Wall clock time and date at job start Tue Mar 31 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.27589 * 2 1 4 4 C 1.54947 * 110.31009 * 237.79643 * 2 1 3 5 5 C 1.55303 * 100.93981 * 204.64517 * 4 2 1 6 6 C 1.54379 * 102.25545 * 34.13412 * 5 4 2 7 7 H 1.08994 * 109.90669 * 98.20004 * 6 5 4 8 8 C 1.53005 * 109.82777 * 219.13201 * 6 5 4 9 9 C 1.53003 * 109.46814 * 184.58887 * 8 6 5 10 10 C 1.50699 * 109.47385 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99431 * 359.97438 * 10 9 8 12 12 N 1.34766 * 120.00319 * 179.97438 * 10 9 8 13 13 C 1.46924 * 120.63242 * 0.02562 * 12 10 9 14 14 C 1.53191 * 108.77817 * 126.37005 * 13 12 10 15 15 C 1.53042 * 109.31021 * 54.63576 * 14 13 12 16 16 C 1.53035 * 109.54021 * 298.63480 * 15 14 13 17 17 H 1.09001 * 109.49969 * 301.41757 * 16 15 14 18 18 C 1.50700 * 109.52578 * 181.32950 * 16 15 14 19 19 H 1.07995 * 120.00390 * 240.14861 * 18 16 15 20 20 C 1.37876 * 119.99636 * 60.15200 * 18 16 15 21 21 N 1.31516 * 120.00481 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99949 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47346 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47516 * 119.99973 * 22 20 18 25 25 H 1.48503 * 109.46985 * 239.99729 * 22 20 18 26 26 C 1.46929 * 120.63348 * 180.02562 * 12 10 9 27 27 O 1.43233 * 107.58858 * 338.64384 * 6 5 4 28 28 H 1.08993 * 109.47226 * 299.36729 * 1 2 3 29 29 H 1.09005 * 109.46689 * 59.36801 * 1 2 3 30 30 H 1.09003 * 109.47023 * 179.36411 * 1 2 3 31 31 H 1.08998 * 111.12429 * 322.55957 * 4 2 1 32 32 H 1.09001 * 111.12292 * 86.68471 * 4 2 1 33 33 H 1.09007 * 110.84588 * 275.94502 * 5 4 2 34 34 H 1.08996 * 110.84900 * 152.32997 * 5 4 2 35 35 H 1.08998 * 109.47105 * 64.58836 * 8 6 5 36 36 H 1.09001 * 109.47122 * 304.58102 * 8 6 5 37 37 H 1.09003 * 109.47570 * 59.99401 * 9 8 6 38 38 H 1.09005 * 109.47339 * 299.99640 * 9 8 6 39 39 H 1.08999 * 109.58511 * 6.58326 * 13 12 10 40 40 H 1.08999 * 109.58969 * 246.15926 * 13 12 10 41 41 H 1.09006 * 109.49784 * 294.68835 * 14 13 12 42 42 H 1.08997 * 109.52766 * 174.60233 * 14 13 12 43 43 H 1.09004 * 109.46156 * 178.61474 * 15 14 13 44 44 H 1.08999 * 109.45763 * 58.66186 * 15 14 13 45 45 H 0.96994 * 120.00544 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.59209 * 113.83860 * 26 12 10 47 47 H 1.09003 * 109.58217 * 353.41142 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0679 -0.7744 -1.2296 5 6 3.4699 -1.2034 -0.7176 6 6 3.2112 -1.4413 0.7857 7 1 3.0629 -2.5047 0.9730 8 6 4.3991 -0.9309 1.6039 9 6 4.1862 -1.2730 3.0799 10 6 5.3558 -0.7699 3.8860 11 8 6.2699 -0.1947 3.3341 12 7 5.3861 -0.9590 5.2200 13 6 4.2865 -1.6544 5.9026 14 6 4.8684 -2.8066 6.7276 15 6 5.9471 -2.2622 7.6669 16 6 7.0765 -1.6395 6.8430 17 1 7.4952 -2.3908 6.1734 18 6 8.1537 -1.1328 7.7670 19 1 8.4156 -0.0851 7.7678 20 6 8.8048 -2.0068 8.6115 21 7 8.4855 -3.2826 8.6110 22 14 10.1396 -1.3786 9.7574 23 1 10.3078 0.0844 9.5664 24 1 9.7535 -1.6533 11.1648 25 1 11.4190 -2.0677 9.4517 26 6 6.5193 -0.4737 6.0194 27 8 2.0285 -0.7157 1.1414 28 1 -0.3633 0.5039 0.8955 29 1 -0.3633 0.5237 -0.8843 30 1 -0.3633 -1.0276 -0.0114 31 1 1.4471 -1.6431 -1.4490 32 1 2.1491 -0.1227 -2.0995 33 1 4.1975 -0.4050 -0.8644 34 1 3.7966 -2.1219 -1.2051 35 1 4.4814 0.1499 1.4896 36 1 5.3146 -1.4046 1.2496 37 1 4.1037 -2.3539 3.1942 38 1 3.2706 -0.7994 3.4343 39 1 3.5895 -2.0497 5.1637 40 1 3.7675 -0.9587 6.5620 41 1 5.3080 -3.5469 6.0591 42 1 4.0759 -3.2713 7.3142 43 1 6.3457 -3.0761 8.2726 44 1 5.5123 -1.5043 8.3184 45 1 8.9438 -3.8976 9.2047 46 1 6.1822 0.3182 6.6883 47 1 7.2956 -0.0900 5.3575 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:38 Heat of formation + Delta-G solvation = -127.534538 kcal Electronic energy + Delta-G solvation = -24357.734361 eV Core-core repulsion = 20924.425131 eV Total energy + Delta-G solvation = -3433.309230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.20413 -40.45075 -38.42040 -35.40081 -34.83740 -33.15203 -33.06180 -32.18610 -31.29984 -27.90262 -26.89528 -25.84651 -23.93399 -23.27728 -22.42187 -21.62503 -21.08569 -19.68046 -18.56508 -17.99499 -17.84419 -16.92480 -16.79763 -16.38131 -16.29643 -15.28902 -15.10748 -14.95022 -14.80717 -14.62291 -14.38880 -14.23652 -13.96123 -13.63394 -13.57519 -13.23012 -13.15620 -12.89929 -12.76438 -12.60736 -12.58345 -12.53553 -12.03338 -11.98592 -11.85654 -11.70455 -11.64793 -11.60807 -11.57479 -11.27121 -10.86894 -10.65554 -10.44069 -10.39229 -9.47849 -8.12127 -6.27348 1.38554 1.40575 1.52147 1.69037 2.14869 2.43014 2.87526 3.14179 3.52683 3.64130 3.84508 3.91855 4.05120 4.15019 4.21056 4.25610 4.28951 4.36314 4.42155 4.52449 4.54381 4.58586 4.64629 4.74011 4.78157 4.83691 4.85671 4.87126 4.93944 4.96744 5.00206 5.08462 5.12243 5.16617 5.25612 5.29819 5.34850 5.38685 5.48374 5.57555 5.60309 5.92165 6.12461 6.21223 6.33559 6.59418 6.82287 7.25088 7.40780 8.91860 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.002797 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.140689 B =10007.964255 C =10306.176458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 H 0.062 0.938 4 C -0.144 4.144 5 C -0.153 4.153 6 C 0.083 3.917 7 H 0.093 0.907 8 C -0.107 4.107 9 C -0.122 4.122 10 C 0.499 3.501 11 O -0.599 6.599 12 N -0.610 5.610 13 C 0.110 3.890 14 C -0.127 4.127 15 C -0.107 4.107 16 C 0.042 3.958 17 H -0.014 1.014 18 C -0.538 4.538 19 H 0.051 0.949 20 C 0.016 3.984 21 N -0.913 5.913 22 Si 0.956 3.044 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.282 1.282 26 C 0.129 3.871 27 O -0.393 6.393 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.262 0.738 46 H 0.058 0.942 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.334 1.737 -16.895 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.006 3.994 3 H 0.080 0.920 4 C -0.182 4.182 5 C -0.190 4.190 6 C 0.025 3.975 7 H 0.111 0.889 8 C -0.145 4.145 9 C -0.162 4.162 10 C 0.290 3.710 11 O -0.481 6.481 12 N -0.341 5.341 13 C -0.012 4.012 14 C -0.165 4.165 15 C -0.145 4.145 16 C 0.022 3.978 17 H 0.004 0.996 18 C -0.576 4.576 19 H 0.069 0.931 20 C -0.183 4.183 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.208 1.208 26 C 0.006 3.994 27 O -0.314 6.314 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.927 1.876 -16.880 24.694 hybrid contribution 1.529 0.259 0.834 1.760 sum -16.398 2.135 -16.046 23.042 Atomic orbital electron populations 1.21872 0.92702 1.02959 1.02861 1.23146 0.95678 0.95448 0.85165 0.91990 1.23305 0.95510 1.01193 0.98146 1.23186 0.98304 1.03470 0.94057 1.22790 0.84189 0.96351 0.94137 0.88950 1.21685 0.98133 1.01459 0.93257 1.21637 0.95826 1.03661 0.95028 1.21575 0.88708 0.78633 0.82100 1.90619 1.40888 1.45527 1.71100 1.48420 1.22174 1.56579 1.06960 1.21982 0.87955 0.94179 0.97081 1.21913 0.98850 0.97355 0.98398 1.21432 0.94794 1.00287 0.97969 1.18877 0.93586 0.92235 0.93060 0.99568 1.21468 1.19864 0.94698 1.21597 0.93107 1.25700 0.99019 0.95034 0.98536 1.70011 1.42603 1.03374 1.39254 0.85539 0.78955 0.78570 0.78791 1.19398 1.20040 1.20779 1.21533 0.87729 0.97209 0.92887 1.88419 1.42316 1.65096 1.35529 0.92612 0.89617 0.91848 0.89392 0.88627 0.90827 0.88514 0.92765 0.91170 0.87042 0.87075 0.86822 0.90249 0.93569 0.89150 0.91889 0.94487 0.92889 0.92365 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.62 71.98 0.69 -1.11 16 2 C 0.06 0.98 4.08 31.26 0.13 1.11 16 3 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.14 -1.69 6.57 32.05 0.21 -1.48 16 5 C -0.15 -2.20 6.54 31.85 0.21 -1.99 16 6 C 0.08 1.53 3.52 31.06 0.11 1.64 16 7 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 8 C -0.11 -2.60 4.07 30.60 0.12 -2.47 16 9 C -0.12 -3.10 3.96 29.85 0.12 -2.98 16 10 C 0.50 18.38 7.70 87.66 0.67 19.06 16 11 O -0.60 -27.17 15.39 -3.05 -0.05 -27.21 16 12 N -0.61 -22.99 2.97 -818.85 -2.43 -25.43 16 13 C 0.11 3.20 6.34 86.36 0.55 3.74 16 14 C -0.13 -4.37 6.08 30.67 0.19 -4.18 16 15 C -0.11 -4.89 4.96 30.62 0.15 -4.74 16 16 C 0.04 2.16 2.25 -11.45 -0.03 2.13 16 17 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 18 C -0.54 -30.52 8.56 25.60 0.22 -30.30 16 19 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 20 C 0.02 0.91 5.30 84.65 0.45 1.36 16 21 N -0.91 -52.93 11.32 21.45 0.24 -52.69 16 22 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 C 0.13 5.93 5.66 86.37 0.49 6.42 16 27 O -0.39 -8.18 10.32 -148.98 -1.54 -9.71 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.71 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.88 8.06 -2.39 -0.02 0.86 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.16 7.85 -2.38 -0.02 1.14 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 36 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.11 2.36 7.69 -2.39 -0.02 2.34 16 38 H 0.11 2.52 7.68 -2.38 -0.02 2.50 16 39 H 0.11 2.43 5.93 -2.39 -0.01 2.42 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.06 3.30 6.05 -2.38 -0.01 3.29 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.05 2.56 7.00 -2.39 -0.02 2.54 16 Total: -1.00 -70.27 364.44 3.45 -66.82 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.92 Total: 15.68 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.28 Total: -13.78 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.19 Total: -78.11 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.58 Total: -36.93 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.27 3.45 -66.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.717 kcal (2) G-P(sol) polarization free energy of solvation -70.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds