Wall clock time and date at job start Tue Mar 31 2020 08:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 C 1.53000 * 109.46914 * 176.44182 * 3 2 1 5 5 C 1.53006 * 109.47192 * 174.90799 * 4 3 2 6 6 C 1.50697 * 112.90647 * 52.76917 * 5 4 3 7 7 O 1.21278 * 120.00668 * 245.05965 * 6 5 4 8 8 N 1.34780 * 119.99731 * 65.06497 * 6 5 4 9 9 C 1.46931 * 120.63143 * 5.18642 * 8 6 5 10 10 C 1.53184 * 108.77661 * 126.36943 * 9 8 6 11 11 C 1.53045 * 109.31284 * 54.63667 * 10 9 8 12 12 C 1.53042 * 109.53498 * 298.63201 * 11 10 9 13 13 H 1.09001 * 109.50095 * 301.41387 * 12 11 10 14 14 C 1.50704 * 109.49548 * 181.34672 * 12 11 10 15 15 H 1.07995 * 120.00497 * 239.99840 * 14 12 11 16 16 C 1.37878 * 119.99494 * 60.00689 * 14 12 11 17 17 N 1.31516 * 120.00572 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99718 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47503 * 89.99404 * 18 16 14 20 20 H 1.48497 * 109.46959 * 209.99731 * 18 16 14 21 21 H 1.48507 * 109.47163 * 329.99303 * 18 16 14 22 22 C 1.46924 * 120.62928 * 184.90799 * 8 6 5 23 23 C 1.53780 * 113.61608 * 184.02740 * 5 4 3 24 24 C 1.53780 * 87.17254 * 89.15710 * 23 5 4 25 25 C 1.53776 * 87.08475 * 25.38896 * 24 23 5 26 26 H 1.08994 * 109.47185 * 303.65445 * 1 2 3 27 27 H 1.09000 * 109.46836 * 63.65449 * 1 2 3 28 28 H 1.09006 * 109.47355 * 183.64978 * 1 2 3 29 29 H 1.08996 * 109.47355 * 56.43713 * 3 2 1 30 30 H 1.08998 * 109.47082 * 296.43644 * 3 2 1 31 31 H 1.09002 * 109.47275 * 54.90694 * 4 3 2 32 32 H 1.09000 * 109.47300 * 294.90159 * 4 3 2 33 33 H 1.09001 * 109.58591 * 246.16124 * 9 8 6 34 34 H 1.09004 * 109.58412 * 6.57899 * 9 8 6 35 35 H 1.09004 * 109.49608 * 174.58490 * 10 9 8 36 36 H 1.08998 * 109.49995 * 294.65407 * 10 9 8 37 37 H 1.09003 * 109.46047 * 58.65439 * 11 10 9 38 38 H 1.09006 * 109.45793 * 178.61346 * 11 10 9 39 39 H 0.97000 * 120.00061 * 180.02562 * 17 16 14 40 40 H 1.08991 * 109.58934 * 353.41362 * 22 8 6 41 41 H 1.08999 * 109.58774 * 113.84707 * 22 8 6 42 42 H 1.09000 * 113.61375 * 334.56768 * 23 5 4 43 43 H 1.08992 * 113.61367 * 203.74869 * 23 5 4 44 44 H 1.08996 * 113.61389 * 139.94443 * 24 23 5 45 45 H 1.09008 * 113.61308 * 270.84043 * 24 23 5 46 46 H 1.09004 * 113.61628 * 89.11478 * 25 24 23 47 47 H 1.08996 * 113.61775 * 219.93638 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5329 1.1857 0.0895 5 6 4.1621 2.5745 -0.0381 6 6 3.5843 3.5717 0.9327 7 8 2.9595 4.5265 0.5217 8 7 3.7619 3.4027 2.2581 9 6 4.6103 2.3164 2.7671 10 6 5.6603 2.9117 3.7104 11 6 4.9584 3.7245 4.8007 12 6 4.1780 4.8743 4.1595 13 1 4.8613 5.5054 3.5912 14 6 3.5142 5.6937 5.2361 15 1 2.4394 5.7984 5.2497 16 6 4.2792 6.3097 6.2037 17 7 5.5880 6.1820 6.1875 18 14 3.4563 7.3248 7.5387 19 1 3.1378 6.4531 8.6980 20 1 4.3736 8.4093 7.9720 21 1 2.2034 7.9191 7.0073 22 6 3.1157 4.3047 3.2210 23 6 5.6996 2.5547 -0.0590 24 6 5.6011 2.4027 -1.5861 25 6 4.2291 3.0903 -1.4872 26 1 -0.3633 0.5695 0.8554 27 1 -0.3633 0.4561 -0.9209 28 1 -0.3634 -1.0256 0.0654 29 1 1.6390 1.8684 0.8563 30 1 1.7400 1.8234 -0.9202 31 1 3.8952 0.5472 -0.7162 32 1 3.8073 0.7495 1.0500 33 1 3.9969 1.5975 3.3101 34 1 5.1074 1.8199 1.9337 35 1 6.2348 2.1070 4.1695 36 1 6.3299 3.5608 3.1463 37 1 4.2709 3.0799 5.3484 38 1 5.7019 4.1289 5.4876 39 1 6.1261 6.6151 6.8686 40 1 2.6270 5.1197 2.6872 41 1 2.3779 3.7513 3.8019 42 1 6.1319 1.6869 0.4391 43 1 6.1527 3.4940 0.2579 44 1 6.3432 2.9854 -2.1317 45 1 5.5470 1.3662 -1.9192 46 1 4.2788 4.1767 -1.5607 47 1 3.4747 2.6558 -2.1430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:04 Heat of formation + Delta-G solvation = -91.562999 kcal Electronic energy + Delta-G solvation = -25639.728361 eV Core-core repulsion = 22207.978973 eV Total energy + Delta-G solvation = -3431.749387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.06726 -39.47391 -38.64105 -38.06771 -35.38050 -33.17871 -32.49198 -31.93251 -28.21615 -27.25471 -26.77082 -26.53416 -25.42108 -23.64517 -23.33692 -21.83321 -20.47073 -19.29697 -18.48193 -17.80639 -17.46322 -17.28283 -16.85229 -16.63180 -16.11259 -15.92556 -15.61838 -15.21143 -15.03996 -14.65720 -14.52155 -14.31984 -13.92155 -13.62726 -13.44723 -13.38883 -13.21491 -12.87546 -12.72780 -12.67844 -12.53495 -12.29465 -12.14497 -12.05999 -11.87978 -11.83797 -11.62944 -11.41043 -11.31487 -11.08297 -10.85809 -10.67449 -10.49605 -10.38132 -9.48633 -8.12293 -6.27831 1.39078 1.40230 1.50285 1.64106 2.10776 2.42310 2.66122 3.13944 3.35573 3.54539 3.68628 3.85984 3.88783 4.08464 4.11400 4.20811 4.24784 4.33828 4.42867 4.47911 4.50737 4.51895 4.58638 4.65123 4.76737 4.79948 4.81328 4.83737 4.84736 4.91198 4.94996 5.00892 5.08017 5.12387 5.16163 5.24074 5.28522 5.45739 5.51840 5.57859 5.59497 5.91290 6.11873 6.12278 6.32719 6.58363 6.81337 7.22514 7.40372 8.91275 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.004317 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.482726 B = 6484.682295 C = 7086.985502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.064 3.936 4 C -0.084 4.084 5 C -0.102 4.102 6 C 0.516 3.484 7 O -0.597 6.597 8 N -0.603 5.603 9 C 0.104 3.896 10 C -0.126 4.126 11 C -0.105 4.105 12 C 0.043 3.957 13 H -0.016 1.016 14 C -0.540 4.540 15 H 0.050 0.950 16 C 0.019 3.981 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.129 3.871 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.024 0.976 30 H 0.050 0.950 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -15.656 -13.529 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.013 4.013 4 C -0.121 4.121 5 C -0.106 4.106 6 C 0.306 3.694 7 O -0.478 6.478 8 N -0.333 5.333 9 C -0.017 4.017 10 C -0.164 4.164 11 C -0.143 4.143 12 C 0.024 3.976 13 H 0.002 0.998 14 C -0.578 4.578 15 H 0.068 0.932 16 C -0.181 4.181 17 N -0.551 5.551 18 Si 0.780 3.220 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.198 1.198 22 C 0.007 3.993 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.157 4.157 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.130 0.870 46 H 0.083 0.917 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.012 -15.279 -13.627 20.498 hybrid contribution -0.822 1.749 1.234 2.293 sum -1.834 -13.530 -12.393 18.440 Atomic orbital electron populations 1.22928 0.79812 1.04005 1.00387 1.87785 1.21141 1.27668 1.95504 1.22440 0.94852 0.84398 0.99601 1.21327 0.92098 0.93078 1.05594 1.22206 0.98418 0.94502 0.95439 1.21216 0.79104 0.86214 0.82877 1.90618 1.44613 1.33970 1.78629 1.48320 1.48195 1.31396 1.05396 1.22179 0.92218 0.88272 0.99030 1.21909 0.97582 0.99774 0.97175 1.21419 0.99387 0.95704 0.97807 1.18772 0.92803 0.93423 0.92633 0.99784 1.21426 0.93283 1.31365 1.11740 0.93172 1.25674 0.95380 0.97208 0.99803 1.70005 1.05179 1.44463 1.35454 0.85608 0.78329 0.78560 0.79472 1.19566 1.20812 1.19806 1.21437 0.95760 0.92266 0.89860 1.23045 0.90924 1.03265 0.98880 1.22832 0.95761 1.02430 0.94678 1.22888 0.99521 1.00370 0.92882 0.94508 0.93327 0.87507 0.95784 0.93128 0.86976 0.89324 0.90563 0.86598 0.89104 0.93607 0.94555 0.91853 0.92894 0.93274 0.92362 0.87657 0.91416 0.90158 0.86990 0.91737 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.40 -9.33 10.70 -148.98 -1.59 -10.92 16 3 C 0.06 1.56 5.49 71.98 0.40 1.95 16 4 C -0.08 -1.69 4.64 30.60 0.14 -1.55 16 5 C -0.10 -2.52 0.32 -52.34 -0.02 -2.53 16 6 C 0.52 18.70 5.46 87.66 0.48 19.17 16 7 O -0.60 -26.96 15.56 -3.02 -0.05 -27.01 16 8 N -0.60 -22.36 2.98 -819.74 -2.44 -24.81 16 9 C 0.10 3.03 5.05 86.36 0.44 3.47 16 10 C -0.13 -4.31 6.08 30.67 0.19 -4.12 16 11 C -0.10 -4.78 4.96 30.62 0.15 -4.63 16 12 C 0.04 2.21 2.24 -11.60 -0.03 2.19 16 13 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 14 C -0.54 -30.49 8.57 25.60 0.22 -30.27 16 15 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 16 C 0.02 1.04 5.30 84.65 0.45 1.49 16 17 N -0.91 -52.62 11.31 21.45 0.24 -52.37 16 18 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 C 0.13 5.90 5.64 86.22 0.49 6.38 16 23 C -0.12 -2.47 5.76 31.12 0.18 -2.29 16 24 C -0.12 -1.87 7.73 31.12 0.24 -1.63 16 25 C -0.12 -2.68 6.77 31.18 0.21 -2.47 16 26 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.02 0.71 7.43 -2.39 -0.02 0.69 16 30 H 0.05 1.23 7.61 -2.39 -0.02 1.21 16 31 H 0.11 1.68 7.33 -2.39 -0.02 1.67 16 32 H 0.09 1.69 6.11 -2.39 -0.01 1.67 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.12 2.54 3.23 -2.38 -0.01 2.53 16 35 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 3.30 6.04 -2.38 -0.01 3.29 16 39 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.05 2.48 7.00 -2.39 -0.02 2.46 16 41 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.11 1.55 7.03 -2.39 -0.02 1.53 16 43 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 45 H 0.11 1.18 7.63 -2.38 -0.02 1.16 16 46 H 0.06 1.82 7.70 -2.39 -0.02 1.80 16 47 H 0.08 1.64 7.67 -2.39 -0.02 1.62 16 Total: -1.00 -70.20 356.76 3.90 -66.29 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.94 Total: 15.85 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.78 Total: -13.14 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.20 Total: -77.18 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.64 Total: -37.93 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.20 3.90 -66.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.269 kcal (2) G-P(sol) polarization free energy of solvation -70.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds