Wall clock time and date at job start Tue Mar 31 2020 08:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99861 * 2 1 4 4 C 1.52999 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.50707 * 110.43230 * 305.06656 * 4 3 2 6 6 O 1.21283 * 119.99703 * 121.97746 * 5 4 3 7 7 N 1.34771 * 119.99574 * 301.98207 * 5 4 3 8 8 C 1.46926 * 120.63659 * 354.84851 * 7 5 4 9 9 C 1.53192 * 108.77846 * 233.59029 * 8 7 5 10 10 C 1.53042 * 109.31312 * 305.36662 * 9 8 7 11 11 C 1.53039 * 109.53794 * 61.35998 * 10 9 8 12 12 H 1.08998 * 109.49463 * 58.62307 * 11 10 9 13 13 C 1.50708 * 109.49260 * 178.68505 * 11 10 9 14 14 H 1.08002 * 119.99609 * 120.00805 * 13 11 10 15 15 C 1.37878 * 120.00041 * 300.00218 * 13 11 10 16 16 N 1.31510 * 119.99820 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99888 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47209 * 59.99785 * 17 15 13 19 19 H 1.48497 * 109.47039 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46769 * 299.99731 * 17 15 13 21 21 C 1.46936 * 120.62690 * 174.83276 * 7 5 4 22 22 C 1.54889 * 110.48629 * 67.60239 * 4 3 2 23 23 C 1.55242 * 102.58837 * 156.67860 * 22 4 3 24 24 C 1.54263 * 104.23181 * 322.09135 * 23 22 4 25 25 C 1.53870 * 106.60092 * 23.60477 * 24 23 22 26 26 H 1.08992 * 109.47447 * 59.99916 * 1 2 3 27 27 H 1.09003 * 109.46783 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46982 * 299.99665 * 1 2 3 29 29 H 1.09004 * 109.47651 * 60.00040 * 3 2 1 30 30 H 1.09009 * 109.46936 * 299.99835 * 3 2 1 31 31 H 1.08999 * 109.58258 * 353.37674 * 8 7 5 32 32 H 1.09002 * 109.58558 * 113.65856 * 8 7 5 33 33 H 1.08998 * 109.49985 * 185.41002 * 9 8 7 34 34 H 1.09003 * 109.49215 * 65.31203 * 9 8 7 35 35 H 1.09004 * 109.45352 * 301.34149 * 10 9 8 36 36 H 1.08994 * 109.45856 * 181.38964 * 10 9 8 37 37 H 0.97001 * 119.99681 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.58668 * 6.61932 * 21 7 5 39 39 H 1.08998 * 109.58206 * 246.19605 * 21 7 5 40 40 H 1.08995 * 110.76012 * 275.07126 * 22 4 3 41 41 H 1.09002 * 110.75397 * 38.44370 * 22 4 3 42 42 H 1.08993 * 110.47021 * 203.39829 * 23 22 4 43 43 H 1.08998 * 110.58106 * 80.82942 * 23 22 4 44 44 H 1.09004 * 110.02878 * 264.32440 * 24 23 22 45 45 H 1.08994 * 110.03569 * 142.89737 * 24 23 22 46 46 H 1.09000 * 110.03603 * 240.71871 * 25 24 23 47 47 H 1.08997 * 110.03144 * 119.28885 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9964 0.3342 1.1549 6 8 4.6525 -0.6647 0.9487 7 7 3.6794 0.6837 2.4173 8 6 2.9830 1.9480 2.6918 9 6 3.7834 2.7358 3.7337 10 6 4.0062 1.8600 4.9688 11 6 4.8120 0.6191 4.5777 12 1 5.7661 0.9252 4.1487 13 6 5.0586 -0.2264 5.8007 14 1 4.6926 -1.2418 5.8378 15 6 5.7515 0.2963 6.8720 16 7 6.1977 1.5326 6.8264 17 14 6.0577 -0.7520 8.3875 18 1 6.8399 -1.9556 8.0071 19 1 6.8193 0.0366 9.3891 20 1 4.7577 -1.1704 8.9707 21 6 4.0234 -0.1926 3.5455 22 6 4.0317 0.5911 -1.3424 23 6 5.4978 1.0964 -1.4143 24 6 5.4354 2.5251 -0.8358 25 6 4.1877 2.5813 0.0630 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8465 0.8900 30 1 1.6885 1.8464 -0.8901 31 1 2.9067 2.5299 1.7732 32 1 1.9846 1.7393 3.0762 33 1 3.2297 3.6308 4.0173 34 1 4.7470 3.0219 3.3120 35 1 3.0424 1.5539 5.3755 36 1 4.5542 2.4266 5.7216 37 1 6.6848 1.9005 7.5802 38 1 4.6333 -1.0232 3.1902 39 1 3.1107 -0.5759 4.0018 40 1 3.9965 -0.4980 -1.3196 41 1 3.4475 0.9802 -2.1765 42 1 5.8433 1.1181 -2.4478 43 1 6.1499 0.4677 -0.8081 44 1 5.3466 3.2515 -1.6437 45 1 6.3295 2.7288 -0.2467 46 1 3.4934 3.3349 -0.3086 47 1 4.4763 2.8122 1.0884 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:57 Heat of formation + Delta-G solvation = -90.046646 kcal Electronic energy + Delta-G solvation = -26133.627183 eV Core-core repulsion = 22701.943550 eV Total energy + Delta-G solvation = -3431.683633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64336 -37.88055 -37.12480 -36.25334 -33.54171 -31.48967 -30.92868 -29.84884 -28.58287 -26.75734 -25.10658 -24.99401 -24.14730 -21.76290 -21.45393 -20.42301 -19.32238 -18.05917 -16.97335 -16.34232 -16.05792 -15.86459 -15.43331 -15.26250 -14.80183 -14.54225 -14.10858 -13.64350 -13.47991 -13.30716 -13.08082 -12.76492 -12.69659 -12.31333 -12.05951 -11.97493 -11.56826 -11.38042 -11.24533 -10.98569 -10.93035 -10.89490 -10.78045 -10.71723 -10.66152 -10.36061 -10.25581 -9.96168 -9.75337 -9.63309 -9.38987 -9.05529 -8.76866 -8.35719 -7.78717 -5.99669 -4.06473 3.19113 3.32924 3.37062 3.40062 3.54244 3.71884 4.44419 4.48026 4.62296 4.75115 5.01197 5.09292 5.14117 5.26217 5.27613 5.31077 5.40656 5.41875 5.48212 5.55070 5.59283 5.61474 5.70780 5.75654 5.84776 5.88449 5.96377 6.03699 6.16219 6.24185 6.35794 6.36770 6.45887 6.51818 6.52989 6.71740 6.86043 7.05270 7.08219 7.21001 7.36935 7.71288 7.95982 8.09759 8.13534 8.41101 8.80255 8.97336 9.58151 11.05786 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.004627 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.442551 B = 6050.082605 C = 6408.926996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.067 3.933 4 C -0.082 4.082 5 C 0.536 3.464 6 O -0.544 6.544 7 N -0.601 5.601 8 C 0.099 3.901 9 C -0.135 4.135 10 C -0.111 4.111 11 C 0.041 3.959 12 H 0.029 0.971 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.120 3.880 22 C -0.093 4.093 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.119 4.119 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.034 0.966 36 H 0.095 0.905 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 5.420 -14.962 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.009 4.009 4 C -0.086 4.086 5 C 0.323 3.677 6 O -0.422 6.422 7 N -0.332 5.332 8 C -0.024 4.024 9 C -0.174 4.174 10 C -0.149 4.149 11 C 0.022 3.978 12 H 0.047 0.953 13 C -0.552 4.552 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.001 4.001 22 C -0.131 4.131 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.157 4.157 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.840 4.845 -14.941 18.023 hybrid contribution -0.189 -0.128 1.009 1.034 sum -9.029 4.717 -13.932 17.259 Atomic orbital electron populations 1.22722 0.81241 1.02764 0.99689 1.87987 1.19380 1.27189 1.95301 1.22861 0.91694 0.85484 1.00910 1.21656 0.93892 0.96712 0.96324 1.19877 0.79298 0.85255 0.83270 1.90618 1.39537 1.27629 1.84377 1.48125 1.57497 1.21188 1.06433 1.22069 0.95644 0.85406 0.99325 1.22026 0.99300 0.98162 0.97867 1.21619 0.99379 0.98091 0.95848 1.18956 0.93944 0.92425 0.92499 0.95314 1.21054 1.35272 0.98789 1.00065 0.92585 1.24924 0.95350 0.95007 0.98474 1.69861 1.37644 1.13977 1.31385 0.86650 0.78331 0.80417 0.82563 1.20230 1.21331 1.20286 1.21944 0.99211 0.93412 0.85564 1.22379 0.95349 1.01902 0.93438 1.22435 0.97311 0.95939 1.00618 1.22114 0.97706 0.97524 0.98644 1.22389 0.97386 0.94063 1.01862 0.94310 0.89679 0.94084 0.91941 0.92679 0.90247 0.92409 0.92557 0.92348 0.94673 0.88660 0.92974 0.90402 0.92961 0.89918 0.91472 0.91851 0.90667 0.91770 0.91516 0.90815 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.39 10.09 -35.23 -0.36 -5.75 16 3 C 0.07 0.82 4.38 37.16 0.16 0.99 16 4 C -0.08 -1.17 0.35 -154.00 -0.05 -1.23 16 5 C 0.54 10.18 5.83 -10.98 -0.06 10.12 16 6 O -0.54 -12.32 14.50 5.56 0.08 -12.23 16 7 N -0.60 -11.52 2.96 -172.76 -0.51 -12.03 16 8 C 0.10 1.56 3.96 -3.71 -0.01 1.55 16 9 C -0.14 -2.40 5.95 -26.61 -0.16 -2.56 16 10 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 11 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 12 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 13 C -0.51 -14.07 8.56 -34.44 -0.29 -14.37 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.08 11.31 55.43 0.63 -24.46 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 C 0.12 2.69 5.66 -3.71 -0.02 2.67 16 22 C -0.09 -1.26 5.41 -24.55 -0.13 -1.39 16 23 C -0.13 -1.62 6.53 -24.88 -0.16 -1.79 16 24 C -0.12 -1.43 6.80 -25.62 -0.17 -1.60 16 25 C -0.12 -1.44 4.57 -25.62 -0.12 -1.56 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.72 5.14 -51.93 -0.27 0.46 16 30 H 0.06 0.54 8.07 -51.92 -0.42 0.12 16 31 H 0.08 1.03 3.13 -51.93 -0.16 0.87 16 32 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.08 7.71 -51.93 -0.40 0.68 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.08 1.89 7.00 -51.93 -0.36 1.53 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 41 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.18 7.64 -51.93 -0.40 0.78 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 47 H 0.08 1.13 5.42 -51.93 -0.28 0.85 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -31.12 350.24 -8.26 -39.38 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.00 Total: 1.45 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.35 Total: -7.90 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.12 Total: -36.49 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.27 Total: -17.98 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.12 -8.26 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.668 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds