Wall clock time and date at job start Tue Mar 31 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.27589 * 2 1 4 4 C 1.54947 * 110.31009 * 237.79643 * 2 1 3 5 5 C 1.55303 * 100.93981 * 204.64517 * 4 2 1 6 6 C 1.54379 * 102.25545 * 34.13412 * 5 4 2 7 7 H 1.08994 * 109.90669 * 98.20004 * 6 5 4 8 8 C 1.53005 * 109.82777 * 219.13201 * 6 5 4 9 9 C 1.53003 * 109.46814 * 184.58887 * 8 6 5 10 10 C 1.50699 * 109.47385 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99431 * 359.97438 * 10 9 8 12 12 N 1.34766 * 120.00319 * 179.97438 * 10 9 8 13 13 C 1.46924 * 120.63242 * 0.02562 * 12 10 9 14 14 C 1.53191 * 108.77817 * 126.37005 * 13 12 10 15 15 C 1.53042 * 109.31021 * 54.63576 * 14 13 12 16 16 C 1.53035 * 109.54021 * 298.63480 * 15 14 13 17 17 H 1.09001 * 109.49969 * 301.41757 * 16 15 14 18 18 C 1.50700 * 109.52578 * 181.32950 * 16 15 14 19 19 H 1.07995 * 120.00390 * 240.14861 * 18 16 15 20 20 C 1.37876 * 119.99636 * 60.15200 * 18 16 15 21 21 N 1.31516 * 120.00481 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99949 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47346 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47516 * 119.99973 * 22 20 18 25 25 H 1.48503 * 109.46985 * 239.99729 * 22 20 18 26 26 C 1.46929 * 120.63348 * 180.02562 * 12 10 9 27 27 O 1.43233 * 107.58858 * 338.64384 * 6 5 4 28 28 H 1.08993 * 109.47226 * 299.36729 * 1 2 3 29 29 H 1.09005 * 109.46689 * 59.36801 * 1 2 3 30 30 H 1.09003 * 109.47023 * 179.36411 * 1 2 3 31 31 H 1.08998 * 111.12429 * 322.55957 * 4 2 1 32 32 H 1.09001 * 111.12292 * 86.68471 * 4 2 1 33 33 H 1.09007 * 110.84588 * 275.94502 * 5 4 2 34 34 H 1.08996 * 110.84900 * 152.32997 * 5 4 2 35 35 H 1.08998 * 109.47105 * 64.58836 * 8 6 5 36 36 H 1.09001 * 109.47122 * 304.58102 * 8 6 5 37 37 H 1.09003 * 109.47570 * 59.99401 * 9 8 6 38 38 H 1.09005 * 109.47339 * 299.99640 * 9 8 6 39 39 H 1.08999 * 109.58511 * 6.58326 * 13 12 10 40 40 H 1.08999 * 109.58969 * 246.15926 * 13 12 10 41 41 H 1.09006 * 109.49784 * 294.68835 * 14 13 12 42 42 H 1.08997 * 109.52766 * 174.60233 * 14 13 12 43 43 H 1.09004 * 109.46156 * 178.61474 * 15 14 13 44 44 H 1.08999 * 109.45763 * 58.66186 * 15 14 13 45 45 H 0.96994 * 120.00544 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.59209 * 113.83860 * 26 12 10 47 47 H 1.09003 * 109.58217 * 353.41142 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0679 -0.7744 -1.2296 5 6 3.4699 -1.2034 -0.7176 6 6 3.2112 -1.4413 0.7857 7 1 3.0629 -2.5047 0.9730 8 6 4.3991 -0.9309 1.6039 9 6 4.1862 -1.2730 3.0799 10 6 5.3558 -0.7699 3.8860 11 8 6.2699 -0.1947 3.3341 12 7 5.3861 -0.9590 5.2200 13 6 4.2865 -1.6544 5.9026 14 6 4.8684 -2.8066 6.7276 15 6 5.9471 -2.2622 7.6669 16 6 7.0765 -1.6395 6.8430 17 1 7.4952 -2.3908 6.1734 18 6 8.1537 -1.1328 7.7670 19 1 8.4156 -0.0851 7.7678 20 6 8.8048 -2.0068 8.6115 21 7 8.4855 -3.2826 8.6110 22 14 10.1396 -1.3786 9.7574 23 1 10.3078 0.0844 9.5664 24 1 9.7535 -1.6533 11.1648 25 1 11.4190 -2.0677 9.4517 26 6 6.5193 -0.4737 6.0194 27 8 2.0285 -0.7157 1.1414 28 1 -0.3633 0.5039 0.8955 29 1 -0.3633 0.5237 -0.8843 30 1 -0.3633 -1.0276 -0.0114 31 1 1.4471 -1.6431 -1.4490 32 1 2.1491 -0.1227 -2.0995 33 1 4.1975 -0.4050 -0.8644 34 1 3.7966 -2.1219 -1.2051 35 1 4.4814 0.1499 1.4896 36 1 5.3146 -1.4046 1.2496 37 1 4.1037 -2.3539 3.1942 38 1 3.2706 -0.7994 3.4343 39 1 3.5895 -2.0497 5.1637 40 1 3.7675 -0.9587 6.5620 41 1 5.3080 -3.5469 6.0591 42 1 4.0759 -3.2713 7.3142 43 1 6.3457 -3.0761 8.2726 44 1 5.5123 -1.5043 8.3184 45 1 8.9438 -3.8976 9.2047 46 1 6.1822 0.3182 6.6883 47 1 7.2956 -0.0900 5.3575 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:38 Heat of formation + Delta-G solvation = -109.873361 kcal Electronic energy + Delta-G solvation = -24356.968515 eV Core-core repulsion = 20924.425131 eV Total energy + Delta-G solvation = -3432.543384 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01918 -39.37395 -36.76918 -33.93618 -33.41449 -32.46867 -31.34706 -30.91043 -29.96529 -26.80757 -25.04899 -24.48189 -22.85455 -21.75618 -21.63186 -20.63879 -19.59840 -18.13990 -17.24165 -16.82218 -16.24313 -15.90835 -15.21669 -15.00113 -14.57376 -14.47056 -13.93329 -13.74239 -13.45889 -13.28309 -13.08885 -12.85498 -12.69963 -12.52473 -12.35879 -11.97713 -11.92321 -11.90240 -11.73279 -11.20663 -11.04180 -11.01446 -10.94626 -10.83443 -10.77718 -10.66010 -10.24833 -9.93619 -9.77257 -9.63650 -9.43546 -9.18166 -8.78628 -8.37418 -7.83369 -6.00781 -4.07645 3.15576 3.29476 3.37562 3.41899 3.53960 3.64805 4.25869 4.43499 4.47644 4.52490 4.85804 4.91245 4.97181 5.07487 5.21313 5.24450 5.29143 5.32093 5.40651 5.44898 5.49414 5.52758 5.64551 5.69074 5.74416 5.78913 5.83875 5.85920 5.91023 6.15992 6.17795 6.28916 6.36918 6.44701 6.52248 6.70232 6.84949 6.93563 7.02859 7.20571 7.36489 7.70920 7.94573 8.08379 8.10245 8.39727 8.73864 8.96583 9.57185 11.04831 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.002797 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.140689 B =10007.964255 C =10306.176458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.080 0.920 8 C -0.111 4.111 9 C -0.135 4.135 10 C 0.507 3.493 11 O -0.556 6.556 12 N -0.605 5.605 13 C 0.109 3.891 14 C -0.135 4.135 15 C -0.113 4.113 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.116 3.884 27 O -0.373 6.373 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.035 0.965 45 H 0.260 0.740 46 H 0.053 0.947 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 2.054 -16.166 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.086 0.914 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.023 3.977 7 H 0.098 0.902 8 C -0.149 4.149 9 C -0.174 4.174 10 C 0.295 3.705 11 O -0.436 6.436 12 N -0.337 5.337 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.151 4.151 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.551 4.551 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.005 4.005 27 O -0.293 6.293 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.635 2.201 -16.149 22.585 hybrid contribution 0.794 0.146 0.618 1.017 sum -14.841 2.347 -15.531 21.610 Atomic orbital electron populations 1.21883 0.93895 1.02688 1.02319 1.22942 0.94684 0.95699 0.85036 0.91352 1.23315 0.96424 1.00806 0.98448 1.23171 0.97646 1.02887 0.95259 1.22804 0.85438 0.96082 0.93399 0.90191 1.21722 0.97086 1.02661 0.93429 1.21612 0.97943 1.02455 0.95439 1.20621 0.87922 0.79601 0.82318 1.90642 1.38881 1.43679 1.70370 1.48318 1.22400 1.56338 1.06606 1.21740 0.88659 0.94868 0.96130 1.22003 0.99525 0.96798 0.98992 1.21627 0.94190 1.01535 0.97703 1.18978 0.93029 0.92363 0.93564 0.95318 1.21128 1.18493 0.94787 1.20689 0.92447 1.24943 0.96972 0.94833 0.97139 1.69883 1.41781 1.02487 1.38691 0.86527 0.81778 0.79104 0.80546 1.19731 1.21045 1.21039 1.21978 0.86892 0.98230 0.93354 1.88450 1.42162 1.64764 1.33963 0.91832 0.91462 0.92005 0.90401 0.90133 0.90143 0.89997 0.90850 0.90242 0.89389 0.88756 0.90976 0.92018 0.92428 0.92490 0.88687 0.94603 0.93054 0.92863 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.62 37.16 0.36 -0.73 16 2 C 0.07 0.65 4.08 -25.70 -0.10 0.55 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.15 -1.09 6.57 -24.48 -0.16 -1.25 16 5 C -0.15 -1.24 6.54 -24.79 -0.16 -1.41 16 6 C 0.08 0.83 3.52 -26.01 -0.09 0.73 16 7 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.11 -1.40 4.07 -26.73 -0.11 -1.51 16 9 C -0.13 -1.85 3.96 -27.88 -0.11 -1.96 16 10 C 0.51 9.43 7.70 -10.99 -0.08 9.34 16 11 O -0.56 -12.26 15.39 5.55 0.09 -12.17 16 12 N -0.60 -11.57 2.97 -172.75 -0.51 -12.08 16 13 C 0.11 1.75 6.34 -3.71 -0.02 1.72 16 14 C -0.13 -2.44 6.08 -26.61 -0.16 -2.60 16 15 C -0.11 -2.56 4.96 -26.69 -0.13 -2.69 16 16 C 0.04 0.99 2.25 -91.64 -0.21 0.79 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 18 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 22 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 C 0.12 2.60 5.66 -3.69 -0.02 2.58 16 27 O -0.37 -4.27 10.32 -35.23 -0.36 -4.63 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.51 8.06 -51.93 -0.42 0.10 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.67 7.85 -51.92 -0.41 0.27 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.08 1.04 8.10 -51.93 -0.42 0.61 16 37 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 38 H 0.09 1.22 7.68 -51.93 -0.40 0.82 16 39 H 0.07 0.94 5.93 -51.93 -0.31 0.63 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 2.44 6.05 -51.93 -0.31 2.13 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.87 7.00 -51.93 -0.36 1.50 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -30.95 364.44 -9.58 -40.54 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.49 Total: 0.31 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.40 Total: -9.17 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.11 Total: -36.65 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.28 Total: -16.80 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.95 -9.58 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.337 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds