Wall clock time and date at job start Tue Mar 31 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34219 * 117.00009 * 2 1 4 4 O 1.20832 * 120.00396 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00105 * 180.02562 * 3 2 1 6 6 H 1.09005 * 115.56691 * 325.72058 * 5 3 2 7 7 C 1.53055 * 117.50604 * 111.43740 * 5 3 2 8 8 C 1.52728 * 117.50816 * 179.97438 * 5 3 2 9 9 C 1.53230 * 117.83697 * 144.79153 * 8 5 3 10 10 C 1.53257 * 108.62492 * 163.02205 * 9 8 5 11 11 N 1.46814 * 109.45152 * 55.57040 * 10 9 8 12 12 C 1.46900 * 110.99930 * 170.80349 * 11 10 9 13 13 C 1.53005 * 109.47008 * 293.87261 * 12 11 10 14 14 H 1.08998 * 109.46794 * 57.48662 * 13 12 11 15 15 C 1.52999 * 109.47055 * 297.49063 * 13 12 11 16 16 C 1.52999 * 109.47152 * 177.48527 * 13 12 11 17 17 C 1.50698 * 109.47188 * 184.99787 * 16 13 12 18 18 H 1.08004 * 119.99915 * 0.02562 * 17 16 13 19 19 C 1.37874 * 119.99982 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47279 * 59.99601 * 21 19 17 23 23 H 1.48506 * 109.46911 * 299.99877 * 21 19 17 24 24 H 1.48495 * 109.47395 * 179.97438 * 21 19 17 25 25 C 1.46806 * 111.58346 * 295.17966 * 11 10 9 26 26 C 1.53218 * 117.84483 * 0.26618 * 8 5 3 27 27 H 1.08998 * 109.47154 * 299.99812 * 1 2 3 28 28 H 1.09004 * 109.47091 * 60.00184 * 1 2 3 29 29 H 1.08999 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.08993 * 117.50731 * 0.02562 * 7 5 3 31 31 H 1.08996 * 117.53243 * 214.92919 * 7 5 3 32 32 H 1.08995 * 109.60711 * 43.28128 * 9 8 5 33 33 H 1.08995 * 109.60924 * 282.75994 * 9 8 5 34 34 H 1.09003 * 109.47509 * 295.57174 * 10 9 8 35 35 H 1.09001 * 109.46915 * 175.56380 * 10 9 8 36 36 H 1.08998 * 109.47449 * 173.87226 * 12 11 10 37 37 H 1.08999 * 109.47062 * 53.86878 * 12 11 10 38 38 H 1.08999 * 109.46546 * 294.69179 * 15 13 12 39 39 H 1.08996 * 109.47353 * 54.68658 * 15 13 12 40 40 H 1.08999 * 109.47222 * 174.68993 * 15 13 12 41 41 H 1.09001 * 109.46491 * 65.00081 * 16 13 12 42 42 H 1.09002 * 109.47343 * 305.00049 * 16 13 12 43 43 H 0.96996 * 120.00428 * 0.02562 * 20 19 17 44 44 H 1.09002 * 109.47631 * 184.81060 * 25 11 10 45 45 H 1.09001 * 109.47781 * 304.82575 * 25 11 10 46 46 H 1.08997 * 109.60743 * 316.72365 * 26 8 5 47 47 H 1.09000 * 109.60818 * 77.23433 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0789 0.4879 0.5529 7 6 4.2458 1.8075 -1.2644 8 6 4.1999 2.6645 -0.0012 9 6 5.5043 2.8565 0.7795 10 6 6.1705 4.1537 0.3080 11 7 5.2285 5.2697 0.4583 12 6 5.8961 6.5572 0.2246 13 6 6.9285 6.8038 1.3265 14 1 7.6429 5.9808 1.3457 15 6 6.2190 6.8948 2.6790 16 6 7.6676 8.1143 1.0490 17 6 8.7664 8.2961 2.0642 18 1 8.9222 7.5512 2.8305 19 6 9.5726 9.4135 2.0147 20 7 9.3831 10.3203 1.0813 21 14 10.9351 9.6385 3.2727 22 1 11.8883 8.5037 3.1784 23 1 10.3480 9.6798 4.6362 24 1 11.6523 10.9105 3.0034 25 6 4.0627 5.1144 -0.4205 26 6 3.2640 3.8776 0.0052 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.6042 2.1013 -2.0951 31 1 5.2053 1.3717 -1.5424 32 1 6.1701 2.0142 0.5920 33 1 5.2863 2.9237 1.8453 34 1 6.4545 4.0563 -0.7398 35 1 7.0594 4.3449 0.9093 36 1 5.1560 7.3573 0.2345 37 1 6.3961 6.5367 -0.7437 38 1 5.5743 7.7736 2.6925 39 1 5.6165 5.9998 2.8343 40 1 6.9606 6.9759 3.4736 41 1 6.9680 8.9474 1.1175 42 1 8.0989 8.0834 0.0484 43 1 8.6759 10.2033 0.4279 44 1 3.4304 5.9990 -0.3451 45 1 4.3977 4.9938 -1.4507 46 1 2.4455 3.7118 -0.6952 47 1 2.8656 4.0270 1.0087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602469666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:03 Heat of formation + Delta-G solvation = -74.585360 kcal Electronic energy + Delta-G solvation = -24317.961796 eV Core-core repulsion = 20886.948614 eV Total energy + Delta-G solvation = -3431.013182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14269 -39.39202 -37.37384 -36.32917 -34.60822 -32.26132 -30.96538 -29.84798 -28.28955 -26.38348 -25.27364 -24.57322 -23.43990 -22.92221 -21.73652 -20.64002 -19.07095 -18.69932 -17.92382 -16.84160 -16.72760 -16.53389 -15.61354 -14.95732 -14.82752 -14.53865 -14.06270 -13.92097 -13.68236 -13.43356 -13.31022 -13.19036 -12.92155 -12.54618 -12.31271 -12.07872 -11.97641 -11.65279 -11.52482 -11.25396 -11.20477 -11.06783 -10.94188 -10.78440 -10.62650 -10.33261 -10.27200 -10.13705 -10.07172 -9.87568 -9.57466 -9.35750 -8.42648 -8.25948 -7.97201 -6.28631 -3.96369 1.80774 2.33407 3.40666 3.47212 3.49378 3.67840 4.14347 4.26392 4.36215 4.45806 4.60433 4.71562 4.74714 4.80168 4.82984 5.14355 5.17481 5.25899 5.36360 5.44952 5.47376 5.48528 5.55480 5.60293 5.66327 5.79196 5.87046 5.91783 6.01709 6.06178 6.10209 6.15670 6.24326 6.36803 6.41044 6.51355 6.67309 6.96221 7.12561 7.16711 7.40252 7.42131 7.48475 7.49847 7.65712 8.31582 8.54497 8.96715 9.74973 11.11777 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.040808 B = 0.002603 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.968569 B =10755.602422 C =10873.052219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.491 3.509 4 O -0.498 6.498 5 C -0.169 4.169 6 H 0.134 0.866 7 C -0.143 4.143 8 C -0.075 4.075 9 C -0.079 4.079 10 C 0.057 3.943 11 N -0.535 5.535 12 C 0.061 3.939 13 C -0.073 4.073 14 H 0.056 0.944 15 C -0.121 4.121 16 C 0.014 3.986 17 C -0.591 4.591 18 H 0.049 0.951 19 C 0.011 3.989 20 N -0.916 5.916 21 Si 1.067 2.933 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.284 1.284 25 C 0.056 3.944 26 C -0.076 4.076 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.038 0.962 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.006 0.994 42 H 0.002 0.998 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.028 0.972 46 H 0.085 0.915 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.141 -21.779 -4.216 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.335 3.665 4 O -0.385 6.385 5 C -0.188 4.188 6 H 0.152 0.848 7 C -0.180 4.180 8 C -0.076 4.076 9 C -0.117 4.117 10 C -0.071 4.071 11 N -0.260 5.260 12 C -0.066 4.066 13 C -0.092 4.092 14 H 0.075 0.925 15 C -0.178 4.178 16 C -0.024 4.024 17 C -0.630 4.630 18 H 0.067 0.933 19 C -0.192 4.192 20 N -0.553 5.553 21 Si 0.896 3.104 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.072 4.072 26 C -0.113 4.113 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.046 0.954 46 H 0.104 0.896 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.331 -20.465 -3.273 25.197 hybrid contribution -1.223 -1.132 -1.335 2.136 sum -15.555 -21.597 -4.609 27.011 Atomic orbital electron populations 1.23269 0.76265 1.03655 1.02631 1.86495 1.23396 1.33566 1.84111 1.22746 0.90540 0.81183 0.72064 1.90664 1.66995 1.35751 1.45116 1.21872 0.88026 1.01988 1.06904 0.84798 1.23180 1.01850 1.02086 0.90904 1.21742 0.97611 0.89581 0.98622 1.21291 0.92802 0.97390 1.00175 1.22085 0.95651 0.90009 0.99320 1.61769 1.08119 1.02370 1.53704 1.22290 0.96941 0.89608 0.97795 1.21084 0.94779 0.99691 0.93662 0.92527 1.21553 0.99287 0.99822 0.97157 1.19263 0.95026 0.91633 0.96471 1.22022 1.17001 1.08754 1.15200 0.93271 1.25819 1.00534 0.92875 0.99953 1.70774 1.33036 1.35711 1.15803 0.83572 0.75672 0.76069 0.75119 1.21557 1.21491 1.20900 1.22141 0.92797 0.98321 0.93930 1.21450 0.95686 0.90682 1.03516 0.91790 0.91911 0.88123 0.88189 0.87175 0.91277 0.90184 0.95168 0.89591 0.91402 0.95598 0.94295 0.93501 0.93044 0.97549 0.97971 0.92205 0.90851 0.95420 0.89635 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.41 10.56 -39.23 -0.41 -3.83 16 3 C 0.49 5.27 7.72 36.01 0.28 5.55 16 4 O -0.50 -6.42 12.89 -18.75 -0.24 -6.67 16 5 C -0.17 -1.55 6.04 -91.88 -0.55 -2.11 16 6 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 7 C -0.14 -1.24 9.62 -26.85 -0.26 -1.49 16 8 C -0.08 -0.79 2.02 -154.56 -0.31 -1.10 16 9 C -0.08 -0.85 5.87 -26.48 -0.16 -1.01 16 10 C 0.06 0.77 5.35 -3.74 -0.02 0.75 16 11 N -0.54 -8.03 3.83 -234.44 -0.90 -8.93 16 12 C 0.06 1.07 4.38 -3.82 -0.02 1.06 16 13 C -0.07 -1.52 2.24 -90.62 -0.20 -1.72 16 14 H 0.06 1.19 6.28 -51.93 -0.33 0.86 16 15 C -0.12 -2.41 8.85 37.16 0.33 -2.09 16 16 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 17 C -0.59 -16.88 8.47 -34.44 -0.29 -17.17 16 18 H 0.05 1.38 7.06 -52.48 -0.37 1.01 16 19 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 20 N -0.92 -28.52 13.65 55.43 0.76 -27.76 16 21 Si 1.07 25.69 29.90 -169.99 -5.08 20.60 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.06 0.75 5.49 -3.74 -0.02 0.73 16 26 C -0.08 -0.93 4.32 -26.49 -0.11 -1.05 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.09 1.26 6.07 -51.93 -0.32 0.95 16 36 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 37 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.84 7.53 -51.93 -0.39 0.45 16 40 H 0.05 1.09 7.11 -51.93 -0.37 0.72 16 41 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 42 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 43 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 44 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 45 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.09 1.08 6.01 -51.93 -0.31 0.77 16 47 H 0.08 1.05 8.12 -51.93 -0.42 0.62 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -32.17 367.14 -9.14 -41.31 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -8.32 Total: -2.37 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -0.48 Total: -17.88 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.14 Total: -36.70 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.66 Total: -10.49 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.17 -9.14 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.278 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds