Wall clock time and date at job start Tue Mar 31 2020 08:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00459 * 2 1 4 4 C 1.52999 * 109.47307 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46677 * 174.84265 * 4 3 2 6 6 C 1.50693 * 112.85461 * 53.65978 * 5 4 3 7 7 O 1.21292 * 120.00093 * 250.91062 * 6 5 4 8 8 N 1.34778 * 120.00306 * 70.90149 * 6 5 4 9 9 C 1.46923 * 120.63030 * 356.28711 * 8 6 5 10 10 C 1.52765 * 109.00763 * 233.58193 * 9 8 6 11 11 C 1.53040 * 109.38440 * 305.58660 * 10 9 8 12 12 C 1.53047 * 109.53701 * 61.23893 * 11 10 9 13 13 H 1.08995 * 109.49566 * 58.58680 * 12 11 10 14 14 C 1.50699 * 109.49580 * 178.68747 * 12 11 10 15 15 H 1.07995 * 120.00336 * 119.84254 * 14 12 11 16 16 C 1.37878 * 119.99595 * 299.83265 * 14 12 11 17 17 N 1.31510 * 120.00491 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99596 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47306 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47068 * 120.00446 * 18 16 14 21 21 H 1.48504 * 109.46908 * 240.00263 * 18 16 14 22 22 C 1.46925 * 120.63139 * 176.56222 * 8 6 5 23 23 C 1.53783 * 113.61705 * 282.34681 * 5 4 3 24 24 C 1.53772 * 87.08326 * 220.02504 * 23 5 4 25 25 C 1.53781 * 87.08585 * 25.43242 * 24 23 5 26 26 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46984 * 300.00299 * 1 2 3 28 28 H 1.08997 * 109.46707 * 60.00256 * 1 2 3 29 29 H 1.08997 * 109.46715 * 59.99735 * 3 2 1 30 30 H 1.09001 * 109.46572 * 300.00402 * 3 2 1 31 31 H 1.08996 * 109.47235 * 54.84093 * 4 3 2 32 32 H 1.09001 * 109.47111 * 294.84014 * 4 3 2 33 33 H 1.09004 * 109.58460 * 353.41400 * 9 8 6 34 34 H 1.08995 * 109.58950 * 113.83933 * 9 8 6 35 35 H 1.08992 * 109.56367 * 185.54888 * 10 9 8 36 36 H 1.09001 * 109.35848 * 65.49869 * 10 9 8 37 37 H 1.08994 * 109.45695 * 301.22287 * 11 10 9 38 38 H 1.08995 * 109.46087 * 181.25750 * 11 10 9 39 39 H 0.97002 * 120.00512 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.58742 * 246.15878 * 22 8 6 41 41 H 1.09007 * 109.58873 * 6.44066 * 22 8 6 42 42 H 1.09000 * 113.61010 * 334.57225 * 23 5 4 43 43 H 1.08994 * 113.61300 * 105.47316 * 23 5 4 44 44 H 1.09002 * 113.61602 * 270.88510 * 24 23 5 45 45 H 1.09001 * 113.61632 * 139.98211 * 24 23 5 46 46 H 1.09000 * 113.61624 * 220.02535 * 25 24 23 47 47 H 1.08998 * 113.69024 * 89.12810 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1573 2.5764 -0.1303 6 6 3.6517 3.5425 0.9098 7 8 2.9133 4.4492 0.5875 8 7 4.0198 3.3990 2.1984 9 6 4.8471 2.2597 2.6182 10 6 4.1532 1.5398 3.7731 11 6 3.8515 2.5428 4.8890 12 6 2.9119 3.6291 4.3604 13 1 1.9918 3.1699 3.9990 14 6 2.5897 4.5982 5.4685 15 1 2.8467 5.6420 5.3648 16 6 1.9666 4.1523 6.6148 17 7 1.6540 2.8812 6.7414 18 14 1.5666 5.3537 7.9882 19 1 2.0175 6.7149 7.6021 20 1 0.1004 5.3665 8.2232 21 1 2.2635 4.9348 9.2309 22 6 3.5964 4.3757 3.2111 23 6 4.1220 3.1360 -1.5623 24 6 5.5371 3.6781 -1.3013 25 6 5.6896 2.5570 -0.2598 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8507 0.5661 -0.8410 32 1 3.8640 0.7253 0.9317 33 1 4.9718 1.5712 1.7824 34 1 5.8223 2.6180 2.9478 35 1 4.8036 0.7537 4.1566 36 1 3.2214 1.1003 3.4172 37 1 4.7812 3.0001 5.2273 38 1 3.3765 2.0262 5.7229 39 1 1.2159 2.5673 7.5480 40 1 4.4675 4.9101 3.5901 41 1 2.8981 5.0845 2.7658 42 1 4.0850 2.3647 -2.3316 43 1 3.3754 3.9165 -1.7078 44 1 5.5486 4.6791 -0.8700 45 1 6.2081 3.5759 -2.1542 46 1 6.2083 2.8702 0.6462 47 1 6.0812 1.6269 -0.6717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:08 Heat of formation + Delta-G solvation = -72.247596 kcal Electronic energy + Delta-G solvation = -25878.663469 eV Core-core repulsion = 22447.751661 eV Total energy + Delta-G solvation = -3430.911809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91114 -38.00411 -37.53852 -36.47592 -33.51840 -31.87887 -31.32145 -30.18819 -27.02962 -25.95052 -25.36896 -24.95099 -24.23217 -22.01471 -21.66477 -21.02671 -19.18055 -17.93908 -16.51652 -16.48034 -16.10804 -15.95825 -15.53931 -15.17978 -14.82556 -14.58829 -14.12057 -14.04645 -13.56775 -13.31506 -12.98668 -12.79569 -12.57165 -12.43339 -12.33454 -12.03598 -11.91854 -11.69201 -11.24843 -11.11873 -10.99374 -10.95181 -10.79349 -10.70485 -10.30744 -10.28124 -10.20072 -9.94179 -9.78055 -9.57693 -9.46619 -9.19454 -8.80968 -8.39970 -7.89837 -6.02952 -4.10138 3.00017 3.27706 3.35882 3.39445 3.48930 3.74314 4.41067 4.41649 4.55839 4.67776 4.78461 4.96775 5.17703 5.25434 5.26517 5.36293 5.39856 5.46008 5.51128 5.60655 5.61492 5.63532 5.69397 5.74459 5.81544 5.84190 5.94720 5.98437 6.08666 6.15260 6.21740 6.31832 6.34462 6.41824 6.48584 6.65869 6.81880 6.97372 7.16763 7.19651 7.33268 7.68361 7.90703 8.01612 8.06959 8.36457 8.64162 8.93810 9.54915 11.02530 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.004898 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.018511 B = 5715.337133 C = 6482.271203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.061 3.939 4 C -0.100 4.100 5 C -0.104 4.104 6 C 0.534 3.466 7 O -0.549 6.549 8 N -0.597 5.597 9 C 0.102 3.898 10 C -0.136 4.136 11 C -0.112 4.112 12 C 0.041 3.959 13 H 0.028 0.972 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.116 3.884 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.127 4.127 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.260 0.740 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 -5.702 -14.146 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.138 4.138 5 C -0.107 4.107 6 C 0.320 3.680 7 O -0.427 6.427 8 N -0.328 5.328 9 C -0.021 4.021 10 C -0.174 4.174 11 C -0.150 4.150 12 C 0.022 3.978 13 H 0.046 0.954 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.005 4.005 23 C -0.157 4.157 24 C -0.178 4.178 25 C -0.165 4.165 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.004 -5.491 -14.166 16.336 hybrid contribution -0.487 0.718 0.983 1.311 sum 5.517 -4.773 -13.183 15.067 Atomic orbital electron populations 1.22721 0.81020 1.02450 1.00240 1.87799 1.19783 1.28153 1.95522 1.22515 0.93637 0.84438 1.00942 1.21573 0.93675 0.94590 1.03947 1.21926 0.97436 0.95039 0.96307 1.19774 0.80517 0.84891 0.82776 1.90651 1.36850 1.34604 1.80606 1.48214 1.50987 1.26304 1.07300 1.21907 0.93807 0.88059 0.98329 1.21941 0.99854 0.98780 0.96859 1.21620 0.98777 0.96750 0.97813 1.18958 0.93969 0.93564 0.91312 0.95377 1.21111 1.38565 0.94548 1.00978 0.92465 1.24933 0.95387 0.95137 0.98324 1.69883 1.41479 1.13683 1.27676 0.86538 0.78051 0.81451 0.81982 1.19736 1.21038 1.21024 1.22011 0.98944 0.90931 0.88585 1.22871 0.98069 1.00827 0.93894 1.22818 0.97182 0.98728 0.99062 1.23087 0.93304 0.99873 1.00226 0.89773 0.93720 0.94291 0.92827 0.93129 0.90155 0.89889 0.90153 0.92124 0.92416 0.92365 0.94612 0.88673 0.93032 0.92711 0.90387 0.89536 0.89983 0.90099 0.91185 0.90591 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.39 -5.82 10.70 -35.23 -0.38 -6.20 16 3 C 0.06 0.91 5.50 37.16 0.20 1.11 16 4 C -0.10 -1.29 4.71 -26.73 -0.13 -1.41 16 5 C -0.10 -1.38 0.32 -154.85 -0.05 -1.43 16 6 C 0.53 9.50 5.17 -10.99 -0.06 9.45 16 7 O -0.55 -11.67 15.44 5.55 0.09 -11.58 16 8 N -0.60 -10.95 2.98 -173.03 -0.52 -11.46 16 9 C 0.10 1.58 4.57 -3.93 -0.02 1.57 16 10 C -0.14 -2.44 6.06 -26.83 -0.16 -2.60 16 11 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 12 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.51 -13.88 8.56 -34.44 -0.29 -14.17 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.12 2.51 5.67 -3.71 -0.02 2.49 16 23 C -0.12 -1.41 6.89 -25.92 -0.18 -1.59 16 24 C -0.14 -1.53 7.80 -25.92 -0.20 -1.73 16 25 C -0.13 -1.37 6.02 -25.91 -0.16 -1.52 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.95 7.45 -51.93 -0.39 0.56 16 30 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 31 H 0.08 0.87 8.05 -51.93 -0.42 0.46 16 32 H 0.08 1.09 5.82 -51.93 -0.30 0.79 16 33 H 0.08 1.05 3.42 -51.93 -0.18 0.87 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 2.42 6.05 -51.93 -0.31 2.11 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.82 7.00 -51.93 -0.36 1.45 16 42 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 43 H 0.08 1.13 7.37 -51.93 -0.38 0.75 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.86 6.72 -51.93 -0.35 0.51 16 47 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -30.11 357.66 -8.33 -38.44 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.14 Total: 2.19 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.38 Total: -8.54 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.11 Total: -35.77 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.29 Total: -17.78 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.11 -8.33 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.806 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds