Wall clock time and date at job start Tue Mar 31 2020 07:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00064 * 2 1 4 4 C 1.50704 * 119.99968 * 179.97438 * 2 1 3 5 5 H 1.08999 * 109.47058 * 355.00882 * 4 2 1 6 6 C 1.53003 * 109.46745 * 115.00440 * 4 2 1 7 7 C 1.50704 * 109.47154 * 185.00027 * 6 4 2 8 8 O 1.21277 * 119.99638 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00049 * 179.97438 * 7 6 4 10 10 C 1.46930 * 120.63086 * 0.02562 * 9 7 6 11 11 C 1.53186 * 108.77576 * 233.58470 * 10 9 7 12 12 C 1.53045 * 109.31590 * 305.36535 * 11 10 9 13 13 C 1.53041 * 109.53408 * 61.36576 * 12 11 10 14 14 H 1.09002 * 109.50018 * 58.58675 * 13 12 11 15 15 C 1.50702 * 109.52251 * 178.67084 * 13 12 11 16 16 H 1.07992 * 120.00145 * 119.91838 * 15 13 12 17 17 C 1.37885 * 119.99546 * 299.91772 * 15 13 12 18 18 N 1.31513 * 120.00219 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99657 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47038 * 59.99904 * 19 17 15 21 21 H 1.48503 * 109.47082 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47050 * 299.99733 * 19 17 15 23 23 C 1.46929 * 120.63182 * 180.02562 * 9 7 6 24 24 O 1.42895 * 109.47401 * 235.00163 * 4 2 1 25 25 C 1.42895 * 114.00151 * 90.00433 * 24 4 2 26 26 C 1.52995 * 109.47466 * 180.02562 * 25 24 4 27 27 H 1.08006 * 119.99958 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47117 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46736 * 299.99952 * 3 2 1 31 31 H 1.08998 * 109.46829 * 59.99344 * 3 2 1 32 32 H 1.08995 * 109.47487 * 64.99797 * 6 4 2 33 33 H 1.09002 * 109.47062 * 305.00010 * 6 4 2 34 34 H 1.08992 * 109.58769 * 353.37582 * 10 9 7 35 35 H 1.09008 * 109.58247 * 113.65674 * 10 9 7 36 36 H 1.09000 * 109.49625 * 65.32030 * 11 10 9 37 37 H 1.09008 * 109.49622 * 185.41304 * 11 10 9 38 38 H 1.08997 * 109.45985 * 301.34439 * 12 11 10 39 39 H 1.09001 * 109.45708 * 181.38466 * 12 11 10 40 40 H 0.96993 * 119.99950 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.58283 * 6.62173 * 23 9 7 42 42 H 1.09002 * 109.70060 * 246.26944 * 23 9 7 43 43 H 1.09015 * 109.46878 * 300.00048 * 25 24 4 44 44 H 1.09000 * 109.47353 * 59.99661 * 25 24 4 45 45 H 1.09004 * 109.47384 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.46932 * 299.99874 * 26 25 24 47 47 H 1.09005 * 109.47582 * 59.99777 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3586 -2.1316 0.0904 6 6 2.8465 -1.4425 -1.3067 7 6 3.5010 -2.7989 -1.3602 8 8 3.3558 -3.5787 -0.4428 9 7 4.2475 -3.1453 -2.4274 10 6 4.4331 -2.2111 -3.5462 11 6 4.0368 -2.9155 -4.8476 12 6 4.8283 -4.2187 -4.9791 13 6 4.4903 -5.1432 -3.8072 14 1 3.4191 -5.3447 -3.8000 15 6 5.2450 -6.4393 -3.9544 16 1 5.9404 -6.7492 -3.1885 17 6 5.0475 -7.2295 -5.0670 18 7 4.2003 -6.8523 -5.9994 19 14 5.9824 -8.8364 -5.2490 20 1 5.6546 -9.7315 -4.1104 21 1 5.5937 -9.4937 -6.5227 22 1 7.4417 -8.5617 -5.2585 23 6 4.8914 -4.4643 -2.4943 24 8 2.9709 -1.3309 1.1042 25 6 2.4139 -1.8757 2.3020 26 6 3.4678 -1.8532 3.4108 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 3.1351 1.1059 0.0005 30 1 1.8002 1.8766 -0.8900 31 1 1.8001 1.8767 0.8899 32 1 3.6117 -0.6677 -1.3551 33 1 2.1658 -1.3339 -2.1511 34 1 3.8026 -1.3344 -3.3986 35 1 5.4781 -1.9053 -3.5973 36 1 2.9699 -3.1379 -4.8305 37 1 4.2602 -2.2670 -5.6948 38 1 5.8956 -3.9977 -4.9712 39 1 4.5662 -4.7097 -5.9163 40 1 4.0617 -7.4080 -6.7822 41 1 4.5633 -5.0741 -1.6525 42 1 5.9745 -4.3467 -2.4600 43 1 1.5536 -1.2795 2.6067 44 1 2.0981 -2.9032 2.1213 45 1 3.0431 -2.2693 4.3244 46 1 4.3282 -2.4491 3.1064 47 1 3.7833 -0.8255 3.5916 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:10 Heat of formation + Delta-G solvation = -81.959938 kcal Electronic energy + Delta-G solvation = -24857.369291 eV Core-core repulsion = 21426.036324 eV Total energy + Delta-G solvation = -3431.332967 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.83423 -38.38006 -36.57815 -35.21524 -33.48276 -31.75304 -31.27541 -30.51928 -29.48829 -27.51479 -25.26327 -24.87715 -23.19729 -22.68599 -21.64195 -19.76599 -18.91582 -18.17033 -16.91520 -16.69542 -16.17105 -15.54539 -15.46053 -14.81573 -14.62623 -14.27265 -13.96060 -13.80619 -13.47929 -13.33262 -13.10632 -12.90258 -12.64093 -12.41554 -12.29187 -12.11819 -11.97332 -11.81871 -11.63108 -11.55839 -11.06403 -10.95337 -10.85856 -10.77411 -10.70488 -10.29009 -9.94574 -9.77906 -9.46347 -9.44814 -9.36601 -9.14059 -8.81051 -8.37276 -7.83650 -6.01115 -4.08117 1.97400 3.15392 3.32035 3.36230 3.39181 3.57349 3.80709 4.43239 4.56657 4.80186 4.98991 5.03709 5.14439 5.26961 5.29025 5.33738 5.38997 5.43346 5.47205 5.52475 5.57405 5.66227 5.72239 5.79158 5.80893 5.85096 5.88991 6.01001 6.14089 6.14874 6.35262 6.38927 6.43503 6.50896 6.60164 6.69596 6.83815 7.01883 7.19377 7.33876 7.36249 7.69882 7.93728 8.07294 8.09175 8.39166 8.73977 8.95613 9.56625 11.04394 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.003594 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.472414 B = 7789.678288 C = 8530.544386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C -0.114 4.114 4 C 0.143 3.857 5 H 0.072 0.928 6 C -0.135 4.135 7 C 0.513 3.487 8 O -0.545 6.545 9 N -0.605 5.605 10 C 0.110 3.890 11 C -0.135 4.135 12 C -0.112 4.112 13 C 0.040 3.960 14 H 0.028 0.972 15 C -0.514 4.514 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.118 3.882 24 O -0.366 6.366 25 C 0.063 3.937 26 C -0.148 4.148 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.095 0.905 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.039 0.961 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 16.145 9.683 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.144 4.144 3 C -0.170 4.170 4 C 0.084 3.916 5 H 0.090 0.910 6 C -0.175 4.175 7 C 0.300 3.700 8 O -0.423 6.423 9 N -0.338 5.338 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.150 4.150 13 C 0.021 3.979 14 H 0.046 0.954 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.003 4.003 24 O -0.285 6.285 25 C -0.013 4.013 26 C -0.205 4.205 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.873 15.725 9.985 19.254 hybrid contribution 0.182 -0.892 -0.352 0.976 sum -4.692 14.833 9.632 18.298 Atomic orbital electron populations 1.23745 0.95152 1.02057 1.01607 1.22347 0.95500 0.96778 0.99800 1.20736 1.00821 0.93973 1.01504 1.20751 0.90934 0.93394 0.86496 0.90962 1.21800 1.01101 0.96863 0.97706 1.20311 0.79100 0.88530 0.82035 1.90642 1.61835 1.52976 1.36817 1.48282 1.49901 1.17480 1.18139 1.21730 1.00736 0.91584 0.87322 1.22004 1.01219 0.99170 0.94922 1.21624 0.96734 0.92546 1.04111 1.18958 0.97310 0.92984 0.88626 0.95355 1.21054 1.24573 1.04276 1.05399 0.92550 1.24933 0.95168 0.97877 0.95803 1.69861 1.35248 1.37939 1.09783 0.86642 0.80247 0.83715 0.77311 1.20235 1.21321 1.20251 1.21944 0.95537 0.81219 1.01583 1.87891 1.38266 1.83178 1.19119 1.22392 0.95961 0.97655 0.85310 1.21703 0.99663 1.02398 0.96764 0.88368 0.88181 0.91373 0.91728 0.91850 0.88400 0.87988 0.91231 0.91997 0.92419 0.92500 0.94603 0.88689 0.92946 0.90403 0.92877 0.94240 0.92884 0.91506 0.91688 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 13.95 29.01 0.40 -1.38 16 2 C -0.14 -1.54 5.05 -101.06 -0.51 -2.05 16 3 C -0.11 -1.04 9.69 36.01 0.35 -0.69 16 4 C 0.14 1.90 1.78 -27.88 -0.05 1.85 16 5 H 0.07 1.04 7.25 -51.93 -0.38 0.67 16 6 C -0.13 -1.82 3.59 -27.88 -0.10 -1.92 16 7 C 0.51 9.38 7.58 -10.99 -0.08 9.30 16 8 O -0.54 -11.78 14.83 -8.87 -0.13 -11.91 16 9 N -0.61 -11.36 2.97 -172.79 -0.51 -11.87 16 10 C 0.11 1.70 6.34 -3.71 -0.02 1.67 16 11 C -0.13 -2.38 6.08 -26.61 -0.16 -2.54 16 12 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 13 C 0.04 1.00 2.25 -91.67 -0.21 0.79 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 15 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -25.01 11.32 55.43 0.63 -24.39 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.12 2.61 5.65 -3.73 -0.02 2.59 16 24 O -0.37 -5.36 9.01 -49.66 -0.45 -5.81 16 25 C 0.06 0.81 6.46 37.16 0.24 1.05 16 26 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 27 H 0.10 0.92 7.84 -52.48 -0.41 0.51 16 28 H 0.10 0.79 8.05 -52.49 -0.42 0.37 16 29 H 0.07 0.67 7.50 -51.93 -0.39 0.28 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.18 7.46 -51.93 -0.39 0.79 16 33 H 0.10 1.20 7.69 -51.93 -0.40 0.80 16 34 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 35 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.08 1.85 7.01 -51.93 -0.36 1.49 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -30.50 373.15 -8.57 -39.08 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.41 Total: 1.03 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.30 Total: -7.91 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.11 Total: -36.26 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.58 Total: -17.72 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.50 -8.57 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.884 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds