Wall clock time and date at job start Tue Mar 31 2020 07:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47619 * 2 1 4 4 C 1.42898 * 114.00567 * 177.54227 * 3 2 1 5 5 C 1.50707 * 110.01038 * 58.98699 * 4 3 2 6 6 O 1.21279 * 119.99582 * 234.97789 * 5 4 3 7 7 N 1.34771 * 120.00126 * 54.98108 * 5 4 3 8 8 C 1.46923 * 120.63125 * 354.10276 * 7 5 4 9 9 C 1.52763 * 109.00685 * 233.58371 * 8 7 5 10 10 C 1.53040 * 109.38575 * 305.58501 * 9 8 7 11 11 C 1.53050 * 109.53372 * 61.24012 * 10 9 8 12 12 H 1.09000 * 109.49601 * 58.58721 * 11 10 9 13 13 C 1.50702 * 109.49518 * 178.68632 * 11 10 9 14 14 H 1.07997 * 119.99992 * 119.83969 * 13 11 10 15 15 C 1.37878 * 119.99659 * 299.83417 * 13 11 10 16 16 N 1.31513 * 120.00086 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99865 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46984 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47138 * 119.99980 * 17 15 13 20 20 H 1.48501 * 109.47494 * 240.00231 * 17 15 13 21 21 C 1.46930 * 120.62966 * 174.38155 * 7 5 4 22 22 C 1.54261 * 110.03308 * 297.59547 * 4 3 2 23 23 C 1.54962 * 104.16081 * 217.13044 * 22 4 3 24 24 C 1.54893 * 102.77291 * 37.89185 * 23 22 4 25 25 C 1.53877 * 110.03291 * 180.37651 * 4 3 2 26 26 H 1.08999 * 109.46864 * 299.99826 * 1 2 3 27 27 H 1.09005 * 109.46621 * 59.99584 * 1 2 3 28 28 H 1.09000 * 109.47025 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47342 * 120.00552 * 2 1 3 30 30 H 1.09008 * 109.47370 * 240.00434 * 2 1 3 31 31 H 1.09001 * 109.58986 * 353.41543 * 8 7 5 32 32 H 1.09003 * 109.58895 * 113.84649 * 8 7 5 33 33 H 1.09002 * 109.56570 * 185.55348 * 9 8 7 34 34 H 1.09001 * 109.38623 * 65.51689 * 9 8 7 35 35 H 1.08995 * 109.45997 * 301.22363 * 10 9 8 36 36 H 1.08992 * 109.45071 * 181.24853 * 10 9 8 37 37 H 0.97004 * 119.99838 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.58484 * 246.15389 * 21 7 5 39 39 H 1.09000 * 109.58624 * 6.58194 * 21 7 5 40 40 H 1.08996 * 110.48971 * 335.78178 * 22 4 3 41 41 H 1.09001 * 110.48637 * 98.42391 * 22 4 3 42 42 H 1.08996 * 110.72682 * 279.57845 * 23 22 4 43 43 H 1.09000 * 110.92392 * 156.29600 * 23 22 4 44 44 H 1.09002 * 110.48542 * 203.40510 * 24 23 22 45 45 H 1.08998 * 110.48857 * 80.76508 * 24 23 22 46 46 H 1.09005 * 110.02919 * 238.57652 * 25 4 3 47 47 H 1.08994 * 110.03148 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4298 1.4605 0.0560 5 6 4.0499 0.7568 -1.1236 6 8 4.8881 -0.1015 -0.9456 7 7 3.6731 1.0812 -2.3762 8 6 2.5699 2.0241 -2.6056 9 6 1.5440 1.3737 -3.5319 10 6 2.2414 0.8993 -4.8089 11 6 3.3042 -0.1434 -4.4544 12 1 2.8340 -0.9819 -3.9405 13 6 3.9681 -0.6336 -5.7153 14 1 5.0317 -0.5041 -5.8510 15 6 3.2177 -1.2475 -6.6956 16 7 1.9225 -1.4048 -6.5305 17 14 4.0407 -1.8558 -8.2583 18 1 5.4950 -1.5609 -8.1988 19 1 3.8381 -3.3213 -8.3863 20 1 3.4436 -1.1692 -9.4319 21 6 4.3537 0.4941 -3.5385 22 6 3.9570 0.8516 1.3716 23 6 5.1272 1.7826 1.7781 24 6 4.6034 3.1848 1.3799 25 6 3.8408 2.9433 0.0609 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 2.0969 2.2713 -1.6551 32 1 2.9552 2.9312 -3.0712 33 1 0.7714 2.0989 -3.7874 34 1 1.0899 0.5210 -3.0270 35 1 2.7157 1.7486 -5.3005 36 1 1.5065 0.4550 -5.4801 37 1 1.3946 -1.8370 -7.2201 38 1 4.8875 1.2738 -4.0818 39 1 5.0574 -0.2679 -3.2034 40 1 3.1792 0.8612 2.1351 41 1 4.3167 -0.1638 1.2048 42 1 6.0296 1.5344 1.2194 43 1 5.3121 1.7297 2.8510 44 1 5.4348 3.8713 1.2197 45 1 3.9299 3.5718 2.1446 46 1 4.4895 3.1538 -0.7895 47 1 2.9546 3.5765 0.0210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:18 Heat of formation + Delta-G solvation = -114.263562 kcal Electronic energy + Delta-G solvation = -26275.388113 eV Core-core repulsion = 22842.654356 eV Total energy + Delta-G solvation = -3432.733758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07119 -39.40364 -38.34771 -36.99084 -35.37795 -33.18621 -32.26325 -31.94745 -29.74876 -29.04318 -27.03308 -26.21419 -23.90988 -23.42467 -22.97600 -21.57425 -20.95996 -19.88779 -18.90600 -18.29244 -17.47816 -17.05723 -16.64966 -16.39572 -15.97105 -15.76917 -15.38639 -15.07102 -14.94964 -14.66986 -14.39613 -14.18776 -13.89422 -13.76811 -13.58640 -13.26292 -12.90830 -12.83343 -12.67796 -12.61438 -12.54268 -12.39625 -12.11296 -12.00616 -11.94433 -11.88886 -11.81107 -11.60451 -11.47576 -11.30723 -11.14846 -10.85696 -10.48610 -10.16837 -9.53378 -8.13019 -6.28684 1.37908 1.39780 1.43294 1.51529 2.00497 2.41242 2.53649 3.13327 3.29913 3.53930 3.62513 4.03580 4.09461 4.18254 4.22119 4.25043 4.32628 4.41119 4.41861 4.45087 4.50903 4.55001 4.61326 4.73325 4.77934 4.80475 4.83390 4.90255 4.97936 5.00150 5.00264 5.06574 5.12860 5.16669 5.20142 5.22483 5.31608 5.43024 5.43628 5.54386 5.58530 5.89065 5.99126 6.10024 6.31020 6.51383 6.80324 7.10155 7.39614 8.90924 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.004668 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.767688 B = 5997.274314 C = 6490.940531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.357 6.357 4 C 0.104 3.896 5 C 0.486 3.514 6 O -0.586 6.586 7 N -0.595 5.595 8 C 0.098 3.902 9 C -0.122 4.122 10 C -0.104 4.104 11 C 0.045 3.955 12 H -0.018 1.018 13 C -0.538 4.538 14 H 0.052 0.948 15 C 0.018 3.982 16 N -0.913 5.913 17 Si 0.956 3.044 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.275 1.275 21 C 0.126 3.874 22 C -0.138 4.138 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.110 4.110 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.015 0.985 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 11.186 16.471 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.276 6.276 4 C 0.062 3.938 5 C 0.274 3.726 6 O -0.467 6.467 7 N -0.326 5.326 8 C -0.023 4.023 9 C -0.160 4.160 10 C -0.142 4.142 11 C 0.026 3.974 12 H 0.000 1.000 13 C -0.577 4.577 14 H 0.070 0.930 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.200 1.200 21 C 0.004 3.996 22 C -0.175 4.175 23 C -0.157 4.157 24 C -0.150 4.150 25 C -0.148 4.148 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.736 10.845 16.446 19.776 hybrid contribution 0.612 -1.414 -1.544 2.181 sum -1.124 9.431 14.902 17.671 Atomic orbital electron populations 1.21712 0.91235 1.03242 1.03619 1.22573 0.97281 0.83355 0.99418 1.87904 1.18728 1.26986 1.94011 1.22523 0.81311 0.98290 0.91686 1.21892 0.82686 0.82485 0.85543 1.90617 1.36470 1.33821 1.85766 1.48348 1.34534 1.44486 1.05206 1.22197 0.86636 0.90924 1.02518 1.21779 0.97960 1.00028 0.96243 1.21421 0.99033 0.97039 0.96707 1.18831 0.92774 0.93016 0.92807 0.99993 1.21448 0.94472 1.38721 1.03028 0.93018 1.25691 0.95402 0.95674 1.01363 1.70021 1.06380 1.43618 1.35145 0.85537 0.78884 0.77868 0.79551 1.19336 1.20829 1.20017 1.21606 0.95539 0.96787 0.85686 1.22854 0.99783 0.99982 0.94930 1.22438 0.96440 0.94678 1.02173 1.22371 1.00117 0.96702 0.95781 1.22281 1.01948 0.90531 1.00038 0.89911 0.92171 0.90312 0.92148 0.96671 0.85816 0.90687 0.89505 0.94078 0.94423 0.91885 0.92900 0.91895 0.93118 0.88229 0.92398 0.93145 0.88808 0.89811 0.88860 0.91388 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 10.28 71.98 0.74 -2.31 16 2 C 0.05 1.38 6.08 71.98 0.44 1.81 16 3 O -0.36 -9.39 7.28 -148.98 -1.08 -10.48 16 4 C 0.10 2.87 0.53 -10.81 -0.01 2.86 16 5 C 0.49 18.28 5.05 87.66 0.44 18.72 16 6 O -0.59 -26.56 14.84 -3.03 -0.04 -26.60 16 7 N -0.59 -22.98 2.98 -819.73 -2.44 -25.42 16 8 C 0.10 3.13 5.52 86.22 0.48 3.61 16 9 C -0.12 -4.45 6.06 30.53 0.19 -4.27 16 10 C -0.10 -4.84 4.96 30.62 0.15 -4.68 16 11 C 0.04 2.35 2.25 -11.46 -0.03 2.32 16 12 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 13 C -0.54 -30.50 8.56 25.60 0.22 -30.28 16 14 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 15 C 0.02 1.00 5.30 84.66 0.45 1.45 16 16 N -0.91 -52.91 11.32 21.45 0.24 -52.67 16 17 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 C 0.13 5.82 5.67 86.36 0.49 6.31 16 22 C -0.14 -3.40 4.64 31.69 0.15 -3.25 16 23 C -0.12 -2.41 6.91 31.91 0.22 -2.19 16 24 C -0.11 -1.82 6.83 31.67 0.22 -1.60 16 25 C -0.11 -2.32 5.04 31.32 0.16 -2.16 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.53 7.05 -2.39 -0.02 1.51 16 30 H 0.01 0.54 7.24 -2.38 -0.02 0.52 16 31 H 0.12 3.40 4.07 -2.39 -0.01 3.40 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 3.34 6.05 -2.39 -0.01 3.33 16 37 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.05 2.56 7.00 -2.39 -0.02 2.55 16 40 H 0.10 2.01 7.89 -2.39 -0.02 2.00 16 41 H 0.06 1.77 6.89 -2.39 -0.02 1.75 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.58 7.64 -2.38 -0.02 1.56 16 47 H 0.11 1.85 7.83 -2.39 -0.02 1.83 16 Total: -1.00 -67.95 354.52 3.93 -64.03 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.93 Total: 18.59 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 4.30 Total: -13.66 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -2.20 Total: -78.09 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.13 Total: -37.08 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.95 3.93 -64.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.237 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds