Wall clock time and date at job start Tue Mar 31 2020 08:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00459 * 2 1 4 4 C 1.52999 * 109.47307 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46677 * 174.84265 * 4 3 2 6 6 C 1.50693 * 112.85461 * 53.65978 * 5 4 3 7 7 O 1.21292 * 120.00093 * 250.91062 * 6 5 4 8 8 N 1.34778 * 120.00306 * 70.90149 * 6 5 4 9 9 C 1.46923 * 120.63030 * 356.28711 * 8 6 5 10 10 C 1.52765 * 109.00763 * 233.58193 * 9 8 6 11 11 C 1.53040 * 109.38440 * 305.58660 * 10 9 8 12 12 C 1.53047 * 109.53701 * 61.23893 * 11 10 9 13 13 H 1.08995 * 109.49566 * 58.58680 * 12 11 10 14 14 C 1.50699 * 109.49580 * 178.68747 * 12 11 10 15 15 H 1.07995 * 120.00336 * 119.84254 * 14 12 11 16 16 C 1.37878 * 119.99595 * 299.83265 * 14 12 11 17 17 N 1.31510 * 120.00491 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99596 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47306 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47068 * 120.00446 * 18 16 14 21 21 H 1.48504 * 109.46908 * 240.00263 * 18 16 14 22 22 C 1.46925 * 120.63139 * 176.56222 * 8 6 5 23 23 C 1.53783 * 113.61705 * 282.34681 * 5 4 3 24 24 C 1.53772 * 87.08326 * 220.02504 * 23 5 4 25 25 C 1.53781 * 87.08585 * 25.43242 * 24 23 5 26 26 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46984 * 300.00299 * 1 2 3 28 28 H 1.08997 * 109.46707 * 60.00256 * 1 2 3 29 29 H 1.08997 * 109.46715 * 59.99735 * 3 2 1 30 30 H 1.09001 * 109.46572 * 300.00402 * 3 2 1 31 31 H 1.08996 * 109.47235 * 54.84093 * 4 3 2 32 32 H 1.09001 * 109.47111 * 294.84014 * 4 3 2 33 33 H 1.09004 * 109.58460 * 353.41400 * 9 8 6 34 34 H 1.08995 * 109.58950 * 113.83933 * 9 8 6 35 35 H 1.08992 * 109.56367 * 185.54888 * 10 9 8 36 36 H 1.09001 * 109.35848 * 65.49869 * 10 9 8 37 37 H 1.08994 * 109.45695 * 301.22287 * 11 10 9 38 38 H 1.08995 * 109.46087 * 181.25750 * 11 10 9 39 39 H 0.97002 * 120.00512 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.58742 * 246.15878 * 22 8 6 41 41 H 1.09007 * 109.58873 * 6.44066 * 22 8 6 42 42 H 1.09000 * 113.61010 * 334.57225 * 23 5 4 43 43 H 1.08994 * 113.61300 * 105.47316 * 23 5 4 44 44 H 1.09002 * 113.61602 * 270.88510 * 24 23 5 45 45 H 1.09001 * 113.61632 * 139.98211 * 24 23 5 46 46 H 1.09000 * 113.61624 * 220.02535 * 25 24 23 47 47 H 1.08998 * 113.69024 * 89.12810 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1573 2.5764 -0.1303 6 6 3.6517 3.5425 0.9098 7 8 2.9133 4.4492 0.5875 8 7 4.0198 3.3990 2.1984 9 6 4.8471 2.2597 2.6182 10 6 4.1532 1.5398 3.7731 11 6 3.8515 2.5428 4.8890 12 6 2.9119 3.6291 4.3604 13 1 1.9918 3.1699 3.9990 14 6 2.5897 4.5982 5.4685 15 1 2.8467 5.6420 5.3648 16 6 1.9666 4.1523 6.6148 17 7 1.6540 2.8812 6.7414 18 14 1.5666 5.3537 7.9882 19 1 2.0175 6.7149 7.6021 20 1 0.1004 5.3665 8.2232 21 1 2.2635 4.9348 9.2309 22 6 3.5964 4.3757 3.2111 23 6 4.1220 3.1360 -1.5623 24 6 5.5371 3.6781 -1.3013 25 6 5.6896 2.5570 -0.2598 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8507 0.5661 -0.8410 32 1 3.8640 0.7253 0.9317 33 1 4.9718 1.5712 1.7824 34 1 5.8223 2.6180 2.9478 35 1 4.8036 0.7537 4.1566 36 1 3.2214 1.1003 3.4172 37 1 4.7812 3.0001 5.2273 38 1 3.3765 2.0262 5.7229 39 1 1.2159 2.5673 7.5480 40 1 4.4675 4.9101 3.5901 41 1 2.8981 5.0845 2.7658 42 1 4.0850 2.3647 -2.3316 43 1 3.3754 3.9165 -1.7078 44 1 5.5486 4.6791 -0.8700 45 1 6.2081 3.5759 -2.1542 46 1 6.2083 2.8702 0.6462 47 1 6.0812 1.6269 -0.6717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:07 Heat of formation + Delta-G solvation = -90.405275 kcal Electronic energy + Delta-G solvation = -25879.450845 eV Core-core repulsion = 22447.751661 eV Total energy + Delta-G solvation = -3431.699185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14046 -39.35714 -38.70953 -37.96098 -35.39438 -33.16129 -32.86255 -31.91628 -28.17019 -27.27227 -26.67807 -26.46850 -25.48861 -23.39780 -23.19155 -22.23237 -20.73205 -19.37346 -18.39471 -17.62464 -17.42321 -17.23896 -16.80064 -16.70979 -16.17664 -15.94607 -15.51834 -15.23741 -15.11710 -14.63614 -14.61122 -14.43545 -13.84165 -13.73299 -13.64125 -13.31346 -13.24273 -12.90935 -12.79896 -12.66363 -12.55865 -12.27739 -12.17426 -11.92069 -11.87056 -11.73670 -11.63748 -11.31056 -11.25883 -11.11004 -10.86936 -10.73590 -10.56146 -10.42254 -9.50604 -8.13098 -6.28733 1.37611 1.39722 1.51127 1.61683 2.07516 2.41538 2.67467 3.13331 3.37667 3.54735 3.62922 3.87297 3.95912 4.05247 4.11984 4.19090 4.22619 4.31661 4.42900 4.44250 4.48910 4.53872 4.55700 4.59993 4.74131 4.76368 4.82912 4.84903 4.88283 4.89835 4.95933 4.99877 5.08458 5.12119 5.15691 5.26074 5.29186 5.43631 5.52307 5.54903 5.58925 5.90032 6.08489 6.11111 6.31620 6.56206 6.81011 7.20940 7.39724 8.90828 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.004898 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.018511 B = 5715.337133 C = 6482.271203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.064 3.936 4 C -0.094 4.094 5 C -0.108 4.108 6 C 0.527 3.473 7 O -0.594 6.594 8 N -0.602 5.602 9 C 0.104 3.896 10 C -0.128 4.128 11 C -0.104 4.104 12 C 0.044 3.956 13 H -0.019 1.019 14 C -0.537 4.537 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.955 3.045 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.129 3.871 23 C -0.117 4.117 24 C -0.138 4.138 25 C -0.114 4.114 26 H 0.109 0.891 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.010 0.990 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.262 0.738 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.119 0.881 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.803 -7.296 -15.644 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.013 4.013 4 C -0.131 4.131 5 C -0.111 4.111 6 C 0.316 3.684 7 O -0.475 6.475 8 N -0.332 5.332 9 C -0.017 4.017 10 C -0.166 4.166 11 C -0.142 4.142 12 C 0.024 3.976 13 H -0.001 1.001 14 C -0.576 4.576 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.200 1.200 22 C 0.007 3.993 23 C -0.154 4.154 24 C -0.175 4.175 25 C -0.151 4.151 26 H 0.127 0.873 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.137 0.863 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.092 0.908 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.462 -7.105 -15.669 19.173 hybrid contribution -1.363 1.227 1.438 2.331 sum 7.099 -5.877 -14.231 16.955 Atomic orbital electron populations 1.22913 0.79983 1.04076 1.00104 1.87775 1.21037 1.27867 1.95460 1.22467 0.95520 0.84282 0.99001 1.21609 0.91654 0.94497 1.05364 1.21967 0.99879 0.93891 0.95392 1.20715 0.79419 0.85039 0.83184 1.90621 1.38748 1.36852 1.81320 1.48278 1.51390 1.26495 1.07087 1.22123 0.93616 0.87416 0.98574 1.21847 1.00056 0.98504 0.96212 1.21410 0.97760 0.96741 0.98329 1.18844 0.92911 0.94017 0.91789 1.00110 1.21456 1.39192 0.94822 1.02116 0.92994 1.25694 0.95178 0.96756 1.00545 1.70021 1.41790 1.15175 1.28280 0.85547 0.77716 0.79425 0.79218 1.19294 1.20909 1.19991 1.21553 0.98311 0.91053 0.88431 1.22962 0.97993 1.00920 0.93555 1.22779 0.97012 0.97573 1.00165 1.23178 0.90305 1.01416 1.00216 0.87293 0.95464 0.92871 0.97164 0.92808 0.86603 0.90014 0.86684 0.89823 0.89057 0.94319 0.94163 0.92003 0.92922 0.91893 0.93215 0.86268 0.92912 0.92670 0.88184 0.90805 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.40 -11.51 10.70 -148.98 -1.59 -13.11 16 3 C 0.06 1.88 5.50 71.98 0.40 2.28 16 4 C -0.09 -2.15 4.71 30.59 0.14 -2.01 16 5 C -0.11 -2.64 0.32 -52.40 -0.02 -2.66 16 6 C 0.53 19.03 5.17 87.65 0.45 19.48 16 7 O -0.59 -26.68 15.44 -3.07 -0.05 -26.73 16 8 N -0.60 -22.30 2.98 -819.73 -2.44 -24.74 16 9 C 0.10 3.02 4.57 86.22 0.39 3.42 16 10 C -0.13 -4.49 6.06 30.53 0.19 -4.30 16 11 C -0.10 -4.78 4.96 30.62 0.15 -4.62 16 12 C 0.04 2.26 2.25 -11.46 -0.03 2.23 16 13 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 14 C -0.54 -30.33 8.56 25.60 0.22 -30.11 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.02 0.97 5.30 84.66 0.45 1.42 16 17 N -0.91 -53.07 11.32 21.45 0.24 -52.83 16 18 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C 0.13 5.85 5.67 86.36 0.49 6.34 16 23 C -0.12 -2.49 6.89 31.12 0.21 -2.27 16 24 C -0.14 -2.57 7.80 31.12 0.24 -2.33 16 25 C -0.11 -1.94 6.02 31.12 0.19 -1.75 16 26 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.01 0.38 7.45 -2.39 -0.02 0.36 16 30 H 0.05 1.52 7.95 -2.39 -0.02 1.50 16 31 H 0.12 1.91 8.05 -2.39 -0.02 1.89 16 32 H 0.08 1.89 5.82 -2.39 -0.01 1.88 16 33 H 0.12 2.58 3.42 -2.38 -0.01 2.57 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 3.26 6.05 -2.39 -0.01 3.24 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.05 2.49 7.00 -2.38 -0.02 2.48 16 42 H 0.12 1.78 8.03 -2.39 -0.02 1.76 16 43 H 0.05 1.45 7.37 -2.39 -0.02 1.43 16 44 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.34 6.72 -2.39 -0.02 1.33 16 47 H 0.13 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -71.24 357.66 3.85 -67.39 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.93 Total: 16.87 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.73 Total: -13.03 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.20 Total: -77.57 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -1.64 Total: -39.84 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.24 3.85 -67.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.018 kcal (2) G-P(sol) polarization free energy of solvation -71.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds