Wall clock time and date at job start Tue Mar 31 2020 07:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47619 * 2 1 4 4 C 1.42898 * 114.00567 * 177.54227 * 3 2 1 5 5 C 1.50707 * 110.01038 * 58.98699 * 4 3 2 6 6 O 1.21279 * 119.99582 * 234.97789 * 5 4 3 7 7 N 1.34771 * 120.00126 * 54.98108 * 5 4 3 8 8 C 1.46923 * 120.63125 * 354.10276 * 7 5 4 9 9 C 1.52763 * 109.00685 * 233.58371 * 8 7 5 10 10 C 1.53040 * 109.38575 * 305.58501 * 9 8 7 11 11 C 1.53050 * 109.53372 * 61.24012 * 10 9 8 12 12 H 1.09000 * 109.49601 * 58.58721 * 11 10 9 13 13 C 1.50702 * 109.49518 * 178.68632 * 11 10 9 14 14 H 1.07997 * 119.99992 * 119.83969 * 13 11 10 15 15 C 1.37878 * 119.99659 * 299.83417 * 13 11 10 16 16 N 1.31513 * 120.00086 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99865 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46984 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47138 * 119.99980 * 17 15 13 20 20 H 1.48501 * 109.47494 * 240.00231 * 17 15 13 21 21 C 1.46930 * 120.62966 * 174.38155 * 7 5 4 22 22 C 1.54261 * 110.03308 * 297.59547 * 4 3 2 23 23 C 1.54962 * 104.16081 * 217.13044 * 22 4 3 24 24 C 1.54893 * 102.77291 * 37.89185 * 23 22 4 25 25 C 1.53877 * 110.03291 * 180.37651 * 4 3 2 26 26 H 1.08999 * 109.46864 * 299.99826 * 1 2 3 27 27 H 1.09005 * 109.46621 * 59.99584 * 1 2 3 28 28 H 1.09000 * 109.47025 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47342 * 120.00552 * 2 1 3 30 30 H 1.09008 * 109.47370 * 240.00434 * 2 1 3 31 31 H 1.09001 * 109.58986 * 353.41543 * 8 7 5 32 32 H 1.09003 * 109.58895 * 113.84649 * 8 7 5 33 33 H 1.09002 * 109.56570 * 185.55348 * 9 8 7 34 34 H 1.09001 * 109.38623 * 65.51689 * 9 8 7 35 35 H 1.08995 * 109.45997 * 301.22363 * 10 9 8 36 36 H 1.08992 * 109.45071 * 181.24853 * 10 9 8 37 37 H 0.97004 * 119.99838 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.58484 * 246.15389 * 21 7 5 39 39 H 1.09000 * 109.58624 * 6.58194 * 21 7 5 40 40 H 1.08996 * 110.48971 * 335.78178 * 22 4 3 41 41 H 1.09001 * 110.48637 * 98.42391 * 22 4 3 42 42 H 1.08996 * 110.72682 * 279.57845 * 23 22 4 43 43 H 1.09000 * 110.92392 * 156.29600 * 23 22 4 44 44 H 1.09002 * 110.48542 * 203.40510 * 24 23 22 45 45 H 1.08998 * 110.48857 * 80.76508 * 24 23 22 46 46 H 1.09005 * 110.02919 * 238.57652 * 25 4 3 47 47 H 1.08994 * 110.03148 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4298 1.4605 0.0560 5 6 4.0499 0.7568 -1.1236 6 8 4.8881 -0.1015 -0.9456 7 7 3.6731 1.0812 -2.3762 8 6 2.5699 2.0241 -2.6056 9 6 1.5440 1.3737 -3.5319 10 6 2.2414 0.8993 -4.8089 11 6 3.3042 -0.1434 -4.4544 12 1 2.8340 -0.9819 -3.9405 13 6 3.9681 -0.6336 -5.7153 14 1 5.0317 -0.5041 -5.8510 15 6 3.2177 -1.2475 -6.6956 16 7 1.9225 -1.4048 -6.5305 17 14 4.0407 -1.8558 -8.2583 18 1 5.4950 -1.5609 -8.1988 19 1 3.8381 -3.3213 -8.3863 20 1 3.4436 -1.1692 -9.4319 21 6 4.3537 0.4941 -3.5385 22 6 3.9570 0.8516 1.3716 23 6 5.1272 1.7826 1.7781 24 6 4.6034 3.1848 1.3799 25 6 3.8408 2.9433 0.0609 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 2.0969 2.2713 -1.6551 32 1 2.9552 2.9312 -3.0712 33 1 0.7714 2.0989 -3.7874 34 1 1.0899 0.5210 -3.0270 35 1 2.7157 1.7486 -5.3005 36 1 1.5065 0.4550 -5.4801 37 1 1.3946 -1.8370 -7.2201 38 1 4.8875 1.2738 -4.0818 39 1 5.0574 -0.2679 -3.2034 40 1 3.1792 0.8612 2.1351 41 1 4.3167 -0.1638 1.2048 42 1 6.0296 1.5344 1.2194 43 1 5.3121 1.7297 2.8510 44 1 5.4348 3.8713 1.2197 45 1 3.9299 3.5718 2.1446 46 1 4.4895 3.1538 -0.7895 47 1 2.9546 3.5765 0.0210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:19 Heat of formation + Delta-G solvation = -97.732655 kcal Electronic energy + Delta-G solvation = -26274.671279 eV Core-core repulsion = 22842.654356 eV Total energy + Delta-G solvation = -3432.016924 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74505 -37.98240 -36.79799 -35.91806 -33.46622 -31.54242 -31.03232 -30.21606 -28.78293 -27.89208 -25.06551 -24.66596 -22.85276 -21.72849 -21.53164 -20.68556 -19.36265 -18.48381 -17.42766 -16.43063 -16.17403 -15.65961 -15.16493 -14.84232 -14.69446 -14.51952 -13.98876 -13.54245 -13.36939 -13.28048 -12.96080 -12.75408 -12.69729 -12.27420 -12.03929 -11.93460 -11.66587 -11.51875 -11.41470 -11.22252 -10.99593 -10.98908 -10.89722 -10.79009 -10.68565 -10.62704 -10.26259 -9.98554 -9.85334 -9.75182 -9.42885 -8.96610 -8.69025 -8.38178 -7.87076 -6.01864 -4.08936 2.88035 3.28316 3.36302 3.39573 3.45869 3.70116 4.42252 4.44188 4.53640 4.76138 4.98779 5.13695 5.24918 5.27900 5.32898 5.37519 5.48598 5.52378 5.59820 5.62811 5.73411 5.76631 5.80669 5.84172 5.93195 5.98790 6.00299 6.06192 6.13068 6.20715 6.22157 6.27492 6.38830 6.42624 6.55365 6.68079 6.85520 6.98639 7.13089 7.22923 7.36650 7.69721 7.92313 8.03355 8.08694 8.37521 8.60589 8.94821 9.55937 11.03561 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.004668 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.767688 B = 5997.274314 C = 6490.940531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.364 6.364 4 C 0.102 3.898 5 C 0.492 3.508 6 O -0.546 6.546 7 N -0.591 5.591 8 C 0.094 3.906 9 C -0.131 4.131 10 C -0.112 4.112 11 C 0.042 3.958 12 H 0.027 0.973 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.113 3.887 22 C -0.138 4.138 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.110 4.110 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.094 0.906 37 H 0.259 0.741 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 8.835 15.061 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.283 6.283 4 C 0.059 3.941 5 C 0.278 3.722 6 O -0.425 6.425 7 N -0.322 5.322 8 C -0.029 4.029 9 C -0.169 4.169 10 C -0.150 4.150 11 C 0.023 3.977 12 H 0.046 0.954 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.008 4.008 22 C -0.176 4.176 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.148 4.148 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.101 8.472 15.025 17.284 hybrid contribution 0.418 -0.596 -1.110 1.328 sum -0.683 7.876 13.914 16.003 Atomic orbital electron populations 1.21721 0.93387 1.02396 1.02907 1.22550 0.95592 0.83562 1.00912 1.87910 1.19038 1.27120 1.94251 1.22406 0.81437 0.96861 0.93387 1.20978 0.83296 0.83131 0.84814 1.90643 1.34581 1.32096 1.85155 1.48284 1.34008 1.44168 1.05726 1.22046 0.87879 0.91276 1.01667 1.21872 0.97092 0.99676 0.98228 1.21632 1.00340 0.97975 0.95098 1.18947 0.91739 0.93606 0.93418 0.95448 1.21118 0.94471 1.37842 1.01753 0.92501 1.24931 0.94834 0.95643 0.98374 1.69889 1.05270 1.43354 1.34209 0.86536 0.79733 0.78503 0.83234 1.19750 1.21038 1.21033 1.22030 0.96617 0.97242 0.84862 1.22838 0.98408 1.01159 0.95190 1.22428 0.98181 0.94262 1.00954 1.22362 0.99509 0.97471 0.96571 1.22193 1.01010 0.92601 0.98970 0.92146 0.91505 0.91098 0.93115 0.92613 0.88129 0.92755 0.92627 0.92585 0.94710 0.88770 0.93063 0.92709 0.90497 0.90408 0.89537 0.90945 0.91257 0.91245 0.91202 0.90442 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.32 16 2 C 0.05 0.70 6.08 37.16 0.23 0.93 16 3 O -0.36 -5.15 7.28 -35.23 -0.26 -5.40 16 4 C 0.10 1.46 0.53 -90.65 -0.05 1.42 16 5 C 0.49 9.08 5.05 -10.98 -0.06 9.02 16 6 O -0.55 -11.78 14.84 5.56 0.08 -11.69 16 7 N -0.59 -11.24 2.98 -173.03 -0.52 -11.75 16 8 C 0.09 1.56 5.52 -3.93 -0.02 1.54 16 9 C -0.13 -2.42 6.06 -26.83 -0.16 -2.58 16 10 C -0.11 -2.56 4.96 -26.68 -0.13 -2.69 16 11 C 0.04 1.04 2.25 -91.65 -0.21 0.84 16 12 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 13 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.11 2.50 5.67 -3.71 -0.02 2.48 16 22 C -0.14 -1.80 4.64 -25.04 -0.12 -1.91 16 23 C -0.12 -1.35 6.91 -24.70 -0.17 -1.52 16 24 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 25 C -0.11 -1.32 5.04 -25.62 -0.13 -1.45 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.66 7.05 -51.93 -0.37 0.29 16 30 H 0.06 0.95 7.24 -51.92 -0.38 0.58 16 31 H 0.10 1.51 4.07 -51.93 -0.21 1.30 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 2.43 6.05 -51.93 -0.31 2.11 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.82 7.00 -51.93 -0.36 1.46 16 40 H 0.08 0.89 7.89 -51.93 -0.41 0.49 16 41 H 0.09 1.30 6.89 -51.93 -0.36 0.94 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.99 7.64 -51.93 -0.40 0.59 16 47 H 0.09 0.95 7.83 -51.93 -0.41 0.54 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -29.59 354.52 -9.00 -38.59 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.24 Total: 2.42 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.02 Total: -9.29 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.11 Total: -36.15 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.17 Total: -17.10 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.59 -9.00 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.143 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds