Wall clock time and date at job start Tue Mar 31 2020 07:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00355 * 2 1 4 4 C 1.50701 * 120.00080 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47060 * 354.99792 * 4 2 1 6 6 C 1.53002 * 109.47419 * 114.99873 * 4 2 1 7 7 C 1.50696 * 109.47344 * 184.99983 * 6 4 2 8 8 O 1.21278 * 119.99753 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00023 * 179.97438 * 7 6 4 10 10 C 1.46923 * 120.63284 * 0.02562 * 9 7 6 11 11 C 1.53188 * 108.77859 * 126.36420 * 10 9 7 12 12 C 1.53044 * 109.31028 * 54.63665 * 11 10 9 13 13 C 1.53041 * 109.53726 * 298.63633 * 12 11 10 14 14 H 1.09001 * 109.49704 * 301.37624 * 13 12 11 15 15 C 1.50705 * 109.49372 * 181.31633 * 13 12 11 16 16 H 1.07998 * 119.99637 * 239.99586 * 15 13 12 17 17 C 1.37878 * 120.00179 * 60.00421 * 15 13 12 18 18 N 1.31513 * 120.00064 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00188 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46826 * 59.99504 * 19 17 15 21 21 H 1.48494 * 109.47336 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46988 * 299.99725 * 19 17 15 23 23 C 1.46930 * 120.63001 * 179.71894 * 9 7 6 24 24 O 1.42903 * 109.46878 * 234.99662 * 4 2 1 25 25 C 1.42901 * 113.99972 * 90.00037 * 24 4 2 26 26 C 1.53001 * 109.47367 * 179.97438 * 25 24 4 27 27 H 1.07996 * 119.99789 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99751 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47423 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47092 * 300.00503 * 3 2 1 31 31 H 1.09006 * 109.46435 * 59.99858 * 3 2 1 32 32 H 1.09008 * 109.46873 * 305.00091 * 6 4 2 33 33 H 1.08997 * 109.47047 * 64.99780 * 6 4 2 34 34 H 1.09002 * 109.58786 * 246.15384 * 10 9 7 35 35 H 1.09005 * 109.58646 * 6.43597 * 10 9 7 36 36 H 1.08999 * 109.50327 * 174.58653 * 11 10 9 37 37 H 1.08996 * 109.50094 * 294.68710 * 11 10 9 38 38 H 1.08999 * 109.46030 * 58.65686 * 12 11 10 39 39 H 1.09004 * 109.46069 * 178.62574 * 12 11 10 40 40 H 0.96998 * 120.00676 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58533 * 353.42627 * 23 9 7 42 42 H 1.09008 * 109.58537 * 113.84623 * 23 9 7 43 43 H 1.08999 * 109.46765 * 300.00001 * 25 24 4 44 44 H 1.09003 * 109.47264 * 59.99735 * 25 24 4 45 45 H 1.08999 * 109.46850 * 300.00261 * 26 25 24 46 46 H 1.09003 * 109.46783 * 59.99884 * 26 25 24 47 47 H 1.08998 * 109.47155 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1317 0.0887 6 6 2.8465 -1.4415 -1.3080 7 6 3.5009 -2.7978 -1.3625 8 8 3.3550 -3.5787 -0.4462 9 7 4.2474 -3.1434 -2.4301 10 6 4.4329 -2.2084 -3.5481 11 6 5.9334 -2.0385 -3.8051 12 6 6.5683 -3.4138 -4.0240 13 6 6.3871 -4.2670 -2.7665 14 1 6.8476 -3.7641 -1.9161 15 6 7.0407 -5.6095 -2.9711 16 1 6.4504 -6.5119 -2.9127 17 6 8.3923 -5.6855 -3.2328 18 7 9.1111 -4.5864 -3.3043 19 14 9.2026 -7.3494 -3.4858 20 1 8.5739 -8.0353 -4.6432 21 1 10.6513 -7.1594 -3.7508 22 1 9.0266 -8.1764 -2.2650 23 6 4.8967 -4.4598 -2.4949 24 8 2.9709 -1.3316 1.1030 25 6 2.4140 -1.8774 2.3005 26 6 3.4684 -1.8569 3.4090 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 3.1351 1.1059 -0.0005 30 1 1.8002 1.8767 -0.8899 31 1 1.8002 1.8766 0.8901 32 1 2.1656 -1.3323 -2.1523 33 1 3.6116 -0.6667 -1.3557 34 1 3.9520 -2.6070 -4.4415 35 1 3.9919 -1.2442 -3.2951 36 1 6.0833 -1.4234 -4.6924 37 1 6.3976 -1.5563 -2.9449 38 1 6.0868 -3.9057 -4.8691 39 1 7.6317 -3.2940 -4.2313 40 1 10.0619 -4.6398 -3.4888 41 1 4.7638 -4.9799 -1.5463 42 1 4.4544 -5.0461 -3.3005 43 1 1.5538 -1.2815 2.6056 44 1 2.0982 -2.9048 2.1190 45 1 4.3282 -2.4530 3.1036 46 1 3.7845 -0.8296 3.5906 47 1 3.0434 -2.2728 4.3225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:12 Heat of formation + Delta-G solvation = -98.534061 kcal Electronic energy + Delta-G solvation = -24942.428389 eV Core-core repulsion = 21510.376714 eV Total energy + Delta-G solvation = -3432.051675 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22694 -39.54157 -38.17296 -36.08839 -35.35524 -33.18112 -32.65261 -31.99906 -30.78960 -28.20580 -27.12055 -26.35835 -24.50022 -23.66471 -23.28537 -21.43428 -19.83080 -19.66405 -18.48765 -17.93755 -17.72131 -16.86940 -16.68939 -16.49587 -16.07237 -15.44680 -15.09031 -15.00057 -14.80694 -14.70720 -14.53856 -14.04002 -13.94311 -13.83650 -13.58640 -13.35851 -13.15303 -12.86888 -12.79661 -12.72371 -12.63828 -12.53885 -12.46391 -11.99694 -11.91365 -11.84081 -11.72817 -11.58834 -11.25661 -10.86810 -10.65815 -10.44177 -10.42269 -10.04634 -9.44657 -8.10908 -6.26662 1.22016 1.40446 1.42220 1.49655 1.73261 2.16750 2.43611 2.82252 3.15164 3.51249 3.91106 3.93616 4.02900 4.15829 4.20941 4.26538 4.32903 4.37879 4.46496 4.48448 4.51758 4.55967 4.67486 4.75168 4.80242 4.84185 4.86074 4.89217 4.94679 4.99558 5.02407 5.09540 5.13824 5.20807 5.23117 5.30021 5.49129 5.58931 5.60620 5.66316 5.85389 5.93272 6.14238 6.34204 6.37661 6.62174 6.82908 7.29559 7.41465 8.92553 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.003733 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.793533 B = 7497.998181 C = 8171.061821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C -0.111 4.111 4 C 0.139 3.861 5 H 0.058 0.942 6 C -0.125 4.125 7 C 0.504 3.496 8 O -0.587 6.587 9 N -0.611 5.611 10 C 0.109 3.891 11 C -0.128 4.128 12 C -0.105 4.105 13 C 0.041 3.959 14 H -0.018 1.018 15 C -0.540 4.540 16 H 0.051 0.949 17 C 0.017 3.983 18 N -0.913 5.913 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.277 1.277 23 C 0.132 3.868 24 O -0.390 6.390 25 C 0.063 3.937 26 C -0.146 4.146 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.262 0.738 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.066 0.934 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.781 13.367 3.208 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.168 4.168 4 C 0.081 3.919 5 H 0.076 0.924 6 C -0.164 4.164 7 C 0.294 3.706 8 O -0.468 6.468 9 N -0.343 5.343 10 C -0.012 4.012 11 C -0.166 4.166 12 C -0.143 4.143 13 C 0.022 3.978 14 H 0.000 1.000 15 C -0.579 4.579 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.552 5.552 19 Si 0.781 3.219 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.202 1.202 23 C 0.009 3.991 24 O -0.309 6.309 25 C -0.014 4.014 26 C -0.203 4.203 27 H 0.117 0.883 28 H 0.139 0.861 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.483 13.089 3.630 21.358 hybrid contribution 0.857 -1.435 0.066 1.672 sum -15.626 11.654 3.695 19.841 Atomic orbital electron populations 1.23914 0.94589 1.03056 0.99456 1.22191 0.95800 0.95795 1.01769 1.20733 0.99819 0.93523 1.02700 1.20838 0.90504 0.94602 0.85934 0.92423 1.21874 1.01715 0.93528 0.99325 1.21262 0.78657 0.89958 0.80738 1.90623 1.63519 1.54705 1.37938 1.48382 1.48850 1.16943 1.20113 1.21991 0.96542 0.93696 0.88980 1.21913 0.95375 0.97769 1.01573 1.21416 1.01354 0.94193 0.97371 1.18781 0.90049 0.95006 0.93986 1.00032 1.21420 0.94220 0.93090 1.49162 0.93033 1.25699 0.97763 0.99961 0.94782 1.70004 1.07052 1.28598 1.49540 0.85653 0.77377 0.80117 0.78762 1.19172 1.20676 1.20211 1.21389 0.93963 0.83677 1.00042 1.87893 1.39661 1.83268 1.20119 1.22459 0.96946 0.96748 0.85220 1.21721 0.98605 1.02701 0.97282 0.88344 0.86087 0.92754 0.89889 0.91254 0.84573 0.86976 0.89834 0.86795 0.89092 0.93997 0.94340 0.92026 0.92915 0.93308 0.92190 0.92146 0.94906 0.94185 0.91463 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 13.95 67.78 0.95 -1.63 16 2 C -0.16 -2.87 5.05 -16.48 -0.08 -2.95 16 3 C -0.11 -1.77 9.69 71.24 0.69 -1.08 16 4 C 0.14 3.53 1.78 29.85 0.05 3.59 16 5 H 0.06 1.58 7.25 -2.39 -0.02 1.56 16 6 C -0.13 -3.10 3.59 29.85 0.11 -2.99 16 7 C 0.50 18.30 7.58 87.66 0.66 18.96 16 8 O -0.59 -26.32 14.83 10.75 0.16 -26.16 16 9 N -0.61 -22.60 2.98 -819.83 -2.44 -25.04 16 10 C 0.11 3.07 6.34 86.36 0.55 3.62 16 11 C -0.13 -4.39 6.08 30.67 0.19 -4.20 16 12 C -0.11 -4.81 4.96 30.62 0.15 -4.66 16 13 C 0.04 2.14 2.24 -11.62 -0.03 2.11 16 14 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 15 C -0.54 -30.73 8.56 25.60 0.22 -30.51 16 16 H 0.05 2.89 7.75 -2.91 -0.02 2.87 16 17 C 0.02 0.96 5.30 84.65 0.45 1.41 16 18 N -0.91 -53.21 11.31 21.45 0.24 -52.97 16 19 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 C 0.13 6.02 5.62 86.20 0.48 6.50 16 24 O -0.39 -11.94 9.01 -135.21 -1.22 -13.16 16 25 C 0.06 1.67 6.46 71.98 0.46 2.13 16 26 C -0.15 -3.51 10.28 71.98 0.74 -2.77 16 27 H 0.10 1.44 7.84 -2.91 -0.02 1.42 16 28 H 0.12 1.32 8.05 -2.91 -0.02 1.30 16 29 H 0.05 1.03 7.50 -2.39 -0.02 1.01 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.14 2.39 7.94 -2.38 -0.02 2.37 16 33 H 0.11 2.56 7.21 -2.39 -0.02 2.55 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.11 2.25 5.93 -2.38 -0.01 2.23 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 3.24 6.04 -2.38 -0.01 3.23 16 40 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.05 2.47 7.01 -2.39 -0.02 2.45 16 42 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.03 0.97 8.09 -2.39 -0.02 0.95 16 45 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.53 373.09 5.28 -66.25 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.91 Total: 17.22 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 5.60 Total: -12.48 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.20 Total: -78.01 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -1.06 Total: -39.32 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -71.53 5.28 -66.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.282 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds