Wall clock time and date at job start Tue Mar 31 2020 07:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00355 * 2 1 4 4 C 1.50701 * 120.00080 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47060 * 354.99792 * 4 2 1 6 6 C 1.53002 * 109.47419 * 114.99873 * 4 2 1 7 7 C 1.50696 * 109.47344 * 184.99983 * 6 4 2 8 8 O 1.21278 * 119.99753 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00023 * 179.97438 * 7 6 4 10 10 C 1.46923 * 120.63284 * 0.02562 * 9 7 6 11 11 C 1.53188 * 108.77859 * 126.36420 * 10 9 7 12 12 C 1.53044 * 109.31028 * 54.63665 * 11 10 9 13 13 C 1.53041 * 109.53726 * 298.63633 * 12 11 10 14 14 H 1.09001 * 109.49704 * 301.37624 * 13 12 11 15 15 C 1.50705 * 109.49372 * 181.31633 * 13 12 11 16 16 H 1.07998 * 119.99637 * 239.99586 * 15 13 12 17 17 C 1.37878 * 120.00179 * 60.00421 * 15 13 12 18 18 N 1.31513 * 120.00064 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00188 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46826 * 59.99504 * 19 17 15 21 21 H 1.48494 * 109.47336 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46988 * 299.99725 * 19 17 15 23 23 C 1.46930 * 120.63001 * 179.71894 * 9 7 6 24 24 O 1.42903 * 109.46878 * 234.99662 * 4 2 1 25 25 C 1.42901 * 113.99972 * 90.00037 * 24 4 2 26 26 C 1.53001 * 109.47367 * 179.97438 * 25 24 4 27 27 H 1.07996 * 119.99789 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99751 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47423 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47092 * 300.00503 * 3 2 1 31 31 H 1.09006 * 109.46435 * 59.99858 * 3 2 1 32 32 H 1.09008 * 109.46873 * 305.00091 * 6 4 2 33 33 H 1.08997 * 109.47047 * 64.99780 * 6 4 2 34 34 H 1.09002 * 109.58786 * 246.15384 * 10 9 7 35 35 H 1.09005 * 109.58646 * 6.43597 * 10 9 7 36 36 H 1.08999 * 109.50327 * 174.58653 * 11 10 9 37 37 H 1.08996 * 109.50094 * 294.68710 * 11 10 9 38 38 H 1.08999 * 109.46030 * 58.65686 * 12 11 10 39 39 H 1.09004 * 109.46069 * 178.62574 * 12 11 10 40 40 H 0.96998 * 120.00676 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58533 * 353.42627 * 23 9 7 42 42 H 1.09008 * 109.58537 * 113.84623 * 23 9 7 43 43 H 1.08999 * 109.46765 * 300.00001 * 25 24 4 44 44 H 1.09003 * 109.47264 * 59.99735 * 25 24 4 45 45 H 1.08999 * 109.46850 * 300.00261 * 26 25 24 46 46 H 1.09003 * 109.46783 * 59.99884 * 26 25 24 47 47 H 1.08998 * 109.47155 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1317 0.0887 6 6 2.8465 -1.4415 -1.3080 7 6 3.5009 -2.7978 -1.3625 8 8 3.3550 -3.5787 -0.4462 9 7 4.2474 -3.1434 -2.4301 10 6 4.4329 -2.2084 -3.5481 11 6 5.9334 -2.0385 -3.8051 12 6 6.5683 -3.4138 -4.0240 13 6 6.3871 -4.2670 -2.7665 14 1 6.8476 -3.7641 -1.9161 15 6 7.0407 -5.6095 -2.9711 16 1 6.4504 -6.5119 -2.9127 17 6 8.3923 -5.6855 -3.2328 18 7 9.1111 -4.5864 -3.3043 19 14 9.2026 -7.3494 -3.4858 20 1 8.5739 -8.0353 -4.6432 21 1 10.6513 -7.1594 -3.7508 22 1 9.0266 -8.1764 -2.2650 23 6 4.8967 -4.4598 -2.4949 24 8 2.9709 -1.3316 1.1030 25 6 2.4140 -1.8774 2.3005 26 6 3.4684 -1.8569 3.4090 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 3.1351 1.1059 -0.0005 30 1 1.8002 1.8767 -0.8899 31 1 1.8002 1.8766 0.8901 32 1 2.1656 -1.3323 -2.1523 33 1 3.6116 -0.6667 -1.3557 34 1 3.9520 -2.6070 -4.4415 35 1 3.9919 -1.2442 -3.2951 36 1 6.0833 -1.4234 -4.6924 37 1 6.3976 -1.5563 -2.9449 38 1 6.0868 -3.9057 -4.8691 39 1 7.6317 -3.2940 -4.2313 40 1 10.0619 -4.6398 -3.4888 41 1 4.7638 -4.9799 -1.5463 42 1 4.4544 -5.0461 -3.3005 43 1 1.5538 -1.2815 2.6056 44 1 2.0982 -2.9048 2.1190 45 1 4.3282 -2.4530 3.1036 46 1 3.7845 -0.8296 3.5906 47 1 3.0434 -2.2728 4.3225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:12 Heat of formation + Delta-G solvation = -81.572121 kcal Electronic energy + Delta-G solvation = -24941.692865 eV Core-core repulsion = 21510.376714 eV Total energy + Delta-G solvation = -3431.316150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.83367 -38.36908 -36.58115 -35.20501 -33.47959 -31.73512 -31.26136 -30.50614 -29.48113 -27.50765 -25.25576 -24.87252 -23.19776 -22.64535 -21.63192 -19.75976 -18.91164 -18.16559 -16.84285 -16.76548 -16.16301 -15.52645 -15.42321 -14.90132 -14.47264 -14.32482 -13.91766 -13.77996 -13.47466 -13.31248 -13.21316 -12.84159 -12.56314 -12.45226 -12.23792 -12.09063 -11.96657 -11.80692 -11.63987 -11.52105 -11.04103 -10.95130 -10.82119 -10.76446 -10.70432 -10.27337 -9.93571 -9.76984 -9.43986 -9.43251 -9.37318 -9.14546 -8.79600 -8.36054 -7.83532 -5.99680 -4.06871 1.96321 3.14881 3.32659 3.36973 3.39710 3.57036 3.84286 4.44060 4.56400 4.79904 4.98447 5.04203 5.18807 5.27097 5.31296 5.34974 5.42701 5.44630 5.50435 5.52739 5.56606 5.66996 5.72386 5.81554 5.81811 5.87272 5.90678 6.05644 6.14673 6.22432 6.36211 6.38087 6.44661 6.52384 6.60204 6.69735 6.85552 7.03091 7.20450 7.36002 7.38650 7.71130 7.95606 8.07907 8.10518 8.40234 8.73978 8.96816 9.57796 11.05778 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.003733 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.793533 B = 7497.998181 C = 8171.061821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C -0.115 4.115 4 C 0.143 3.857 5 H 0.071 0.929 6 C -0.135 4.135 7 C 0.513 3.487 8 O -0.545 6.545 9 N -0.606 5.606 10 C 0.109 3.891 11 C -0.135 4.135 12 C -0.112 4.112 13 C 0.039 3.961 14 H 0.029 0.971 15 C -0.514 4.514 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.119 3.881 24 O -0.364 6.364 25 C 0.064 3.936 26 C -0.149 4.149 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.035 0.965 39 H 0.095 0.905 40 H 0.261 0.739 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.832 11.562 4.243 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.142 4.142 3 C -0.172 4.172 4 C 0.084 3.916 5 H 0.089 0.911 6 C -0.175 4.175 7 C 0.300 3.700 8 O -0.423 6.423 9 N -0.338 5.338 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.150 4.150 13 C 0.020 3.980 14 H 0.047 0.953 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.002 4.002 24 O -0.282 6.282 25 C -0.012 4.012 26 C -0.206 4.206 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.519 11.259 4.682 18.960 hybrid contribution 0.266 -0.852 -0.303 0.943 sum -14.253 10.406 4.379 18.183 Atomic orbital electron populations 1.23718 0.95126 1.01967 1.01991 1.22371 0.95487 0.96860 0.99467 1.20749 1.00983 0.93926 1.01508 1.20746 0.90898 0.93290 0.86654 0.91090 1.21802 1.01060 0.97066 0.97595 1.20309 0.79270 0.88507 0.81885 1.90642 1.62132 1.52987 1.36505 1.48290 1.49113 1.17707 1.18695 1.21731 0.98143 0.92253 0.89259 1.22001 0.93985 1.00669 1.00690 1.21623 1.02877 0.91602 0.98884 1.18879 0.88644 0.95892 0.94549 0.95306 1.21044 0.93427 0.92076 1.48746 0.92582 1.24931 0.97248 0.96457 0.95136 1.69861 1.06918 1.26767 1.49222 0.86644 0.78202 0.84363 0.78715 1.20281 1.21318 1.20234 1.21857 0.95405 0.81483 1.01482 1.87932 1.38107 1.83107 1.19099 1.22387 0.95958 0.97496 0.85376 1.21710 0.99726 1.02536 0.96666 0.88464 0.88202 0.91235 0.91723 0.91797 0.88193 0.88177 0.92037 0.91212 0.92526 0.92347 0.94650 0.88664 0.92943 0.90390 0.92925 0.94304 0.92989 0.91500 0.92305 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 13.95 29.02 0.40 -1.34 16 2 C -0.14 -1.51 5.05 -101.06 -0.51 -2.02 16 3 C -0.12 -1.09 9.69 36.01 0.35 -0.74 16 4 C 0.14 1.90 1.78 -27.88 -0.05 1.85 16 5 H 0.07 0.99 7.25 -51.93 -0.38 0.61 16 6 C -0.14 -1.83 3.59 -27.88 -0.10 -1.93 16 7 C 0.51 9.38 7.58 -10.99 -0.08 9.30 16 8 O -0.54 -11.77 14.83 -8.84 -0.13 -11.90 16 9 N -0.61 -11.36 2.98 -173.06 -0.52 -11.87 16 10 C 0.11 1.70 6.34 -3.71 -0.02 1.67 16 11 C -0.14 -2.42 6.08 -26.61 -0.16 -2.58 16 12 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 13 C 0.04 0.99 2.24 -91.89 -0.21 0.78 16 14 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.51 -14.09 8.56 -34.44 -0.29 -14.38 16 16 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.15 11.31 55.43 0.63 -24.52 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 C 0.12 2.62 5.62 -3.95 -0.02 2.60 16 24 O -0.36 -5.58 9.01 -49.64 -0.45 -6.03 16 25 C 0.06 0.85 6.46 37.16 0.24 1.09 16 26 C -0.15 -1.78 10.28 37.16 0.38 -1.40 16 27 H 0.10 0.85 7.84 -52.49 -0.41 0.44 16 28 H 0.10 0.76 8.05 -52.49 -0.42 0.34 16 29 H 0.07 0.73 7.50 -51.93 -0.39 0.34 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.09 7.94 -51.92 -0.41 0.68 16 33 H 0.10 1.29 7.21 -51.93 -0.37 0.91 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 2.44 6.04 -51.93 -0.31 2.13 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 1.86 7.01 -51.93 -0.36 1.49 16 42 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -30.76 373.09 -8.57 -39.33 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.41 Total: 1.23 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.30 Total: -8.10 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.11 Total: -36.40 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.58 Total: -17.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.76 -8.57 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.240 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds