Wall clock time and date at job start Tue Mar 31 2020 08:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00054 * 2 1 4 4 C 1.53003 * 109.47024 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46854 * 65.00101 * 4 3 2 6 6 C 1.37093 * 120.00208 * 264.54545 * 5 4 3 7 7 H 1.07998 * 119.99868 * 145.62288 * 6 5 4 8 8 C 1.38946 * 120.00113 * 325.63189 * 6 5 4 9 9 N 1.31421 * 119.99886 * 338.16255 * 8 6 5 10 10 Si 1.86797 * 120.00439 * 158.16463 * 8 6 5 11 11 H 1.48492 * 109.47630 * 89.99590 * 10 8 6 12 12 H 1.48500 * 109.47257 * 209.99954 * 10 8 6 13 13 H 1.48506 * 109.47077 * 329.99689 * 10 8 6 14 14 C 1.34771 * 119.99661 * 84.54811 * 5 4 3 15 15 O 1.21297 * 120.00358 * 359.97438 * 14 5 4 16 16 C 1.50750 * 119.99899 * 179.72544 * 14 5 4 17 17 H 1.08854 * 115.53064 * 325.85278 * 16 14 5 18 18 C 1.52935 * 117.54680 * 112.42882 * 16 14 5 19 19 H 1.11698 * 115.08306 * 358.66517 * 18 16 14 20 20 C 1.51234 * 122.10619 * 214.81201 * 18 16 14 21 21 C 1.53757 * 113.74513 * 326.39131 * 20 18 16 22 22 C 1.53422 * 109.51654 * 254.13326 * 21 20 18 23 23 C 1.52476 * 114.31648 * 33.89716 * 22 21 20 24 24 C 1.53040 * 116.05583 * 71.05485 * 23 22 21 25 25 C 1.52964 * 108.52403 * 327.78850 * 24 23 22 26 26 C 1.50766 * 60.45164 * 107.04378 * 18 16 14 27 27 H 1.11363 * 116.64190 * 254.60060 * 26 18 16 28 28 H 1.09002 * 109.46890 * 300.00033 * 1 2 3 29 29 H 1.08994 * 109.46884 * 60.00261 * 1 2 3 30 30 H 1.09004 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46959 * 60.00171 * 3 2 1 32 32 H 1.08993 * 109.47208 * 300.00010 * 3 2 1 33 33 H 1.08997 * 109.47287 * 305.00534 * 4 3 2 34 34 H 1.09005 * 109.46970 * 185.00011 * 4 3 2 35 35 H 0.97000 * 119.99972 * 180.02562 * 9 8 6 36 36 H 1.09525 * 110.52045 * 201.28724 * 20 18 16 37 37 H 1.10981 * 108.37263 * 86.65859 * 20 18 16 38 38 H 1.11272 * 108.14684 * 137.03323 * 21 20 18 39 39 H 1.08247 * 112.34304 * 21.10261 * 21 20 18 40 40 H 1.09946 * 108.80458 * 272.23062 * 22 21 20 41 41 H 1.09828 * 109.01262 * 156.00059 * 22 21 20 42 42 H 1.08375 * 110.52049 * 307.04209 * 23 22 21 43 43 H 1.09840 * 107.67005 * 190.54497 * 23 22 21 44 44 H 1.08689 * 109.14504 * 208.20191 * 24 23 22 45 45 H 1.08602 * 109.27735 * 87.57791 * 24 23 22 46 46 H 1.11176 * 107.14607 * 159.56669 * 25 24 23 47 47 H 1.07380 * 111.73025 * 43.87458 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.2056 -0.7868 -1.3028 7 1 3.9862 -1.3373 -2.2057 8 6 4.7196 -1.4474 -0.1938 9 7 5.3779 -0.7759 0.7243 10 14 4.4751 -3.2900 -0.0078 11 1 5.6065 -4.0067 -0.6491 12 1 4.4218 -3.6391 1.4346 13 1 3.2025 -3.6889 -0.6610 14 6 4.1575 1.3208 -2.3513 15 8 3.9545 2.5158 -2.3056 16 6 4.6174 0.6831 -3.6375 17 1 5.3027 -0.1553 -3.5267 18 6 3.6289 0.6510 -4.8040 19 1 2.6257 1.0916 -4.5868 20 6 3.5745 -0.5030 -5.7800 21 6 4.9430 -1.1491 -6.0516 22 6 5.4361 -0.7385 -7.4452 23 6 5.0329 0.6711 -7.8637 24 6 5.7379 1.8166 -7.1337 25 6 6.0430 1.3669 -5.7038 26 6 4.8023 1.5965 -4.8497 27 1 4.5828 2.6737 -4.6720 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1766 0.0902 35 1 5.7371 -1.2372 1.4983 36 1 3.1028 -0.1908 -6.7178 37 1 2.9018 -1.2816 -5.3640 38 1 4.8108 -2.2540 -6.0516 39 1 5.6580 -0.9448 -5.2650 40 1 5.0431 -1.4512 -8.1844 41 1 6.5310 -0.8189 -7.4753 42 1 3.9625 0.8062 -7.7615 43 1 5.2695 0.7827 -8.9305 44 1 5.0827 2.6837 -7.1143 45 1 6.6626 2.0559 -7.6505 46 1 6.8539 2.0232 -5.3198 47 1 6.4334 0.3670 -5.6764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597754948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:44 Heat of formation + Delta-G solvation = -74.898126 kcal Electronic energy + Delta-G solvation = -25652.452732 eV Core-core repulsion = 22221.425988 eV Total energy + Delta-G solvation = -3431.026744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24975 -39.70080 -38.47465 -36.64215 -35.63181 -33.50928 -33.41086 -31.14604 -28.73115 -27.85987 -27.30794 -26.61121 -25.00687 -23.12808 -21.75781 -21.44090 -20.76632 -19.78698 -18.41138 -17.95488 -17.10539 -17.00640 -16.54072 -16.23775 -16.12471 -15.90750 -15.70587 -15.23095 -14.95632 -14.87515 -14.17443 -14.13832 -13.75106 -13.49769 -13.31968 -13.13561 -12.90672 -12.83888 -12.68248 -12.53368 -12.43680 -12.30284 -12.10970 -12.04844 -11.91144 -11.78793 -11.43703 -11.07985 -10.93979 -10.87426 -10.57248 -10.48547 -10.45235 -10.20705 -9.45045 -8.25423 -5.93067 1.40779 1.48704 1.60435 1.90607 2.35268 2.87244 2.98844 3.00374 3.25623 3.80538 3.92285 3.95734 4.02586 4.15543 4.20450 4.22964 4.23956 4.36574 4.39780 4.48628 4.50760 4.53287 4.58104 4.59997 4.66477 4.78431 4.84602 4.90466 4.91821 5.01767 5.07594 5.11758 5.17885 5.22547 5.32436 5.33140 5.36077 5.39902 5.44221 5.53946 5.55373 5.69827 5.74925 6.00723 6.38054 6.47788 7.19817 7.65265 8.06458 8.78633 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.005356 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.032440 B = 5226.806912 C = 5866.086224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.066 3.934 4 C 0.110 3.890 5 N -0.435 5.435 6 C -0.325 4.325 7 H 0.089 0.911 8 C 0.006 3.994 9 N -0.896 5.896 10 Si 0.976 3.024 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.478 3.522 15 O -0.643 6.643 16 C -0.176 4.176 17 H 0.113 0.887 18 C -0.091 4.091 19 H 0.078 0.922 20 C -0.082 4.082 21 C -0.122 4.122 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.106 4.106 25 C -0.091 4.091 26 C -0.102 4.102 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.270 0.730 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 -1.872 -12.306 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.011 4.011 4 C -0.014 4.014 5 N -0.150 5.150 6 C -0.453 4.453 7 H 0.107 0.893 8 C -0.195 4.195 9 N -0.534 5.534 10 Si 0.800 3.200 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.190 1.190 14 C 0.269 3.731 15 O -0.533 6.533 16 C -0.197 4.197 17 H 0.131 0.869 18 C -0.110 4.110 19 H 0.097 0.903 20 C -0.119 4.119 21 C -0.159 4.159 22 C -0.142 4.142 23 C -0.156 4.156 24 C -0.144 4.144 25 C -0.128 4.128 26 C -0.121 4.121 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.303 -1.528 -12.065 12.602 hybrid contribution -0.284 -0.253 1.042 1.109 sum -3.587 -1.782 -11.024 11.729 Atomic orbital electron populations 1.22894 0.80619 1.03390 1.00231 1.88063 1.20495 1.27671 1.95292 1.22773 0.94479 0.84627 0.99233 1.21433 0.91470 0.97662 0.90872 1.43492 1.56024 1.07603 1.07927 1.19466 1.41931 0.82232 1.01683 0.89294 1.25998 0.93608 1.03749 0.96190 1.70014 1.32261 1.38721 1.12445 0.85206 0.78950 0.78389 0.77441 1.19600 1.20859 1.19040 1.20294 0.80242 0.85614 0.86927 1.90443 1.59553 1.16637 1.86660 1.22021 1.06074 1.03864 0.87703 0.86877 1.21761 0.93301 0.99566 0.96408 0.90343 1.21160 0.97792 0.94893 0.98096 1.22032 0.96358 0.99903 0.97634 1.21528 1.01138 0.96176 0.95352 1.21450 1.00844 0.93604 0.99720 1.21404 1.00788 0.98174 0.94011 1.21280 0.93546 1.02948 0.95066 1.22162 0.97889 0.95710 0.96332 0.90242 0.92911 0.94351 0.88688 0.91573 0.95352 0.88204 0.92928 0.92074 0.88844 0.93088 0.92338 0.92037 0.90990 0.92043 0.92087 0.91748 0.92080 0.90900 0.93698 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -17.22 10.44 -148.98 -1.56 -18.78 16 3 C 0.07 2.90 6.24 71.98 0.45 3.35 16 4 C 0.11 5.60 5.29 86.38 0.46 6.06 16 5 N -0.43 -23.15 2.51 -635.46 -1.59 -24.75 16 6 C -0.33 -17.20 8.21 84.04 0.69 -16.51 16 7 H 0.09 4.57 7.17 -2.91 -0.02 4.55 16 8 C 0.01 0.33 4.93 84.92 0.42 0.75 16 9 N -0.90 -49.12 11.34 21.66 0.25 -48.87 16 10 Si 0.98 41.52 29.61 68.60 2.03 43.55 16 11 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 14 C 0.48 24.85 7.38 87.67 0.65 25.50 16 15 O -0.64 -36.03 15.81 -3.08 -0.05 -36.07 16 16 C -0.18 -7.47 4.19 -11.58 -0.05 -7.52 16 17 H 0.11 4.92 6.13 -2.46 -0.02 4.91 16 18 C -0.09 -3.16 5.63 -12.12 -0.07 -3.23 16 19 H 0.08 2.95 8.35 -0.92 -0.01 2.94 16 20 C -0.08 -2.21 5.02 30.27 0.15 -2.05 16 21 C -0.12 -2.96 4.95 30.99 0.15 -2.81 16 22 C -0.10 -1.97 4.99 30.56 0.15 -1.82 16 23 C -0.12 -2.23 5.07 30.43 0.15 -2.08 16 24 C -0.11 -2.30 6.07 30.60 0.19 -2.11 16 25 C -0.09 -2.55 4.77 30.37 0.15 -2.40 16 26 C -0.10 -3.60 4.58 -11.76 -0.05 -3.65 16 27 H 0.08 3.18 7.69 -1.10 -0.01 3.17 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 5.44 5.37 -2.39 -0.01 5.43 16 34 H 0.05 2.75 7.59 -2.38 -0.02 2.74 16 35 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.09 2.09 5.88 -2.11 -0.01 2.08 16 37 H 0.05 1.40 8.31 -1.32 -0.01 1.39 16 38 H 0.06 1.32 8.33 -1.16 -0.01 1.31 16 39 H 0.06 1.74 4.28 -2.78 -0.01 1.73 16 40 H 0.07 1.14 8.22 -1.88 -0.02 1.12 16 41 H 0.06 1.10 8.00 -1.95 -0.02 1.09 16 42 H 0.06 1.19 5.87 -2.72 -0.02 1.18 16 43 H 0.06 0.99 8.20 -1.94 -0.02 0.97 16 44 H 0.06 1.37 7.86 -2.55 -0.02 1.35 16 45 H 0.07 1.34 8.11 -2.60 -0.02 1.32 16 46 H 0.04 1.29 8.32 -1.21 -0.01 1.28 16 47 H 0.09 2.41 4.16 -3.23 -0.01 2.39 16 Total: -1.00 -65.25 356.20 4.76 -60.50 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 1.00 Total: 30.93 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 4.68 Total: -6.50 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.35 Total: -73.62 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -1.60 Total: -54.85 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -65.25 4.76 -60.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.401 kcal (2) G-P(sol) polarization free energy of solvation -65.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds