Wall clock time and date at job start Tue Mar 31 2020 08:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99854 * 2 1 4 4 C 1.50691 * 109.47188 * 298.99228 * 3 2 1 5 5 O 1.21283 * 120.00135 * 137.79255 * 4 3 2 6 6 N 1.34770 * 120.00401 * 317.79023 * 4 3 2 7 7 C 1.46932 * 120.62805 * 356.09769 * 6 4 3 8 8 C 1.53189 * 108.77664 * 233.58111 * 7 6 4 9 9 C 1.53040 * 109.31517 * 305.36745 * 8 7 6 10 10 C 1.53039 * 109.53566 * 61.36457 * 9 8 7 11 11 H 1.08997 * 109.49881 * 58.58806 * 10 9 8 12 12 C 1.50710 * 109.49518 * 178.68136 * 10 9 8 13 13 H 1.07996 * 119.99632 * 119.99695 * 12 10 9 14 14 C 1.37874 * 119.99911 * 300.00112 * 12 10 9 15 15 N 1.31515 * 119.99538 * 179.97438 * 14 12 10 16 16 Si 1.86798 * 120.00299 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.46912 * 90.00079 * 16 14 12 18 18 H 1.48496 * 109.47328 * 210.00099 * 16 14 12 19 19 H 1.48504 * 109.47127 * 330.00621 * 16 14 12 20 20 C 1.46926 * 120.63743 * 175.81885 * 6 4 3 21 21 C 1.52998 * 109.46967 * 58.99434 * 3 2 1 22 22 C 1.53006 * 109.47002 * 179.97438 * 21 3 2 23 23 C 1.53000 * 109.47370 * 299.99979 * 22 21 3 24 24 C 1.52998 * 109.47040 * 60.00045 * 23 22 21 25 25 C 1.53000 * 109.47034 * 178.99185 * 3 2 1 26 26 H 1.08995 * 109.47156 * 54.64857 * 1 2 3 27 27 H 1.09004 * 109.47231 * 174.65134 * 1 2 3 28 28 H 1.09003 * 109.46685 * 294.64593 * 1 2 3 29 29 H 1.08999 * 109.58423 * 353.37390 * 7 6 4 30 30 H 1.09004 * 109.58355 * 113.65563 * 7 6 4 31 31 H 1.09002 * 109.49685 * 65.31787 * 8 7 6 32 32 H 1.09001 * 109.50009 * 185.41311 * 8 7 6 33 33 H 1.09000 * 109.45988 * 181.38492 * 9 8 7 34 34 H 1.08992 * 109.45837 * 301.35573 * 9 8 7 35 35 H 0.96999 * 119.99693 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.58918 * 246.20579 * 20 6 4 37 37 H 1.09004 * 109.57898 * 6.62627 * 20 6 4 38 38 H 1.08998 * 109.47483 * 299.99462 * 21 3 2 39 39 H 1.08998 * 109.47366 * 59.99827 * 21 3 2 40 40 H 1.08999 * 109.46698 * 179.97438 * 22 21 3 41 41 H 1.08998 * 109.46847 * 59.99943 * 22 21 3 42 42 H 1.08998 * 109.47106 * 299.99806 * 23 22 21 43 43 H 1.08999 * 109.47049 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47483 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47366 * 59.99920 * 24 23 22 46 46 H 1.09007 * 109.47187 * 300.00354 * 25 3 2 47 47 H 1.08994 * 109.47163 * 60.00111 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5854 2.0444 -1.2427 5 8 1.2638 3.2118 -1.1739 6 7 1.5629 1.4082 -2.4305 7 6 2.0305 0.0200 -2.5452 8 6 3.0880 -0.0544 -3.6510 9 6 2.5090 0.5227 -4.9448 10 6 2.1383 1.9917 -4.7290 11 1 3.0236 2.5493 -4.4235 12 6 1.5983 2.5680 -6.0126 13 1 0.5952 2.9666 -6.0456 14 6 2.3850 2.5861 -7.1447 15 7 1.9136 3.0886 -8.2650 16 14 4.1204 1.8972 -7.0875 17 1 4.0912 0.4531 -7.4324 18 1 4.9732 2.6220 -8.0634 19 1 4.6762 2.0686 -5.7211 20 6 1.0647 2.0874 -3.6344 21 6 1.5388 2.0735 1.2364 22 6 2.1616 3.4711 1.2367 23 6 3.6865 3.3499 1.2624 24 6 4.1580 2.5819 0.0260 25 6 3.5352 1.1847 0.0254 26 1 -0.3633 0.5946 -0.8381 27 1 -0.3634 -1.0232 -0.0958 28 1 -0.3633 0.4286 0.9341 29 1 2.4683 -0.2974 -1.5988 30 1 1.1910 -0.6288 -2.7953 31 1 3.9644 0.5225 -3.3556 32 1 3.3735 -1.0940 -3.8121 33 1 3.2512 0.4484 -5.7396 34 1 1.6182 -0.0389 -5.2261 35 1 2.4672 3.1017 -9.0614 36 1 0.1486 1.6041 -3.9739 37 1 0.8652 3.1346 -3.4068 38 1 0.4523 2.1596 1.2184 39 1 1.8460 1.5390 2.1353 40 1 1.8253 4.0184 2.1173 41 1 1.8546 4.0058 0.3379 42 1 3.9935 2.8152 2.1612 43 1 4.1302 4.3456 1.2622 44 1 5.2443 2.4951 0.0444 45 1 3.8510 3.1166 -0.8729 46 1 3.8425 0.6501 0.9243 47 1 3.8711 0.6375 -0.8554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:05 Heat of formation + Delta-G solvation = -81.485860 kcal Electronic energy + Delta-G solvation = -26691.894273 eV Core-core repulsion = 23260.581863 eV Total energy + Delta-G solvation = -3431.312410 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14792 -38.13912 -37.12873 -36.15889 -33.49036 -31.80271 -30.99861 -30.50680 -29.98592 -26.72979 -25.61060 -25.02970 -22.74725 -22.57636 -21.63240 -20.89857 -19.52187 -18.36385 -17.53655 -16.73225 -16.21663 -15.82533 -15.36323 -15.01930 -14.74215 -14.28451 -14.12889 -13.76785 -13.70528 -13.53667 -13.28220 -13.12373 -12.70137 -12.54019 -12.39660 -12.14176 -12.10002 -12.03326 -11.62906 -11.35499 -11.14541 -11.03211 -10.94014 -10.63807 -10.49864 -10.38954 -10.23493 -10.15572 -9.85462 -9.76619 -9.38899 -9.09506 -8.73507 -8.57215 -8.05384 -6.10688 -4.10633 2.77376 3.23412 3.31630 3.35492 3.37630 3.57228 4.37725 4.47463 4.62956 4.71048 5.01433 5.06734 5.16368 5.18913 5.26004 5.30820 5.36881 5.39984 5.44501 5.45271 5.54035 5.60899 5.68967 5.73690 5.79065 5.89995 5.98478 6.02369 6.08119 6.13410 6.18026 6.19091 6.19848 6.25795 6.42018 6.51022 6.57138 6.72479 6.73033 6.91161 6.94581 7.13255 7.45890 7.71754 7.85701 8.44840 8.50873 8.92347 9.51094 11.02353 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.005233 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.871379 B = 5348.916988 C = 5561.699935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.370 6.370 3 C 0.104 3.896 4 C 0.495 3.505 5 O -0.536 6.536 6 N -0.596 5.596 7 C 0.102 3.898 8 C -0.141 4.141 9 C -0.122 4.122 10 C 0.007 3.993 11 H 0.030 0.970 12 C -0.514 4.514 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.298 1.298 19 H -0.266 1.266 20 C 0.124 3.876 21 C -0.121 4.121 22 C -0.143 4.143 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.105 4.105 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.264 0.736 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -7.168 19.345 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.289 6.289 3 C 0.062 3.938 4 C 0.282 3.718 5 O -0.415 6.415 6 N -0.327 5.327 7 C -0.020 4.020 8 C -0.179 4.179 9 C -0.160 4.160 10 C -0.012 4.012 11 H 0.048 0.952 12 C -0.552 4.552 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.225 1.225 19 H -0.191 1.191 20 C 0.003 3.997 21 C -0.159 4.159 22 C -0.180 4.180 23 C -0.153 4.153 24 C -0.160 4.160 25 C -0.143 4.143 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.893 -6.684 19.172 20.392 hybrid contribution 0.723 -0.380 -0.303 0.871 sum 2.617 -7.063 18.869 20.317 Atomic orbital electron populations 1.22840 0.80902 1.02949 1.00644 1.87938 1.20095 1.26208 1.94612 1.21792 0.95593 0.83271 0.93155 1.21026 0.78175 0.87432 0.85202 1.90512 1.49391 1.16221 1.85330 1.48390 1.61527 1.14246 1.08544 1.22052 0.97473 0.82088 1.00421 1.22044 0.98320 1.00615 0.96924 1.21984 0.99996 0.99283 0.94692 1.19516 0.94991 0.92082 0.94622 0.95215 1.20912 1.02199 1.39818 0.92313 0.90669 1.24976 0.97979 0.94742 0.95299 1.69896 1.37180 1.45683 1.00929 0.86829 0.85120 0.78376 0.77798 1.20596 1.22529 1.19113 1.21889 0.97185 0.97791 0.82807 1.21860 1.00963 0.97002 0.96094 1.22036 0.94690 0.96414 1.04898 1.21510 0.96398 1.00041 0.97368 1.21550 1.00046 0.94762 0.99607 1.21597 0.90338 0.98599 1.03744 0.93504 0.89249 0.93581 0.88042 0.91948 0.92293 0.91795 0.93319 0.92026 0.92609 0.92029 0.89697 0.91509 0.91126 0.92554 0.86857 0.92528 0.91927 0.91222 0.91115 0.90227 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.99 101.05 1.01 1.26 16 2 O -0.37 -4.58 7.54 -35.23 -0.27 -4.84 16 3 C 0.10 1.38 0.45 -91.78 -0.04 1.34 16 4 C 0.49 8.27 3.98 -10.99 -0.04 8.22 16 5 O -0.54 -10.36 12.44 5.55 0.07 -10.29 16 6 N -0.60 -10.33 2.78 -172.51 -0.48 -10.81 16 7 C 0.10 1.53 4.89 -3.71 -0.02 1.51 16 8 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 9 C -0.12 -2.52 4.65 -26.69 -0.12 -2.64 16 10 C 0.01 0.17 1.85 -91.43 -0.17 0.00 16 11 H 0.03 0.74 7.21 -51.93 -0.37 0.36 16 12 C -0.51 -14.23 9.15 -34.44 -0.31 -14.55 16 13 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 15 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 16 Si 0.89 21.86 24.39 -169.99 -4.15 17.72 16 17 H -0.28 -6.63 6.86 56.52 0.39 -6.24 16 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 20 C 0.12 2.55 5.69 -3.49 -0.02 2.53 16 21 C -0.12 -1.47 4.28 -26.73 -0.11 -1.58 16 22 C -0.14 -1.80 5.63 -26.73 -0.15 -1.95 16 23 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 24 C -0.12 -1.50 5.70 -26.75 -0.15 -1.65 16 25 C -0.11 -1.26 4.81 -26.75 -0.13 -1.39 16 26 H 0.05 0.59 6.86 -51.93 -0.36 0.24 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.45 6.69 -51.93 -0.35 0.10 16 29 H 0.10 1.36 3.63 -51.93 -0.19 1.17 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.88 7.00 -51.93 -0.36 1.52 16 38 H 0.07 0.82 6.65 -51.93 -0.35 0.48 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 1.78 4.97 -51.94 -0.26 1.53 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.08 7.08 -51.93 -0.37 0.71 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.96 6.34 -51.93 -0.33 0.64 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -30.54 333.82 -7.48 -38.01 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.77 Total: 2.61 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.69 Total: -10.86 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.29 Total: -37.38 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.20 Total: -15.13 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.54 -7.48 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.473 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds