Wall clock time and date at job start Tue Mar 31 2020 08:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99861 * 2 1 4 4 C 1.52999 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.50707 * 110.43230 * 305.06656 * 4 3 2 6 6 O 1.21283 * 119.99703 * 121.97746 * 5 4 3 7 7 N 1.34771 * 119.99574 * 301.98207 * 5 4 3 8 8 C 1.46926 * 120.63659 * 354.84851 * 7 5 4 9 9 C 1.53192 * 108.77846 * 233.59029 * 8 7 5 10 10 C 1.53042 * 109.31312 * 305.36662 * 9 8 7 11 11 C 1.53039 * 109.53794 * 61.35998 * 10 9 8 12 12 H 1.08998 * 109.49463 * 58.62307 * 11 10 9 13 13 C 1.50708 * 109.49260 * 178.68505 * 11 10 9 14 14 H 1.08002 * 119.99609 * 120.00805 * 13 11 10 15 15 C 1.37878 * 120.00041 * 300.00218 * 13 11 10 16 16 N 1.31510 * 119.99820 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99888 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47209 * 59.99785 * 17 15 13 19 19 H 1.48497 * 109.47039 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46769 * 299.99731 * 17 15 13 21 21 C 1.46936 * 120.62690 * 174.83276 * 7 5 4 22 22 C 1.54889 * 110.48629 * 67.60239 * 4 3 2 23 23 C 1.55242 * 102.58837 * 156.67860 * 22 4 3 24 24 C 1.54263 * 104.23181 * 322.09135 * 23 22 4 25 25 C 1.53870 * 106.60092 * 23.60477 * 24 23 22 26 26 H 1.08992 * 109.47447 * 59.99916 * 1 2 3 27 27 H 1.09003 * 109.46783 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46982 * 299.99665 * 1 2 3 29 29 H 1.09004 * 109.47651 * 60.00040 * 3 2 1 30 30 H 1.09009 * 109.46936 * 299.99835 * 3 2 1 31 31 H 1.08999 * 109.58258 * 353.37674 * 8 7 5 32 32 H 1.09002 * 109.58558 * 113.65856 * 8 7 5 33 33 H 1.08998 * 109.49985 * 185.41002 * 9 8 7 34 34 H 1.09003 * 109.49215 * 65.31203 * 9 8 7 35 35 H 1.09004 * 109.45352 * 301.34149 * 10 9 8 36 36 H 1.08994 * 109.45856 * 181.38964 * 10 9 8 37 37 H 0.97001 * 119.99681 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.58668 * 6.61932 * 21 7 5 39 39 H 1.08998 * 109.58206 * 246.19605 * 21 7 5 40 40 H 1.08995 * 110.76012 * 275.07126 * 22 4 3 41 41 H 1.09002 * 110.75397 * 38.44370 * 22 4 3 42 42 H 1.08993 * 110.47021 * 203.39829 * 23 22 4 43 43 H 1.08998 * 110.58106 * 80.82942 * 23 22 4 44 44 H 1.09004 * 110.02878 * 264.32440 * 24 23 22 45 45 H 1.08994 * 110.03569 * 142.89737 * 24 23 22 46 46 H 1.09000 * 110.03603 * 240.71871 * 25 24 23 47 47 H 1.08997 * 110.03144 * 119.28885 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9964 0.3342 1.1549 6 8 4.6525 -0.6647 0.9487 7 7 3.6794 0.6837 2.4173 8 6 2.9830 1.9480 2.6918 9 6 3.7834 2.7358 3.7337 10 6 4.0062 1.8600 4.9688 11 6 4.8120 0.6191 4.5777 12 1 5.7661 0.9252 4.1487 13 6 5.0586 -0.2264 5.8007 14 1 4.6926 -1.2418 5.8378 15 6 5.7515 0.2963 6.8720 16 7 6.1977 1.5326 6.8264 17 14 6.0577 -0.7520 8.3875 18 1 6.8399 -1.9556 8.0071 19 1 6.8193 0.0366 9.3891 20 1 4.7577 -1.1704 8.9707 21 6 4.0234 -0.1926 3.5455 22 6 4.0317 0.5911 -1.3424 23 6 5.4978 1.0964 -1.4143 24 6 5.4354 2.5251 -0.8358 25 6 4.1877 2.5813 0.0630 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8465 0.8900 30 1 1.6885 1.8464 -0.8901 31 1 2.9067 2.5299 1.7732 32 1 1.9846 1.7393 3.0762 33 1 3.2297 3.6308 4.0173 34 1 4.7470 3.0219 3.3120 35 1 3.0424 1.5539 5.3755 36 1 4.5542 2.4266 5.7216 37 1 6.6848 1.9005 7.5802 38 1 4.6333 -1.0232 3.1902 39 1 3.1107 -0.5759 4.0018 40 1 3.9965 -0.4980 -1.3196 41 1 3.4475 0.9802 -2.1765 42 1 5.8433 1.1181 -2.4478 43 1 6.1499 0.4677 -0.8081 44 1 5.3466 3.2515 -1.6437 45 1 6.3295 2.7288 -0.2467 46 1 3.4934 3.3349 -0.3086 47 1 4.4763 2.8122 1.0884 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:56 Heat of formation + Delta-G solvation = -109.483256 kcal Electronic energy + Delta-G solvation = -26134.470018 eV Core-core repulsion = 22701.943550 eV Total energy + Delta-G solvation = -3432.526468 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94979 -39.16924 -38.38734 -37.58349 -35.42558 -33.18129 -32.37725 -31.28227 -29.62441 -27.60817 -27.02019 -26.50170 -25.16619 -23.42991 -22.89243 -21.41840 -20.94739 -19.53539 -18.48616 -17.93355 -17.28487 -16.91873 -16.66102 -16.57076 -16.37588 -15.82822 -15.60310 -15.09569 -14.91171 -14.56930 -14.55483 -14.22063 -14.03702 -13.72211 -13.60929 -13.28400 -12.87909 -12.70514 -12.62885 -12.43733 -12.39638 -12.23964 -12.05396 -11.91247 -11.88732 -11.81776 -11.69530 -11.53890 -11.28535 -11.22114 -10.85878 -10.66082 -10.47622 -10.30473 -9.44422 -8.11650 -6.27082 1.39732 1.41618 1.49030 1.75217 2.12915 2.42990 2.78792 3.14375 3.38049 3.60723 3.71282 3.93299 4.07393 4.18969 4.24013 4.25946 4.39135 4.47907 4.49630 4.54655 4.55057 4.57973 4.60804 4.65721 4.72132 4.77622 4.83312 4.84593 4.89076 4.91737 4.96324 5.07246 5.09655 5.12439 5.23309 5.30956 5.35361 5.48148 5.52058 5.58088 5.59730 5.92008 6.12607 6.26799 6.33685 6.63674 6.81576 7.31270 7.40842 8.91789 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.004627 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.442551 B = 6050.082605 C = 6408.926996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.066 3.934 4 C -0.080 4.080 5 C 0.525 3.475 6 O -0.595 6.595 7 N -0.605 5.605 8 C 0.100 3.900 9 C -0.127 4.127 10 C -0.104 4.104 11 C 0.044 3.956 12 H -0.016 1.016 13 C -0.541 4.541 14 H 0.049 0.951 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.133 3.867 22 C -0.090 4.090 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.262 0.738 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.031 0.969 44 H 0.100 0.900 45 H 0.050 0.950 46 H 0.120 0.880 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 7.748 -16.466 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.010 4.010 4 C -0.083 4.083 5 C 0.315 3.685 6 O -0.476 6.476 7 N -0.336 5.336 8 C -0.021 4.021 9 C -0.165 4.165 10 C -0.142 4.142 11 C 0.025 3.975 12 H 0.002 0.998 13 C -0.579 4.579 14 H 0.067 0.933 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.192 1.192 21 C 0.010 3.990 22 C -0.128 4.128 23 C -0.165 4.165 24 C -0.157 4.157 25 C -0.156 4.156 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.050 0.950 44 H 0.118 0.882 45 H 0.069 0.931 46 H 0.138 0.862 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.237 7.202 -16.449 21.182 hybrid contribution 0.597 -0.916 1.463 1.827 sum -10.639 6.286 -14.986 19.424 Atomic orbital electron populations 1.22892 0.79354 1.03370 1.01230 1.87955 1.21584 1.28581 1.95635 1.22991 0.89545 0.85287 1.03222 1.21741 0.95974 0.96826 0.93782 1.20965 0.78095 0.85211 0.84233 1.90590 1.41678 1.30135 1.85154 1.48205 1.57731 1.21943 1.05746 1.22326 0.95373 0.83824 1.00623 1.21936 0.99829 0.98769 0.95982 1.21408 0.98180 0.97186 0.97468 1.18841 0.92700 0.93780 0.92185 0.99826 1.21403 1.36075 0.98975 1.01472 0.93286 1.25668 0.94978 0.96174 1.01196 1.69994 1.37784 1.15172 1.32129 0.85668 0.78515 0.78698 0.79113 1.20326 1.20504 1.19244 1.21476 0.98324 0.92908 0.86288 1.22389 0.96055 0.99930 0.94385 1.22422 0.96501 0.96271 1.01335 1.22135 0.97040 0.97128 0.99442 1.22470 0.98321 0.93521 1.01281 0.91821 0.89768 0.93344 0.90982 0.88740 0.86297 0.90646 0.88838 0.93529 0.94538 0.91743 0.92863 0.93633 0.92602 0.93384 0.87802 0.89460 0.95013 0.88155 0.93145 0.86182 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.72 16 2 O -0.42 -10.92 10.09 -148.98 -1.50 -12.42 16 3 C 0.07 1.34 4.38 71.98 0.31 1.66 16 4 C -0.08 -2.10 0.35 -51.85 -0.02 -2.12 16 5 C 0.53 20.35 5.83 87.66 0.51 20.86 16 6 O -0.59 -28.76 14.50 -3.04 -0.04 -28.80 16 7 N -0.61 -23.48 2.96 -818.89 -2.43 -25.91 16 8 C 0.10 2.93 3.96 86.36 0.34 3.28 16 9 C -0.13 -4.33 5.95 30.67 0.18 -4.15 16 10 C -0.10 -4.78 4.96 30.62 0.15 -4.63 16 11 C 0.04 2.32 2.25 -11.46 -0.03 2.29 16 12 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 13 C -0.54 -31.00 8.56 25.60 0.22 -30.78 16 14 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 15 C 0.02 1.08 5.30 84.66 0.45 1.53 16 16 N -0.91 -52.90 11.31 21.45 0.24 -52.65 16 17 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 C 0.13 6.28 5.66 86.36 0.49 6.77 16 22 C -0.09 -2.29 5.41 32.01 0.17 -2.11 16 23 C -0.13 -3.21 6.53 31.79 0.21 -3.00 16 24 C -0.12 -2.50 6.80 31.32 0.21 -2.28 16 25 C -0.12 -2.44 4.57 31.32 0.14 -2.30 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.31 5.14 -2.39 -0.01 1.29 16 30 H 0.09 1.24 8.07 -2.38 -0.02 1.22 16 31 H 0.12 2.59 3.13 -2.39 -0.01 2.59 16 32 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.05 1.70 7.71 -2.39 -0.02 1.68 16 35 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.06 3.37 6.04 -2.39 -0.01 3.35 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.05 2.40 7.00 -2.39 -0.02 2.39 16 39 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.05 1.56 7.42 -2.39 -0.02 1.54 16 41 H 0.10 1.88 8.01 -2.39 -0.02 1.86 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.03 1.05 7.64 -2.39 -0.02 1.03 16 44 H 0.10 1.40 8.14 -2.38 -0.02 1.39 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 46 H 0.12 1.43 7.84 -2.39 -0.02 1.41 16 47 H 0.07 1.61 5.42 -2.39 -0.01 1.60 16 Total: -1.00 -74.55 350.24 3.84 -70.71 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.94 Total: 15.83 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 4.60 Total: -13.26 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.18 Total: -78.56 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.55 Total: -41.22 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -74.55 3.84 -70.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.770 kcal (2) G-P(sol) polarization free energy of solvation -74.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds