Wall clock time and date at job start Tue Mar 31 2020 08:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 C 1.53000 * 109.46914 * 176.44182 * 3 2 1 5 5 C 1.53006 * 109.47192 * 174.90799 * 4 3 2 6 6 C 1.50697 * 112.90647 * 52.76917 * 5 4 3 7 7 O 1.21278 * 120.00668 * 245.05965 * 6 5 4 8 8 N 1.34780 * 119.99731 * 65.06497 * 6 5 4 9 9 C 1.46931 * 120.63143 * 5.18642 * 8 6 5 10 10 C 1.53184 * 108.77661 * 126.36943 * 9 8 6 11 11 C 1.53045 * 109.31284 * 54.63667 * 10 9 8 12 12 C 1.53042 * 109.53498 * 298.63201 * 11 10 9 13 13 H 1.09001 * 109.50095 * 301.41387 * 12 11 10 14 14 C 1.50704 * 109.49548 * 181.34672 * 12 11 10 15 15 H 1.07995 * 120.00497 * 239.99840 * 14 12 11 16 16 C 1.37878 * 119.99494 * 60.00689 * 14 12 11 17 17 N 1.31516 * 120.00572 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99718 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47503 * 89.99404 * 18 16 14 20 20 H 1.48497 * 109.46959 * 209.99731 * 18 16 14 21 21 H 1.48507 * 109.47163 * 329.99303 * 18 16 14 22 22 C 1.46924 * 120.62928 * 184.90799 * 8 6 5 23 23 C 1.53780 * 113.61608 * 184.02740 * 5 4 3 24 24 C 1.53780 * 87.17254 * 89.15710 * 23 5 4 25 25 C 1.53776 * 87.08475 * 25.38896 * 24 23 5 26 26 H 1.08994 * 109.47185 * 303.65445 * 1 2 3 27 27 H 1.09000 * 109.46836 * 63.65449 * 1 2 3 28 28 H 1.09006 * 109.47355 * 183.64978 * 1 2 3 29 29 H 1.08996 * 109.47355 * 56.43713 * 3 2 1 30 30 H 1.08998 * 109.47082 * 296.43644 * 3 2 1 31 31 H 1.09002 * 109.47275 * 54.90694 * 4 3 2 32 32 H 1.09000 * 109.47300 * 294.90159 * 4 3 2 33 33 H 1.09001 * 109.58591 * 246.16124 * 9 8 6 34 34 H 1.09004 * 109.58412 * 6.57899 * 9 8 6 35 35 H 1.09004 * 109.49608 * 174.58490 * 10 9 8 36 36 H 1.08998 * 109.49995 * 294.65407 * 10 9 8 37 37 H 1.09003 * 109.46047 * 58.65439 * 11 10 9 38 38 H 1.09006 * 109.45793 * 178.61346 * 11 10 9 39 39 H 0.97000 * 120.00061 * 180.02562 * 17 16 14 40 40 H 1.08991 * 109.58934 * 353.41362 * 22 8 6 41 41 H 1.08999 * 109.58774 * 113.84707 * 22 8 6 42 42 H 1.09000 * 113.61375 * 334.56768 * 23 5 4 43 43 H 1.08992 * 113.61367 * 203.74869 * 23 5 4 44 44 H 1.08996 * 113.61389 * 139.94443 * 24 23 5 45 45 H 1.09008 * 113.61308 * 270.84043 * 24 23 5 46 46 H 1.09004 * 113.61628 * 89.11478 * 25 24 23 47 47 H 1.08996 * 113.61775 * 219.93638 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5329 1.1857 0.0895 5 6 4.1621 2.5745 -0.0381 6 6 3.5843 3.5717 0.9327 7 8 2.9595 4.5265 0.5217 8 7 3.7619 3.4027 2.2581 9 6 4.6103 2.3164 2.7671 10 6 5.6603 2.9117 3.7104 11 6 4.9584 3.7245 4.8007 12 6 4.1780 4.8743 4.1595 13 1 4.8613 5.5054 3.5912 14 6 3.5142 5.6937 5.2361 15 1 2.4394 5.7984 5.2497 16 6 4.2792 6.3097 6.2037 17 7 5.5880 6.1820 6.1875 18 14 3.4563 7.3248 7.5387 19 1 3.1378 6.4531 8.6980 20 1 4.3736 8.4093 7.9720 21 1 2.2034 7.9191 7.0073 22 6 3.1157 4.3047 3.2210 23 6 5.6996 2.5547 -0.0590 24 6 5.6011 2.4027 -1.5861 25 6 4.2291 3.0903 -1.4872 26 1 -0.3633 0.5695 0.8554 27 1 -0.3633 0.4561 -0.9209 28 1 -0.3634 -1.0256 0.0654 29 1 1.6390 1.8684 0.8563 30 1 1.7400 1.8234 -0.9202 31 1 3.8952 0.5472 -0.7162 32 1 3.8073 0.7495 1.0500 33 1 3.9969 1.5975 3.3101 34 1 5.1074 1.8199 1.9337 35 1 6.2348 2.1070 4.1695 36 1 6.3299 3.5608 3.1463 37 1 4.2709 3.0799 5.3484 38 1 5.7019 4.1289 5.4876 39 1 6.1261 6.6151 6.8686 40 1 2.6270 5.1197 2.6872 41 1 2.3779 3.7513 3.8019 42 1 6.1319 1.6869 0.4391 43 1 6.1527 3.4940 0.2579 44 1 6.3432 2.9854 -2.1317 45 1 5.5470 1.3662 -1.9192 46 1 4.2788 4.1767 -1.5607 47 1 3.4747 2.6558 -2.1430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:05 Heat of formation + Delta-G solvation = -73.491964 kcal Electronic energy + Delta-G solvation = -25638.944742 eV Core-core repulsion = 22207.978973 eV Total energy + Delta-G solvation = -3430.965768 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85007 -38.17175 -37.63536 -36.53446 -33.50683 -31.76010 -31.17908 -30.22680 -27.15480 -26.04252 -25.59925 -24.95056 -24.10604 -22.61578 -21.66998 -20.41927 -19.01380 -17.97481 -16.84741 -16.51071 -16.28422 -16.09790 -15.53693 -15.11742 -14.92977 -14.72618 -14.24971 -13.70499 -13.60182 -13.29655 -13.11157 -12.76050 -12.53499 -12.39698 -12.28052 -12.00625 -11.95098 -11.70868 -11.41619 -11.21036 -11.06751 -10.98140 -10.81481 -10.71809 -10.52526 -10.33601 -10.20016 -9.94614 -9.78032 -9.72069 -9.43104 -9.11854 -8.79694 -8.38778 -7.87150 -6.02296 -4.09457 3.03692 3.28998 3.35911 3.39243 3.49868 3.61777 4.37573 4.42074 4.54553 4.69087 4.75869 4.90223 5.08750 5.11924 5.24790 5.26690 5.32637 5.35135 5.39092 5.49708 5.55110 5.63254 5.67206 5.75683 5.78877 5.82830 5.86665 5.89914 6.02342 6.14049 6.16298 6.33210 6.36718 6.43584 6.49729 6.66136 6.82392 7.00020 7.03002 7.17720 7.34101 7.68710 7.92203 8.04374 8.07798 8.37341 8.67022 8.94237 9.55455 11.03121 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.004317 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.482726 B = 6484.682295 C = 7086.985502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.061 3.939 4 C -0.090 4.090 5 C -0.105 4.105 6 C 0.523 3.477 7 O -0.551 6.551 8 N -0.598 5.598 9 C 0.102 3.898 10 C -0.134 4.134 11 C -0.112 4.112 12 C 0.040 3.960 13 H 0.028 0.972 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.116 3.884 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.112 4.112 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 -12.777 -12.674 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.015 4.015 4 C -0.128 4.128 5 C -0.108 4.108 6 C 0.310 3.690 7 O -0.429 6.429 8 N -0.329 5.329 9 C -0.021 4.021 10 C -0.172 4.172 11 C -0.150 4.150 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.552 4.552 15 H 0.074 0.926 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.005 4.005 23 C -0.160 4.160 24 C -0.178 4.178 25 C -0.149 4.149 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.591 -12.370 -12.769 17.849 hybrid contribution -0.591 0.793 0.984 1.395 sum -2.182 -11.577 -11.785 16.664 Atomic orbital electron populations 1.22724 0.81026 1.02512 1.00166 1.87811 1.19748 1.28153 1.95510 1.22514 0.93772 0.84357 1.00874 1.21309 0.93296 0.94135 1.04043 1.22070 0.97228 0.94980 0.96540 1.20222 0.80109 0.85942 0.82721 1.90648 1.42619 1.31705 1.77949 1.48248 1.47910 1.31341 1.05444 1.21965 0.92885 0.89162 0.98067 1.21998 0.97309 0.99610 0.98331 1.21626 1.00306 0.96098 0.96971 1.18878 0.92803 0.93160 0.93018 0.95351 1.21075 0.93306 1.30233 1.10631 0.92557 1.24928 0.94802 0.96240 0.97783 1.69872 1.04111 1.43952 1.34815 0.86589 0.79383 0.79983 0.82029 1.20689 1.21234 1.19880 1.21897 0.96499 0.92209 0.89864 1.23006 0.92918 1.03169 0.96870 1.22856 0.97738 1.01015 0.96234 1.22860 0.97101 1.01602 0.93387 0.93914 0.94180 0.89720 0.93034 0.92958 0.89942 0.90021 0.92210 0.90250 0.92529 0.92414 0.94658 0.88665 0.92993 0.90435 0.92860 0.90371 0.89229 0.91066 0.89943 0.88976 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.02 10.70 -35.23 -0.38 -5.39 16 3 C 0.06 0.80 5.49 37.16 0.20 1.00 16 4 C -0.09 -1.06 4.64 -26.73 -0.12 -1.19 16 5 C -0.10 -1.38 0.32 -154.75 -0.05 -1.43 16 6 C 0.52 9.34 5.46 -10.98 -0.06 9.28 16 7 O -0.55 -11.83 15.56 5.56 0.09 -11.74 16 8 N -0.60 -11.01 2.98 -173.03 -0.52 -11.53 16 9 C 0.10 1.59 5.05 -3.71 -0.02 1.57 16 10 C -0.13 -2.37 6.08 -26.61 -0.16 -2.54 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 12 C 0.04 1.00 2.24 -91.87 -0.21 0.79 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 14 C -0.51 -13.94 8.57 -34.44 -0.29 -14.24 16 15 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.93 11.31 55.43 0.63 -24.30 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.12 2.53 5.64 -3.93 -0.02 2.51 16 23 C -0.12 -1.40 5.76 -25.92 -0.15 -1.55 16 24 C -0.14 -1.37 7.73 -25.92 -0.20 -1.57 16 25 C -0.11 -1.35 6.77 -25.83 -0.17 -1.52 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.76 7.43 -51.93 -0.39 0.38 16 30 H 0.05 0.67 7.61 -51.93 -0.39 0.27 16 31 H 0.08 0.84 7.33 -51.93 -0.38 0.46 16 32 H 0.08 0.95 6.11 -51.93 -0.32 0.64 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.02 3.23 -51.93 -0.17 0.85 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.08 1.82 7.00 -51.93 -0.36 1.46 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 0.77 7.03 -51.93 -0.37 0.41 16 43 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.68 7.63 -51.92 -0.40 0.28 16 46 H 0.09 1.28 7.70 -51.93 -0.40 0.88 16 47 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -30.24 356.76 -8.27 -38.50 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.07 Total: 1.41 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.37 Total: -8.44 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.11 Total: -35.83 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.29 Total: -17.13 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.24 -8.27 -38.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.987 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds