Wall clock time and date at job start Tue Mar 31 2020 08:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99854 * 2 1 4 4 C 1.50691 * 109.47188 * 298.99228 * 3 2 1 5 5 O 1.21283 * 120.00135 * 137.79255 * 4 3 2 6 6 N 1.34770 * 120.00401 * 317.79023 * 4 3 2 7 7 C 1.46932 * 120.62805 * 356.09769 * 6 4 3 8 8 C 1.53189 * 108.77664 * 233.58111 * 7 6 4 9 9 C 1.53040 * 109.31517 * 305.36745 * 8 7 6 10 10 C 1.53039 * 109.53566 * 61.36457 * 9 8 7 11 11 H 1.08997 * 109.49881 * 58.58806 * 10 9 8 12 12 C 1.50710 * 109.49518 * 178.68136 * 10 9 8 13 13 H 1.07996 * 119.99632 * 119.99695 * 12 10 9 14 14 C 1.37874 * 119.99911 * 300.00112 * 12 10 9 15 15 N 1.31515 * 119.99538 * 179.97438 * 14 12 10 16 16 Si 1.86798 * 120.00299 * 359.97438 * 14 12 10 17 17 H 1.48500 * 109.46912 * 90.00079 * 16 14 12 18 18 H 1.48496 * 109.47328 * 210.00099 * 16 14 12 19 19 H 1.48504 * 109.47127 * 330.00621 * 16 14 12 20 20 C 1.46926 * 120.63743 * 175.81885 * 6 4 3 21 21 C 1.52998 * 109.46967 * 58.99434 * 3 2 1 22 22 C 1.53006 * 109.47002 * 179.97438 * 21 3 2 23 23 C 1.53000 * 109.47370 * 299.99979 * 22 21 3 24 24 C 1.52998 * 109.47040 * 60.00045 * 23 22 21 25 25 C 1.53000 * 109.47034 * 178.99185 * 3 2 1 26 26 H 1.08995 * 109.47156 * 54.64857 * 1 2 3 27 27 H 1.09004 * 109.47231 * 174.65134 * 1 2 3 28 28 H 1.09003 * 109.46685 * 294.64593 * 1 2 3 29 29 H 1.08999 * 109.58423 * 353.37390 * 7 6 4 30 30 H 1.09004 * 109.58355 * 113.65563 * 7 6 4 31 31 H 1.09002 * 109.49685 * 65.31787 * 8 7 6 32 32 H 1.09001 * 109.50009 * 185.41311 * 8 7 6 33 33 H 1.09000 * 109.45988 * 181.38492 * 9 8 7 34 34 H 1.08992 * 109.45837 * 301.35573 * 9 8 7 35 35 H 0.96999 * 119.99693 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.58918 * 246.20579 * 20 6 4 37 37 H 1.09004 * 109.57898 * 6.62627 * 20 6 4 38 38 H 1.08998 * 109.47483 * 299.99462 * 21 3 2 39 39 H 1.08998 * 109.47366 * 59.99827 * 21 3 2 40 40 H 1.08999 * 109.46698 * 179.97438 * 22 21 3 41 41 H 1.08998 * 109.46847 * 59.99943 * 22 21 3 42 42 H 1.08998 * 109.47106 * 299.99806 * 23 22 21 43 43 H 1.08999 * 109.47049 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47483 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47366 * 59.99920 * 24 23 22 46 46 H 1.09007 * 109.47187 * 300.00354 * 25 3 2 47 47 H 1.08994 * 109.47163 * 60.00111 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5854 2.0444 -1.2427 5 8 1.2638 3.2118 -1.1739 6 7 1.5629 1.4082 -2.4305 7 6 2.0305 0.0200 -2.5452 8 6 3.0880 -0.0544 -3.6510 9 6 2.5090 0.5227 -4.9448 10 6 2.1383 1.9917 -4.7290 11 1 3.0236 2.5493 -4.4235 12 6 1.5983 2.5680 -6.0126 13 1 0.5952 2.9666 -6.0456 14 6 2.3850 2.5861 -7.1447 15 7 1.9136 3.0886 -8.2650 16 14 4.1204 1.8972 -7.0875 17 1 4.0912 0.4531 -7.4324 18 1 4.9732 2.6220 -8.0634 19 1 4.6762 2.0686 -5.7211 20 6 1.0647 2.0874 -3.6344 21 6 1.5388 2.0735 1.2364 22 6 2.1616 3.4711 1.2367 23 6 3.6865 3.3499 1.2624 24 6 4.1580 2.5819 0.0260 25 6 3.5352 1.1847 0.0254 26 1 -0.3633 0.5946 -0.8381 27 1 -0.3634 -1.0232 -0.0958 28 1 -0.3633 0.4286 0.9341 29 1 2.4683 -0.2974 -1.5988 30 1 1.1910 -0.6288 -2.7953 31 1 3.9644 0.5225 -3.3556 32 1 3.3735 -1.0940 -3.8121 33 1 3.2512 0.4484 -5.7396 34 1 1.6182 -0.0389 -5.2261 35 1 2.4672 3.1017 -9.0614 36 1 0.1486 1.6041 -3.9739 37 1 0.8652 3.1346 -3.4068 38 1 0.4523 2.1596 1.2184 39 1 1.8460 1.5390 2.1353 40 1 1.8253 4.0184 2.1173 41 1 1.8546 4.0058 0.3379 42 1 3.9935 2.8152 2.1612 43 1 4.1302 4.3456 1.2622 44 1 5.2443 2.4951 0.0444 45 1 3.8510 3.1166 -0.8729 46 1 3.8425 0.6501 0.9243 47 1 3.8711 0.6375 -0.8554 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:05 Heat of formation + Delta-G solvation = -100.940350 kcal Electronic energy + Delta-G solvation = -26692.737883 eV Core-core repulsion = 23260.581863 eV Total energy + Delta-G solvation = -3432.156020 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.31871 -39.48830 -38.37798 -37.24223 -35.32109 -33.55572 -32.34330 -31.73460 -31.04158 -27.60897 -27.33676 -26.61498 -23.89464 -23.66964 -23.15346 -22.03742 -21.03172 -19.69887 -18.91190 -18.52057 -17.29500 -17.11660 -16.85045 -16.24730 -16.05535 -15.61095 -15.30105 -15.23370 -15.01301 -14.78190 -14.71392 -14.29457 -14.18261 -14.04530 -13.86140 -13.26993 -13.13247 -13.03307 -12.94805 -12.84187 -12.55867 -12.42603 -12.11211 -11.99051 -11.91289 -11.88855 -11.54277 -11.42955 -11.38203 -11.20406 -11.02182 -10.72665 -10.69117 -9.99395 -9.52056 -8.34065 -6.39072 1.25898 1.33303 1.43557 1.49809 2.01242 2.28824 2.58167 3.00864 3.34855 3.65511 3.71497 4.00707 4.05471 4.08858 4.18671 4.19566 4.27006 4.30241 4.43390 4.44221 4.48676 4.51073 4.54046 4.61458 4.67282 4.72878 4.80673 4.86457 4.91611 4.93117 4.96082 5.03661 5.09448 5.13770 5.18055 5.24530 5.30255 5.32423 5.34918 5.40745 5.59972 5.65019 5.77488 5.93477 6.23210 6.52716 6.66847 7.17777 7.26756 8.82671 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.005233 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.871379 B = 5348.916988 C = 5561.699935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.365 6.365 3 C 0.112 3.888 4 C 0.489 3.511 5 O -0.570 6.570 6 N -0.599 5.599 7 C 0.103 3.897 8 C -0.135 4.135 9 C -0.121 4.121 10 C 0.012 3.988 11 H 0.012 0.988 12 C -0.522 4.522 13 H 0.033 0.967 14 C 0.015 3.985 15 N -0.948 5.948 16 Si 0.953 3.047 17 H -0.257 1.257 18 H -0.300 1.300 19 H -0.253 1.253 20 C 0.137 3.863 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.104 4.104 26 H 0.022 0.978 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.267 0.733 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.029 0.971 46 H 0.110 0.890 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -10.272 22.401 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.284 6.284 3 C 0.069 3.931 4 C 0.278 3.722 5 O -0.450 6.450 6 N -0.331 5.331 7 C -0.018 4.018 8 C -0.172 4.172 9 C -0.158 4.158 10 C -0.008 4.008 11 H 0.031 0.969 12 C -0.561 4.561 13 H 0.051 0.949 14 C -0.183 4.183 15 N -0.588 5.588 16 Si 0.780 3.220 17 H -0.183 1.183 18 H -0.228 1.228 19 H -0.178 1.178 20 C 0.014 3.986 21 C -0.157 4.157 22 C -0.182 4.182 23 C -0.149 4.149 24 C -0.160 4.160 25 C -0.142 4.142 26 H 0.041 0.959 27 H 0.134 0.866 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.048 0.952 46 H 0.129 0.871 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.899 -9.817 22.259 24.638 hybrid contribution -0.047 0.701 -1.249 1.433 sum 3.853 -9.116 21.010 23.224 Atomic orbital electron populations 1.22990 0.80112 1.04280 1.00307 1.87925 1.20857 1.25217 1.94415 1.21780 0.96673 0.83423 0.91185 1.21907 0.77060 0.87244 0.86007 1.90529 1.50521 1.18031 1.85941 1.48434 1.61820 1.15218 1.07614 1.22270 0.97715 0.80581 1.01236 1.22030 0.98238 1.02409 0.94568 1.21859 1.00019 0.96981 0.96951 1.19382 0.94625 0.93838 0.92954 0.96941 1.21216 1.00634 1.39534 0.94667 0.94893 1.25853 1.02586 0.95135 0.94693 1.70048 1.39151 1.47666 1.01898 0.85775 0.79383 0.78602 0.78238 1.18298 1.22810 1.17750 1.21410 0.96520 0.96726 0.83929 1.21883 1.00575 0.96712 0.96500 1.21962 0.96025 0.96653 1.03590 1.21506 0.95108 1.00401 0.97928 1.21555 1.01307 0.94858 0.98318 1.21663 0.88881 0.98444 1.05192 0.95918 0.86650 0.92338 0.85568 0.90628 0.92450 0.88058 0.94467 0.91919 0.92440 0.92191 0.92627 0.92221 0.88268 0.91189 0.90716 0.89722 0.91972 0.89271 0.95181 0.87135 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.99 113.37 1.13 1.49 16 2 O -0.37 -7.67 7.54 -148.98 -1.12 -8.80 16 3 C 0.11 2.68 0.45 -11.54 -0.01 2.68 16 4 C 0.49 16.25 3.98 87.66 0.35 16.60 16 5 O -0.57 -23.01 12.44 -3.04 -0.04 -23.05 16 6 N -0.60 -20.56 2.78 -818.08 -2.27 -22.83 16 7 C 0.10 2.79 4.89 86.36 0.42 3.21 16 8 C -0.13 -3.96 6.08 30.67 0.19 -3.77 16 9 C -0.12 -4.80 4.65 30.62 0.14 -4.66 16 10 C 0.01 0.55 1.85 -11.32 -0.02 0.53 16 11 H 0.01 0.63 7.21 -2.39 -0.02 0.61 16 12 C -0.52 -30.37 9.15 25.60 0.23 -30.14 16 13 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 14 C 0.01 0.86 5.45 84.65 0.46 1.32 16 15 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 16 Si 0.95 45.43 24.39 68.60 1.67 47.11 16 17 H -0.26 -11.34 6.86 99.48 0.68 -10.65 16 18 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 19 H -0.25 -11.43 6.53 99.48 0.65 -10.78 16 20 C 0.14 5.86 5.69 86.51 0.49 6.36 16 21 C -0.12 -2.57 4.28 30.60 0.13 -2.44 16 22 C -0.15 -3.45 5.63 30.60 0.17 -3.28 16 23 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 24 C -0.12 -2.76 5.70 30.58 0.17 -2.59 16 25 C -0.10 -2.13 4.81 30.58 0.15 -1.98 16 26 H 0.02 0.54 6.86 -2.39 -0.02 0.52 16 27 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 0.97 6.69 -2.39 -0.02 0.96 16 29 H 0.13 2.85 3.63 -2.39 -0.01 2.84 16 30 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.57 3.25 -2.39 -0.01 1.56 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.06 2.67 7.00 -2.39 -0.02 2.65 16 38 H 0.06 1.36 6.65 -2.39 -0.02 1.35 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 2.42 4.97 -2.62 -0.01 2.41 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.03 0.91 7.08 -2.39 -0.02 0.89 16 46 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.08 1.60 6.34 -2.39 -0.02 1.58 16 Total: -1.00 -71.07 333.82 3.61 -67.46 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.87 Total: 18.49 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.20 Total: -18.71 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.97 Total: -82.50 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.16 Total: -31.85 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.11 kcal Total: -71.07 3.61 -67.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.482 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds