Wall clock time and date at job start Tue Mar 31 2020 08:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 113.99966 * 2 1 4 4 C 1.53001 * 109.46985 * 150.00370 * 3 2 1 5 5 C 1.53008 * 109.47027 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46853 * 300.00188 * 5 4 3 7 7 C 1.50702 * 109.46788 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00262 * 333.52748 * 7 6 5 9 9 N 1.34782 * 119.99782 * 153.53412 * 7 6 5 10 10 C 1.46994 * 120.61554 * 5.66445 * 9 7 6 11 11 C 1.53193 * 108.73437 * 126.38736 * 10 9 7 12 12 C 1.53047 * 109.34062 * 54.62391 * 11 10 9 13 13 C 1.53041 * 109.53488 * 298.61841 * 12 11 10 14 14 H 1.08998 * 109.49301 * 301.40873 * 13 12 11 15 15 C 1.50699 * 109.49310 * 181.31515 * 13 12 11 16 16 H 1.07997 * 119.99867 * 245.70558 * 15 13 12 17 17 C 1.37883 * 120.00304 * 65.71095 * 15 13 12 18 18 N 1.31516 * 119.99755 * 359.01073 * 17 15 13 19 19 Si 1.86795 * 120.00419 * 179.01554 * 17 15 13 20 20 H 1.48501 * 109.47167 * 94.98694 * 19 17 15 21 21 H 1.48495 * 109.47369 * 214.99210 * 19 17 15 22 22 H 1.48502 * 109.46998 * 334.99297 * 19 17 15 23 23 C 1.46930 * 120.62464 * 185.64207 * 9 7 6 24 24 C 1.52994 * 109.47662 * 59.99899 * 6 5 4 25 25 C 1.52999 * 109.46944 * 270.00198 * 3 2 1 26 26 H 1.08993 * 109.47389 * 59.99811 * 1 2 3 27 27 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47287 * 299.99913 * 1 2 3 29 29 H 1.08995 * 109.47138 * 30.00293 * 3 2 1 30 30 H 1.08995 * 109.47246 * 59.99989 * 4 3 2 31 31 H 1.08997 * 109.47083 * 299.99594 * 4 3 2 32 32 H 1.08997 * 109.46807 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46940 * 59.99729 * 5 4 3 34 34 H 1.09004 * 109.46973 * 299.99521 * 6 5 4 35 35 H 1.08996 * 109.62859 * 6.60220 * 10 9 7 36 36 H 1.08997 * 109.58113 * 246.15025 * 10 9 7 37 37 H 1.08994 * 109.49956 * 294.65505 * 11 10 9 38 38 H 1.09002 * 109.49882 * 174.58812 * 11 10 9 39 39 H 1.09005 * 109.45540 * 58.63291 * 12 11 10 40 40 H 1.08999 * 109.46222 * 178.59191 * 12 11 10 41 41 H 0.97000 * 119.99970 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.58181 * 113.84493 * 23 9 7 43 43 H 1.08999 * 109.70948 * 353.48934 * 23 9 7 44 44 H 1.09004 * 109.47235 * 59.99782 * 24 6 5 45 45 H 1.08997 * 109.47288 * 180.02562 * 24 6 5 46 46 H 1.09004 * 109.47277 * 299.99721 * 25 3 2 47 47 H 1.08997 * 109.47309 * 60.00431 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 0.7212 5 6 3.9809 2.6612 0.7217 6 6 4.1881 3.1277 -0.7206 7 6 4.8014 4.5043 -0.7200 8 8 4.6207 5.2483 0.2206 9 7 5.5506 4.9087 -1.7649 10 6 5.6770 4.0691 -2.9648 11 6 5.2981 4.9042 -4.1919 12 6 6.1489 6.1761 -4.2217 13 6 5.8702 7.0077 -2.9675 14 1 4.8100 7.2570 -2.9245 15 6 6.6842 8.2751 -3.0134 16 1 7.4662 8.4412 -2.2873 17 6 6.4305 9.2228 -3.9823 18 7 5.4912 9.0119 -4.8783 19 14 7.4209 10.8060 -4.0224 20 1 8.5557 10.6562 -4.9684 21 1 6.5500 11.9236 -4.4670 22 1 7.9444 11.0969 -2.6635 23 6 6.2557 6.1971 -1.7261 24 6 2.8395 3.1699 -1.4418 25 6 2.2175 1.7714 -1.4425 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.3449 1.9994 0.5139 30 1 4.0241 0.5694 0.2073 31 1 3.2111 0.9314 1.7488 32 1 4.9415 2.6311 1.2359 33 1 3.3155 3.3547 1.2359 34 1 4.8536 2.4341 -1.2347 35 1 5.0074 3.2128 -2.8847 36 1 6.7061 3.7231 -3.0618 37 1 4.2433 5.1733 -4.1372 38 1 5.4792 4.3242 -5.0968 39 1 7.2045 5.9062 -4.2513 40 1 5.8985 6.7598 -5.1075 41 1 5.3129 9.6784 -5.5602 42 1 7.3320 6.0246 -1.7221 43 1 5.9702 6.7456 -0.8284 44 1 2.1740 3.8635 -0.9276 45 1 2.9872 3.5018 -2.4694 46 1 2.8828 1.0775 -1.9564 47 1 1.2567 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597905491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:11 Heat of formation + Delta-G solvation = -111.107178 kcal Electronic energy + Delta-G solvation = -25037.249543 eV Core-core repulsion = 21604.652656 eV Total energy + Delta-G solvation = -3432.596886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28318 -38.81788 -36.97010 -36.02068 -33.47487 -31.45823 -31.00816 -30.67611 -29.71525 -26.80756 -25.12071 -24.77325 -22.85284 -22.62356 -21.69304 -20.39516 -19.56871 -18.18152 -16.95610 -16.79276 -16.18473 -16.03331 -15.37599 -15.16761 -14.77428 -14.48446 -13.93781 -13.83912 -13.65402 -13.36518 -13.19199 -12.75572 -12.68482 -12.53976 -12.32132 -12.17746 -11.94547 -11.92340 -11.36800 -11.23181 -11.11302 -10.98738 -10.84818 -10.78921 -10.64584 -10.48680 -10.28338 -9.99479 -9.76780 -9.62741 -9.47817 -9.18090 -8.82710 -8.39132 -7.88278 -6.03798 -4.09305 3.04077 3.28796 3.36154 3.39761 3.46492 3.59970 4.42307 4.51943 4.57205 4.70583 4.93562 4.98662 5.09727 5.12894 5.15574 5.21946 5.28011 5.29262 5.37453 5.39927 5.41237 5.61315 5.64082 5.64613 5.77760 5.83744 5.90126 5.99042 6.03869 6.10804 6.20495 6.29024 6.31145 6.39447 6.46466 6.65268 6.79603 6.98075 7.00089 7.14419 7.30390 7.67849 7.90320 8.01268 8.03297 8.36345 8.67257 8.95176 9.55487 11.03599 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.003268 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.382727 B = 8565.746600 C = 8846.589405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.087 3.913 4 C -0.113 4.113 5 C -0.098 4.098 6 C -0.108 4.108 7 C 0.513 3.487 8 O -0.551 6.551 9 N -0.603 5.603 10 C 0.107 3.893 11 C -0.135 4.135 12 C -0.108 4.108 13 C 0.040 3.960 14 H 0.033 0.967 15 C -0.514 4.514 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.116 3.884 24 C -0.107 4.107 25 C -0.136 4.136 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.086 0.914 41 H 0.260 0.740 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 -17.714 5.442 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.029 3.971 4 C -0.151 4.151 5 C -0.136 4.136 6 C -0.129 4.129 7 C 0.300 3.700 8 O -0.429 6.429 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.173 4.173 12 C -0.147 4.147 13 C 0.021 3.979 14 H 0.051 0.949 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.005 4.005 24 C -0.145 4.145 25 C -0.174 4.174 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.720 -17.384 5.784 19.515 hybrid contribution 0.316 1.120 -0.365 1.219 sum -6.404 -16.265 5.419 18.301 Atomic orbital electron populations 1.22767 0.81351 1.02489 0.99988 1.87894 1.19437 1.28209 1.95106 1.22225 0.95084 0.84102 0.95650 1.21590 0.95162 0.97553 1.00774 1.21337 1.01891 0.95427 0.94923 1.21374 0.97980 0.95087 0.98471 1.20479 0.78587 0.88574 0.82331 1.90651 1.60578 1.55947 1.35718 1.48334 1.48262 1.21328 1.15554 1.21794 1.00947 0.93202 0.85632 1.21999 1.01301 0.98558 0.95429 1.21594 0.96415 0.93358 1.03283 1.18966 0.97764 0.92425 0.88731 0.94909 1.21078 1.18153 1.02085 1.13968 0.92520 1.24945 0.95155 0.98207 0.95518 1.69917 1.31389 1.35030 1.16416 0.86578 0.79908 0.83210 0.78320 1.20767 1.21216 1.19811 1.21987 0.94439 0.81974 1.02087 1.21475 0.94958 0.96910 1.01201 1.22016 1.01498 0.96793 0.97083 0.94056 0.89846 0.94128 0.92008 0.91037 0.91106 0.91014 0.90552 0.89099 0.90839 0.92033 0.92349 0.92467 0.94495 0.89581 0.93013 0.92855 0.90296 0.91068 0.90625 0.90846 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.39 -4.09 10.35 -35.23 -0.36 -4.45 16 3 C 0.09 0.87 2.61 -26.73 -0.07 0.80 16 4 C -0.11 -1.13 5.57 -26.73 -0.15 -1.28 16 5 C -0.10 -1.16 4.75 -26.73 -0.13 -1.28 16 6 C -0.11 -1.38 1.66 -91.78 -0.15 -1.54 16 7 C 0.51 9.08 6.78 -10.98 -0.07 9.00 16 8 O -0.55 -11.78 15.54 5.56 0.09 -11.70 16 9 N -0.60 -11.00 2.97 -172.71 -0.51 -11.52 16 10 C 0.11 1.62 6.00 -3.67 -0.02 1.60 16 11 C -0.13 -2.33 6.08 -26.61 -0.16 -2.50 16 12 C -0.11 -2.39 5.01 -26.69 -0.13 -2.53 16 13 C 0.04 0.99 2.15 -91.65 -0.20 0.79 16 14 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.51 -13.92 8.49 -34.44 -0.29 -14.22 16 16 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 17 C 0.06 1.73 5.33 -17.82 -0.09 1.64 16 18 N -0.89 -25.07 11.71 55.43 0.65 -24.42 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.12 2.51 5.66 -3.71 -0.02 2.49 16 24 C -0.11 -1.26 4.96 -26.70 -0.13 -1.40 16 25 C -0.14 -1.34 5.54 -26.70 -0.15 -1.49 16 26 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 29 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 34 H 0.09 1.02 6.70 -51.93 -0.35 0.68 16 35 H 0.07 0.90 4.86 -51.93 -0.25 0.64 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 2.16 6.47 -51.93 -0.34 1.82 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.05 1.12 8.14 -51.92 -0.42 0.69 16 43 H 0.08 1.85 7.01 -51.93 -0.36 1.49 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.91 7.19 -51.93 -0.37 0.54 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -30.37 358.31 -8.79 -39.15 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.34 Total: -0.03 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.68 Total: -8.57 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.14 Total: -35.94 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.28 Total: -16.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.37 -8.79 -39.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.953 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds