Wall clock time and date at job start Tue Mar 31 2020 07:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00064 * 2 1 4 4 C 1.50704 * 119.99968 * 179.97438 * 2 1 3 5 5 H 1.08999 * 109.47058 * 355.00882 * 4 2 1 6 6 C 1.53003 * 109.46745 * 115.00440 * 4 2 1 7 7 C 1.50704 * 109.47154 * 185.00027 * 6 4 2 8 8 O 1.21277 * 119.99638 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00049 * 179.97438 * 7 6 4 10 10 C 1.46930 * 120.63086 * 0.02562 * 9 7 6 11 11 C 1.53186 * 108.77576 * 233.58470 * 10 9 7 12 12 C 1.53045 * 109.31590 * 305.36535 * 11 10 9 13 13 C 1.53041 * 109.53408 * 61.36576 * 12 11 10 14 14 H 1.09002 * 109.50018 * 58.58675 * 13 12 11 15 15 C 1.50702 * 109.52251 * 178.67084 * 13 12 11 16 16 H 1.07992 * 120.00145 * 119.91838 * 15 13 12 17 17 C 1.37885 * 119.99546 * 299.91772 * 15 13 12 18 18 N 1.31513 * 120.00219 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99657 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47038 * 59.99904 * 19 17 15 21 21 H 1.48503 * 109.47082 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47050 * 299.99733 * 19 17 15 23 23 C 1.46929 * 120.63182 * 180.02562 * 9 7 6 24 24 O 1.42895 * 109.47401 * 235.00163 * 4 2 1 25 25 C 1.42895 * 114.00151 * 90.00433 * 24 4 2 26 26 C 1.52995 * 109.47466 * 180.02562 * 25 24 4 27 27 H 1.08006 * 119.99958 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47117 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46736 * 299.99952 * 3 2 1 31 31 H 1.08998 * 109.46829 * 59.99344 * 3 2 1 32 32 H 1.08995 * 109.47487 * 64.99797 * 6 4 2 33 33 H 1.09002 * 109.47062 * 305.00010 * 6 4 2 34 34 H 1.08992 * 109.58769 * 353.37582 * 10 9 7 35 35 H 1.09008 * 109.58247 * 113.65674 * 10 9 7 36 36 H 1.09000 * 109.49625 * 65.32030 * 11 10 9 37 37 H 1.09008 * 109.49622 * 185.41304 * 11 10 9 38 38 H 1.08997 * 109.45985 * 301.34439 * 12 11 10 39 39 H 1.09001 * 109.45708 * 181.38466 * 12 11 10 40 40 H 0.96993 * 119.99950 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.58283 * 6.62173 * 23 9 7 42 42 H 1.09002 * 109.70060 * 246.26944 * 23 9 7 43 43 H 1.09015 * 109.46878 * 300.00048 * 25 24 4 44 44 H 1.09000 * 109.47353 * 59.99661 * 25 24 4 45 45 H 1.09004 * 109.47384 * 180.02562 * 26 25 24 46 46 H 1.08997 * 109.46932 * 299.99874 * 26 25 24 47 47 H 1.09005 * 109.47582 * 59.99777 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3586 -2.1316 0.0904 6 6 2.8465 -1.4425 -1.3067 7 6 3.5010 -2.7989 -1.3602 8 8 3.3558 -3.5787 -0.4428 9 7 4.2475 -3.1453 -2.4274 10 6 4.4331 -2.2111 -3.5462 11 6 4.0368 -2.9155 -4.8476 12 6 4.8283 -4.2187 -4.9791 13 6 4.4903 -5.1432 -3.8072 14 1 3.4191 -5.3447 -3.8000 15 6 5.2450 -6.4393 -3.9544 16 1 5.9404 -6.7492 -3.1885 17 6 5.0475 -7.2295 -5.0670 18 7 4.2003 -6.8523 -5.9994 19 14 5.9824 -8.8364 -5.2490 20 1 5.6546 -9.7315 -4.1104 21 1 5.5937 -9.4937 -6.5227 22 1 7.4417 -8.5617 -5.2585 23 6 4.8914 -4.4643 -2.4943 24 8 2.9709 -1.3309 1.1042 25 6 2.4139 -1.8757 2.3020 26 6 3.4678 -1.8532 3.4108 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 3.1351 1.1059 0.0005 30 1 1.8002 1.8766 -0.8900 31 1 1.8001 1.8767 0.8899 32 1 3.6117 -0.6677 -1.3551 33 1 2.1658 -1.3339 -2.1511 34 1 3.8026 -1.3344 -3.3986 35 1 5.4781 -1.9053 -3.5973 36 1 2.9699 -3.1379 -4.8305 37 1 4.2602 -2.2670 -5.6948 38 1 5.8956 -3.9977 -4.9712 39 1 4.5662 -4.7097 -5.9163 40 1 4.0617 -7.4080 -6.7822 41 1 4.5633 -5.0741 -1.6525 42 1 5.9745 -4.3467 -2.4600 43 1 1.5536 -1.2795 2.6067 44 1 2.0981 -2.9032 2.1213 45 1 3.0431 -2.2693 4.3244 46 1 4.3282 -2.4491 3.1064 47 1 3.7833 -0.8255 3.5916 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:09 Heat of formation + Delta-G solvation = -98.542897 kcal Electronic energy + Delta-G solvation = -24858.088382 eV Core-core repulsion = 21426.036324 eV Total energy + Delta-G solvation = -3432.052058 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22705 -39.54105 -38.16498 -36.08954 -35.35389 -33.18073 -32.65171 -31.98585 -30.78247 -28.20205 -27.12115 -26.36145 -24.50166 -23.65550 -23.28429 -21.43638 -19.84386 -19.66180 -18.49825 -17.92207 -17.71118 -16.90746 -16.68812 -16.45537 -16.11046 -15.44445 -15.10399 -15.04805 -14.81235 -14.62554 -14.50239 -14.03987 -13.96836 -13.88187 -13.57948 -13.34129 -13.13159 -12.87666 -12.76917 -12.74231 -12.63853 -12.54982 -12.45513 -11.98901 -11.90701 -11.85149 -11.74914 -11.58495 -11.25623 -10.86843 -10.66101 -10.44934 -10.42126 -10.05657 -9.44801 -8.11311 -6.26619 1.20738 1.40532 1.42055 1.49523 1.73674 2.15830 2.43516 2.79880 3.14923 3.50567 3.90817 3.93282 4.03024 4.15728 4.21097 4.26649 4.33923 4.38583 4.42381 4.49428 4.52819 4.57466 4.66689 4.75364 4.79761 4.84016 4.87387 4.88813 4.95520 4.99875 5.03364 5.09143 5.13546 5.21007 5.24265 5.30217 5.49235 5.58850 5.60752 5.65118 5.84593 5.93155 6.13671 6.34467 6.35106 6.61837 6.82623 7.29216 7.41378 8.92139 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.003594 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.472414 B = 7789.678288 C = 8530.544386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.154 4.154 3 C -0.109 4.109 4 C 0.140 3.860 5 H 0.050 0.950 6 C -0.124 4.124 7 C 0.504 3.496 8 O -0.587 6.587 9 N -0.611 5.611 10 C 0.109 3.891 11 C -0.127 4.127 12 C -0.106 4.106 13 C 0.042 3.958 14 H -0.014 1.014 15 C -0.541 4.541 16 H 0.050 0.950 17 C 0.018 3.982 18 N -0.912 5.912 19 Si 0.955 3.045 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.268 1.268 23 C 0.132 3.868 24 O -0.384 6.384 25 C 0.061 3.939 26 C -0.143 4.143 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.262 0.738 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 18.859 9.599 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C -0.166 4.166 4 C 0.082 3.918 5 H 0.068 0.932 6 C -0.164 4.164 7 C 0.294 3.706 8 O -0.468 6.468 9 N -0.343 5.343 10 C -0.012 4.012 11 C -0.165 4.165 12 C -0.144 4.144 13 C 0.023 3.977 14 H 0.004 0.996 15 C -0.580 4.580 16 H 0.068 0.932 17 C -0.181 4.181 18 N -0.551 5.551 19 Si 0.780 3.220 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.193 1.193 23 C 0.009 3.991 24 O -0.303 6.303 25 C -0.016 4.016 26 C -0.201 4.201 27 H 0.112 0.888 28 H 0.140 0.860 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.914 18.469 9.889 21.519 hybrid contribution 0.136 -1.786 -0.302 1.817 sum -4.778 16.683 9.587 19.826 Atomic orbital electron populations 1.23921 0.94849 1.02909 0.99809 1.22224 0.95717 0.96002 1.01460 1.20732 1.00002 0.93160 1.02707 1.20793 0.90526 0.94406 0.86100 0.93163 1.21858 1.01832 0.93794 0.98894 1.21256 0.78315 0.90023 0.81014 1.90625 1.63064 1.54723 1.38403 1.48373 1.49759 1.16577 1.19561 1.21988 1.02911 0.91722 0.84606 1.21913 0.99567 0.97294 0.97750 1.21421 0.97459 0.94421 1.01098 1.18857 0.94254 0.93366 0.91228 0.99631 1.21423 1.25024 1.05965 1.05539 0.93151 1.25679 0.95989 1.00992 0.95451 1.69996 1.36123 1.38961 1.10045 0.85669 0.79340 0.79726 0.77273 1.20218 1.20623 1.19286 1.21476 0.95783 0.82990 0.98872 1.87853 1.39370 1.83259 1.19864 1.22473 0.97142 0.96595 0.85359 1.21703 0.98530 1.02868 0.96956 0.88840 0.85996 0.92180 0.89988 0.91164 0.85929 0.85529 0.86710 0.90223 0.93574 0.89106 0.94550 0.91946 0.92893 0.93256 0.92511 0.92455 0.95237 0.89389 0.93694 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 13.95 67.78 0.95 -1.95 16 2 C -0.15 -2.89 5.05 -16.49 -0.08 -2.97 16 3 C -0.11 -1.62 9.69 71.24 0.69 -0.93 16 4 C 0.14 3.57 1.78 29.85 0.05 3.63 16 5 H 0.05 1.47 7.25 -2.39 -0.02 1.46 16 6 C -0.12 -3.09 3.59 29.85 0.11 -2.98 16 7 C 0.50 18.31 7.58 87.66 0.66 18.98 16 8 O -0.59 -26.38 14.83 10.78 0.16 -26.22 16 9 N -0.61 -22.60 2.97 -818.98 -2.43 -25.03 16 10 C 0.11 3.06 6.34 86.36 0.55 3.61 16 11 C -0.13 -4.26 6.08 30.67 0.19 -4.07 16 12 C -0.11 -4.80 4.96 30.62 0.15 -4.65 16 13 C 0.04 2.17 2.25 -11.47 -0.03 2.15 16 14 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 15 C -0.54 -30.62 8.56 25.60 0.22 -30.40 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 17 C 0.02 1.01 5.30 84.66 0.45 1.46 16 18 N -0.91 -52.64 11.32 21.45 0.24 -52.39 16 19 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.13 6.00 5.65 86.35 0.49 6.49 16 24 O -0.38 -11.06 9.01 -135.18 -1.22 -12.28 16 25 C 0.06 1.55 6.46 71.98 0.46 2.02 16 26 C -0.14 -3.09 10.28 71.98 0.74 -2.35 16 27 H 0.09 1.60 7.84 -2.91 -0.02 1.57 16 28 H 0.12 1.47 8.05 -2.91 -0.02 1.44 16 29 H 0.06 0.99 7.50 -2.39 -0.02 0.97 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 2.48 7.46 -2.39 -0.02 2.46 16 33 H 0.13 2.53 7.69 -2.39 -0.02 2.52 16 34 H 0.11 2.24 5.93 -2.39 -0.01 2.22 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 3.24 6.05 -2.39 -0.01 3.23 16 40 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.05 2.49 7.01 -2.39 -0.02 2.47 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 45 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -70.35 373.15 5.29 -65.07 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.91 Total: 16.68 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 5.60 Total: -11.96 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.19 Total: -77.42 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.06 Total: -38.50 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.35 5.29 -65.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.477 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds