86060 -34.19883 -32.34034 -31.49720 -29.37364 -27.54062 -26.75781 -25.81310 -24.69792 -23.42070 -21.63660 -20.46278 -20.15841 -19.01098 -18.36226 -16.73834 -16.17900 -15.45948 -15.31979 -15.20030 -14.94151 -14.48856 -14.31657 -14.20201 -13.82948 -13.41661 -13.31963 -12.99128 -12.87295 -12.07222 -11.99179 -11.87110 -11.59422 -11.45493 -11.22916 -11.14927 -11.04065 -10.96024 -10.94171 -10.78845 -10.52001 -10.41825 -10.30323 -10.00157 -9.93645 -9.78404 -9.17682 -9.04511 -9.02589 -8.89566 -8.33438 -7.44464 -6.27756 -3.89361 3.18467 3.29524 3.36239 3.71894 4.20052 4.52851 4.56015 4.68942 4.91614 4.99480 5.05640 5.13841 5.23285 5.39113 5.45531 5.48050 5.58419 5.66713 5.69057 5.73690 5.75509 5.91990 6.00142 6.02220 6.04987 6.05473 6.12339 6.13482 6.18989 6.26311 6.29898 6.39129 6.40813 6.42909 6.49983 6.54098 6.66748 6.70535 6.76581 6.86190 6.97252 7.33812 7.56630 7.85996 8.05102 8.48061 9.20168 9.62609 10.03582 10.75451 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.005356 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.032440 B = 5226.806912 C = 5866.086224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.424 5.424 6 C -0.315 4.315 7 H 0.088 0.912 8 C 0.046 3.954 9 N -0.865 5.865 10 Si 0.912 3.088 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.493 3.507 15 O -0.614 6.614 16 C -0.149 4.149 17 H 0.120 0.880 18 C -0.112 4.112 19 H 0.094 0.906 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.094 4.094 26 C -0.123 4.123 27 H 0.103 0.897 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.267 0.733 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 -0.316 -10.293 10.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.140 5.140 6 C -0.443 4.443 7 H 0.106 0.894 8 C -0.159 4.159 9 N -0.503 5.503 10 Si 0.739 3.261 11 H -0.207 1.207 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.282 3.718 15 O -0.501 6.501 16 C -0.170 4.170 17 H 0.138 0.862 18 C -0.131 4.131 19 H 0.112 0.888 20 C -0.122 4.122 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.131 4.131 26 C -0.142 4.142 27 H 0.121 0.879 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.736 0.033 -10.046 10.412 hybrid contribution -0.426 -0.805 0.373 0.984 sum -3.162 -0.772 -9.673 10.206 Atomic orbital electron populations 1.22638 0.83518 1.01679 0.98784 1.88137 1.17295 1.27784 1.95025 1.23032 0.96669 0.84243 0.98529 1.21481 0.89074 0.99034 0.91501 1.43264 1.55910 1.07341 1.07497 1.19286 1.41662 0.82068 1.01269 0.89412 1.25224 0.94215 0.99742 0.96728 1.69916 1.31437 1.37024 1.11896 0.86178 0.78848 0.83429 0.77621 1.20682 1.20923 1.19324 1.19555 0.80813 0.85739 0.85674 1.90488 1.58231 1.15459 1.85957 1.22158 1.03807 1.02658 0.88356 0.86224 1.21710 0.94588 0.98689 0.98107 0.88795 1.21113 0.96677 0.96318 0.98107 1.22042 0.97604 0.99414 0.96747 1.21550 1.00617 0.95781 0.96526 1.21457 1.01268 0.94168 0.98674 1.21420 0.99746 0.97807 0.95801 1.21252 0.95463 1.02481 0.93866 1.22102 0.96559 0.97431 0.98078 0.87887 0.95198 0.95048 0.90466 0.94403 0.94169 0.86558 0.91413 0.92247 0.91305 0.92858 0.93211 0.90164 0.92837 0.92735 0.91748 0.93851 0.91694 0.92748 0.93134 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.96 10.44 -35.23 -0.37 -8.33 16 3 C 0.05 1.14 6.24 37.16 0.23 1.37 16 4 C 0.11 2.77 5.29 -4.04 -0.02 2.75 16 5 N -0.42 -10.88 2.51 -114.79 -0.29 -11.16 16 6 C -0.31 -8.14 8.21 -14.94 -0.12 -8.27 16 7 H 0.09 2.22 7.17 -52.49 -0.38 1.84 16 8 C 0.05 1.18 4.93 -17.47 -0.09 1.09 16 9 N -0.87 -23.21 11.34 55.50 0.63 -22.58 16 10 Si 0.91 20.29 29.61 -169.99 -5.03 15.25 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.49 12.25 7.38 -10.96 -0.08 12.17 16 15 O -0.61 -16.38 15.81 5.54 0.09 -16.30 16 16 C -0.15 -3.07 4.19 -91.83 -0.38 -3.45 16 17 H 0.12 2.52 6.13 -52.01 -0.32 2.20 16 18 C -0.11 -1.94 5.63 -92.66 -0.52 -2.46 16 19 H 0.09 1.73 8.35 -50.36 -0.42 1.31 16 20 C -0.09 -1.21 5.02 -27.23 -0.14 -1.35 16 21 C -0.12 -1.60 4.95 -26.12 -0.13 -1.72 16 22 C -0.11 -1.20 4.99 -26.78 -0.13 -1.33 16 23 C -0.12 -1.32 5.07 -26.98 -0.14 -1.45 16 24 C -0.11 -1.32 6.07 -26.73 -0.16 -1.48 16 25 C -0.09 -1.35 4.77 -27.07 -0.13 -1.48 16 26 C -0.12 -2.14 4.58 -92.11 -0.42 -2.56 16 27 H 0.10 1.99 7.69 -50.56 -0.39 1.60 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.12 3.05 5.37 -51.93 -0.28 2.77 16 34 H 0.07 1.67 7.59 -51.93 -0.39 1.28 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.07 0.87 5.88 -51.63 -0.30 0.57 16 37 H 0.05 0.77 8.31 -50.79 -0.42 0.35 16 38 H 0.05 0.62 8.33 -50.62 -0.42 0.20 16 39 H 0.08 1.18 4.28 -52.35 -0.22 0.95 16 40 H 0.05 0.54 8.22 -51.39 -0.42 0.12 16 41 H 0.05 0.59 8.00 -51.46 -0.41 0.17 16 42 H 0.06 0.74 5.87 -52.28 -0.31 0.43 16 43 H 0.04 0.43 8.20 -51.45 -0.42 0.00 16 44 H 0.06 0.79 7.86 -52.10 -0.41 0.38 16 45 H 0.05 0.58 8.11 -52.15 -0.42 0.16 16 46 H 0.05 0.74 8.32 -50.67 -0.42 0.31 16 47 H 0.08 1.16 4.16 -52.83 -0.22 0.94 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -29.36 356.20 -8.56 -37.92 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.83 Total: 6.37 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.12 Total: -6.55 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.34 Total: -33.74 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.28 Total: -24.62 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.36 -8.56 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.454 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds