Wall clock time and date at job start Tue Mar 31 2020 08:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 113.99966 * 2 1 4 4 C 1.53001 * 109.46985 * 150.00370 * 3 2 1 5 5 C 1.53008 * 109.47027 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46853 * 300.00188 * 5 4 3 7 7 C 1.50702 * 109.46788 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00262 * 333.52748 * 7 6 5 9 9 N 1.34782 * 119.99782 * 153.53412 * 7 6 5 10 10 C 1.46994 * 120.61554 * 5.66445 * 9 7 6 11 11 C 1.53193 * 108.73437 * 126.38736 * 10 9 7 12 12 C 1.53047 * 109.34062 * 54.62391 * 11 10 9 13 13 C 1.53041 * 109.53488 * 298.61841 * 12 11 10 14 14 H 1.08998 * 109.49301 * 301.40873 * 13 12 11 15 15 C 1.50699 * 109.49310 * 181.31515 * 13 12 11 16 16 H 1.07997 * 119.99867 * 245.70558 * 15 13 12 17 17 C 1.37883 * 120.00304 * 65.71095 * 15 13 12 18 18 N 1.31516 * 119.99755 * 359.01073 * 17 15 13 19 19 Si 1.86795 * 120.00419 * 179.01554 * 17 15 13 20 20 H 1.48501 * 109.47167 * 94.98694 * 19 17 15 21 21 H 1.48495 * 109.47369 * 214.99210 * 19 17 15 22 22 H 1.48502 * 109.46998 * 334.99297 * 19 17 15 23 23 C 1.46930 * 120.62464 * 185.64207 * 9 7 6 24 24 C 1.52994 * 109.47662 * 59.99899 * 6 5 4 25 25 C 1.52999 * 109.46944 * 270.00198 * 3 2 1 26 26 H 1.08993 * 109.47389 * 59.99811 * 1 2 3 27 27 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47287 * 299.99913 * 1 2 3 29 29 H 1.08995 * 109.47138 * 30.00293 * 3 2 1 30 30 H 1.08995 * 109.47246 * 59.99989 * 4 3 2 31 31 H 1.08997 * 109.47083 * 299.99594 * 4 3 2 32 32 H 1.08997 * 109.46807 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46940 * 59.99729 * 5 4 3 34 34 H 1.09004 * 109.46973 * 299.99521 * 6 5 4 35 35 H 1.08996 * 109.62859 * 6.60220 * 10 9 7 36 36 H 1.08997 * 109.58113 * 246.15025 * 10 9 7 37 37 H 1.08994 * 109.49956 * 294.65505 * 11 10 9 38 38 H 1.09002 * 109.49882 * 174.58812 * 11 10 9 39 39 H 1.09005 * 109.45540 * 58.63291 * 12 11 10 40 40 H 1.08999 * 109.46222 * 178.59191 * 12 11 10 41 41 H 0.97000 * 119.99970 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.58181 * 113.84493 * 23 9 7 43 43 H 1.08999 * 109.70948 * 353.48934 * 23 9 7 44 44 H 1.09004 * 109.47235 * 59.99782 * 24 6 5 45 45 H 1.08997 * 109.47288 * 180.02562 * 24 6 5 46 46 H 1.09004 * 109.47277 * 299.99721 * 25 3 2 47 47 H 1.08997 * 109.47309 * 60.00431 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 0.7212 5 6 3.9809 2.6612 0.7217 6 6 4.1881 3.1277 -0.7206 7 6 4.8014 4.5043 -0.7200 8 8 4.6207 5.2483 0.2206 9 7 5.5506 4.9087 -1.7649 10 6 5.6770 4.0691 -2.9648 11 6 5.2981 4.9042 -4.1919 12 6 6.1489 6.1761 -4.2217 13 6 5.8702 7.0077 -2.9675 14 1 4.8100 7.2570 -2.9245 15 6 6.6842 8.2751 -3.0134 16 1 7.4662 8.4412 -2.2873 17 6 6.4305 9.2228 -3.9823 18 7 5.4912 9.0119 -4.8783 19 14 7.4209 10.8060 -4.0224 20 1 8.5557 10.6562 -4.9684 21 1 6.5500 11.9236 -4.4670 22 1 7.9444 11.0969 -2.6635 23 6 6.2557 6.1971 -1.7261 24 6 2.8395 3.1699 -1.4418 25 6 2.2175 1.7714 -1.4425 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.3449 1.9994 0.5139 30 1 4.0241 0.5694 0.2073 31 1 3.2111 0.9314 1.7488 32 1 4.9415 2.6311 1.2359 33 1 3.3155 3.3547 1.2359 34 1 4.8536 2.4341 -1.2347 35 1 5.0074 3.2128 -2.8847 36 1 6.7061 3.7231 -3.0618 37 1 4.2433 5.1733 -4.1372 38 1 5.4792 4.3242 -5.0968 39 1 7.2045 5.9062 -4.2513 40 1 5.8985 6.7598 -5.1075 41 1 5.3129 9.6784 -5.5602 42 1 7.3320 6.0246 -1.7221 43 1 5.9702 6.7456 -0.8284 44 1 2.1740 3.8635 -0.9276 45 1 2.9872 3.5018 -2.4694 46 1 2.8828 1.0775 -1.9564 47 1 1.2567 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597905491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:10 Heat of formation + Delta-G solvation = -128.800129 kcal Electronic energy + Delta-G solvation = -25038.016766 eV Core-core repulsion = 21604.652656 eV Total energy + Delta-G solvation = -3433.364110 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55035 -39.81175 -38.43473 -37.05936 -35.33663 -33.14012 -32.25188 -31.75813 -30.98170 -27.57490 -26.98053 -26.20014 -23.84084 -23.68450 -23.26073 -21.59752 -20.88449 -19.62390 -18.58587 -17.93630 -17.58740 -17.04768 -16.67185 -16.36540 -16.06078 -15.88025 -15.15414 -15.12983 -14.82493 -14.79930 -14.44448 -14.17547 -14.07220 -13.78904 -13.62225 -13.27110 -13.05406 -12.97944 -12.86746 -12.73785 -12.57948 -12.25847 -12.12193 -11.97610 -11.87059 -11.82982 -11.59385 -11.51854 -11.32858 -11.23893 -10.88427 -10.56132 -10.42408 -10.36506 -9.46698 -8.13693 -6.26779 1.39003 1.40646 1.51028 1.65092 2.12456 2.42902 2.80788 3.15227 3.52393 3.66712 3.71761 4.04431 4.08785 4.16210 4.23428 4.26417 4.33830 4.36915 4.42730 4.50611 4.53677 4.55937 4.58630 4.63219 4.73636 4.79475 4.80816 4.86990 4.92211 4.97072 5.00112 5.06348 5.12896 5.17472 5.18038 5.27518 5.34924 5.39388 5.48213 5.57359 5.60133 5.92272 6.08225 6.30904 6.32494 6.59193 6.83748 7.24795 7.41171 8.92333 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.003268 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.382727 B = 8565.746600 C = 8846.589405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.085 3.915 4 C -0.105 4.105 5 C -0.094 4.094 6 C -0.097 4.097 7 C 0.506 3.494 8 O -0.596 6.596 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.127 4.127 12 C -0.102 4.102 13 C 0.042 3.958 14 H -0.013 1.013 15 C -0.537 4.537 16 H 0.052 0.948 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 0.954 3.046 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.129 3.871 24 C -0.104 4.104 25 C -0.127 4.127 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.261 0.739 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 -20.286 4.916 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.028 3.972 4 C -0.143 4.143 5 C -0.132 4.132 6 C -0.118 4.118 7 C 0.296 3.704 8 O -0.477 6.477 9 N -0.339 5.339 10 C -0.014 4.014 11 C -0.165 4.165 12 C -0.140 4.140 13 C 0.023 3.977 14 H 0.005 0.995 15 C -0.576 4.576 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.780 3.220 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.006 3.994 24 C -0.142 4.142 25 C -0.165 4.165 26 H 0.065 0.935 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.424 -19.988 5.245 21.640 hybrid contribution 0.172 1.955 -0.174 1.970 sum -6.252 -18.033 5.071 19.748 Atomic orbital electron populations 1.22948 0.80063 1.03692 1.00525 1.87863 1.20898 1.28119 1.95197 1.22211 0.95103 0.84160 0.95746 1.21510 0.95219 0.96081 1.01452 1.21284 1.01601 0.96291 0.93990 1.21419 0.98616 0.91980 0.99778 1.21434 0.77614 0.90100 0.81246 1.90628 1.61950 1.57718 1.37447 1.48421 1.47997 1.20347 1.17089 1.22041 1.03344 0.93130 0.82842 1.21910 0.99327 0.96916 0.98357 1.21391 0.97577 0.94933 1.00105 1.18858 0.94493 0.92863 0.91508 0.99488 1.21454 1.18470 1.03722 1.13927 0.92960 1.25704 0.96178 1.01277 0.95189 1.70044 1.32549 1.35953 1.16861 0.85598 0.78680 0.79312 0.78414 1.19663 1.20989 1.19591 1.21537 0.95134 0.83486 0.99249 1.21444 0.94038 0.98065 1.00641 1.21946 1.02033 0.95302 0.97202 0.93472 0.88382 0.93681 0.92374 0.89877 0.90509 0.91183 0.92507 0.86194 0.86871 0.89822 0.93767 0.89038 0.94035 0.93010 0.92977 0.91984 0.93178 0.92823 0.90607 0.89581 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -7.38 10.35 -148.98 -1.54 -8.92 16 3 C 0.09 1.51 2.61 30.59 0.08 1.59 16 4 C -0.11 -1.82 5.57 30.60 0.17 -1.65 16 5 C -0.09 -2.08 4.75 30.60 0.15 -1.94 16 6 C -0.10 -2.29 1.66 -11.54 -0.02 -2.31 16 7 C 0.51 17.75 6.78 87.66 0.59 18.34 16 8 O -0.60 -26.35 15.54 -3.04 -0.05 -26.40 16 9 N -0.61 -21.76 2.97 -818.72 -2.43 -24.19 16 10 C 0.11 2.93 6.00 86.35 0.52 3.45 16 11 C -0.13 -4.18 6.08 30.67 0.19 -3.99 16 12 C -0.10 -4.52 5.01 30.62 0.15 -4.37 16 13 C 0.04 2.14 2.15 -11.46 -0.02 2.11 16 14 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 15 C -0.54 -30.05 8.49 25.60 0.22 -29.83 16 16 H 0.05 2.89 7.75 -2.91 -0.02 2.86 16 17 C 0.02 0.87 5.33 84.66 0.45 1.32 16 18 N -0.92 -53.08 11.71 21.45 0.25 -52.82 16 19 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C 0.13 5.71 5.66 86.36 0.49 6.19 16 24 C -0.10 -2.24 4.96 30.61 0.15 -2.09 16 25 C -0.13 -2.12 5.54 30.61 0.17 -1.95 16 26 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 0.54 8.09 -2.38 -0.02 0.52 16 29 H 0.06 1.06 7.79 -2.39 -0.02 1.04 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.49 7.86 -2.38 -0.02 1.47 16 34 H 0.12 2.17 6.70 -2.38 -0.02 2.16 16 35 H 0.11 2.22 4.86 -2.39 -0.01 2.21 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.05 2.65 6.47 -2.39 -0.02 2.64 16 41 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 43 H 0.05 2.48 7.01 -2.39 -0.02 2.46 16 44 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.08 1.65 7.19 -2.39 -0.02 1.63 16 46 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.07 1.15 7.87 -2.39 -0.02 1.14 16 Total: -1.00 -69.30 358.31 3.69 -65.62 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.92 Total: 14.23 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 4.51 Total: -13.58 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -2.18 Total: -77.01 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.59 Total: -35.32 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.30 3.69 -65.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.184 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds