Wall clock time and date at job start Tue Mar 31 2020 07:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34219 * 117.00009 * 2 1 4 4 O 1.20832 * 120.00396 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00105 * 180.02562 * 3 2 1 6 6 H 1.09005 * 115.56691 * 325.72058 * 5 3 2 7 7 C 1.53055 * 117.50604 * 111.43740 * 5 3 2 8 8 C 1.52728 * 117.50816 * 179.97438 * 5 3 2 9 9 C 1.53230 * 117.83697 * 144.79153 * 8 5 3 10 10 C 1.53257 * 108.62492 * 163.02205 * 9 8 5 11 11 N 1.46814 * 109.45152 * 55.57040 * 10 9 8 12 12 C 1.46900 * 110.99930 * 170.80349 * 11 10 9 13 13 C 1.53005 * 109.47008 * 293.87261 * 12 11 10 14 14 H 1.08998 * 109.46794 * 57.48662 * 13 12 11 15 15 C 1.52999 * 109.47055 * 297.49063 * 13 12 11 16 16 C 1.52999 * 109.47152 * 177.48527 * 13 12 11 17 17 C 1.50698 * 109.47188 * 184.99787 * 16 13 12 18 18 H 1.08004 * 119.99915 * 0.02562 * 17 16 13 19 19 C 1.37874 * 119.99982 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47279 * 59.99601 * 21 19 17 23 23 H 1.48506 * 109.46911 * 299.99877 * 21 19 17 24 24 H 1.48495 * 109.47395 * 179.97438 * 21 19 17 25 25 C 1.46806 * 111.58346 * 295.17966 * 11 10 9 26 26 C 1.53218 * 117.84483 * 0.26618 * 8 5 3 27 27 H 1.08998 * 109.47154 * 299.99812 * 1 2 3 28 28 H 1.09004 * 109.47091 * 60.00184 * 1 2 3 29 29 H 1.08999 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.08993 * 117.50731 * 0.02562 * 7 5 3 31 31 H 1.08996 * 117.53243 * 214.92919 * 7 5 3 32 32 H 1.08995 * 109.60711 * 43.28128 * 9 8 5 33 33 H 1.08995 * 109.60924 * 282.75994 * 9 8 5 34 34 H 1.09003 * 109.47509 * 295.57174 * 10 9 8 35 35 H 1.09001 * 109.46915 * 175.56380 * 10 9 8 36 36 H 1.08998 * 109.47449 * 173.87226 * 12 11 10 37 37 H 1.08999 * 109.47062 * 53.86878 * 12 11 10 38 38 H 1.08999 * 109.46546 * 294.69179 * 15 13 12 39 39 H 1.08996 * 109.47353 * 54.68658 * 15 13 12 40 40 H 1.08999 * 109.47222 * 174.68993 * 15 13 12 41 41 H 1.09001 * 109.46491 * 65.00081 * 16 13 12 42 42 H 1.09002 * 109.47343 * 305.00049 * 16 13 12 43 43 H 0.96996 * 120.00428 * 0.02562 * 20 19 17 44 44 H 1.09002 * 109.47631 * 184.81060 * 25 11 10 45 45 H 1.09001 * 109.47781 * 304.82575 * 25 11 10 46 46 H 1.08997 * 109.60743 * 316.72365 * 26 8 5 47 47 H 1.09000 * 109.60818 * 77.23433 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0789 0.4879 0.5529 7 6 4.2458 1.8075 -1.2644 8 6 4.1999 2.6645 -0.0012 9 6 5.5043 2.8565 0.7795 10 6 6.1705 4.1537 0.3080 11 7 5.2285 5.2697 0.4583 12 6 5.8961 6.5572 0.2246 13 6 6.9285 6.8038 1.3265 14 1 7.6429 5.9808 1.3457 15 6 6.2190 6.8948 2.6790 16 6 7.6676 8.1143 1.0490 17 6 8.7664 8.2961 2.0642 18 1 8.9222 7.5512 2.8305 19 6 9.5726 9.4135 2.0147 20 7 9.3831 10.3203 1.0813 21 14 10.9351 9.6385 3.2727 22 1 11.8883 8.5037 3.1784 23 1 10.3480 9.6798 4.6362 24 1 11.6523 10.9105 3.0034 25 6 4.0627 5.1144 -0.4205 26 6 3.2640 3.8776 0.0052 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.6042 2.1013 -2.0951 31 1 5.2053 1.3717 -1.5424 32 1 6.1701 2.0142 0.5920 33 1 5.2863 2.9237 1.8453 34 1 6.4545 4.0563 -0.7398 35 1 7.0594 4.3449 0.9093 36 1 5.1560 7.3573 0.2345 37 1 6.3961 6.5367 -0.7437 38 1 5.5743 7.7736 2.6925 39 1 5.6165 5.9998 2.8343 40 1 6.9606 6.9759 3.4736 41 1 6.9680 8.9474 1.1175 42 1 8.0989 8.0834 0.0484 43 1 8.6759 10.2033 0.4279 44 1 3.4304 5.9990 -0.3451 45 1 4.3977 4.9938 -1.4507 46 1 2.4455 3.7118 -0.6952 47 1 2.8656 4.0270 1.0087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602469666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:02 Heat of formation + Delta-G solvation = -92.268219 kcal Electronic energy + Delta-G solvation = -24318.728582 eV Core-core repulsion = 20886.948614 eV Total energy + Delta-G solvation = -3431.779968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94373 -40.35020 -38.50688 -37.28379 -36.22979 -34.20202 -31.95627 -31.03018 -28.95904 -28.36591 -26.75198 -25.31145 -24.80340 -24.38577 -22.97261 -21.44279 -20.68993 -19.64492 -18.89156 -18.69085 -17.54168 -17.33580 -16.71413 -16.22605 -16.07331 -15.66161 -15.51975 -15.32077 -14.94716 -14.78059 -14.37097 -14.14540 -14.04027 -13.62045 -13.49843 -13.42496 -13.15977 -12.97172 -12.87827 -12.67982 -12.60930 -12.41332 -12.13293 -11.95378 -11.91597 -11.80174 -11.73800 -11.47776 -11.23827 -11.12593 -10.94841 -10.80023 -10.50721 -10.47752 -9.20083 -8.64030 -6.32881 1.02041 1.53080 1.61925 1.66764 1.80699 2.58769 2.65584 2.96728 3.19942 3.48963 3.60690 3.73081 3.87796 3.93363 4.05185 4.19382 4.27536 4.29000 4.31042 4.39420 4.43440 4.50528 4.53531 4.60328 4.68348 4.76360 4.79968 4.81548 4.81916 4.87694 4.94714 5.00279 5.07462 5.08609 5.14294 5.25564 5.32289 5.34752 5.40278 5.48468 5.49372 5.66538 6.04116 6.15602 6.22736 6.27167 6.63629 6.72419 7.48119 8.76478 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.040808 B = 0.002603 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.968569 B =10755.602422 C =10873.052219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.488 3.512 4 O -0.527 6.527 5 C -0.161 4.161 6 H 0.157 0.843 7 C -0.128 4.128 8 C -0.094 4.094 9 C -0.069 4.069 10 C 0.054 3.946 11 N -0.539 5.539 12 C 0.073 3.927 13 C -0.064 4.064 14 H 0.057 0.943 15 C -0.110 4.110 16 C 0.016 3.984 17 C -0.602 4.602 18 H 0.053 0.947 19 C -0.045 4.045 20 N -0.942 5.942 21 Si 1.116 2.884 22 H -0.268 1.268 23 H -0.270 1.270 24 H -0.286 1.286 25 C 0.058 3.942 26 C -0.065 4.065 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.036 0.964 41 H -0.016 1.016 42 H -0.019 1.019 43 H 0.253 0.747 44 H 0.067 0.933 45 H 0.033 0.967 46 H 0.082 0.918 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.981 -24.463 -3.760 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.333 3.667 4 O -0.417 6.417 5 C -0.180 4.180 6 H 0.175 0.825 7 C -0.165 4.165 8 C -0.094 4.094 9 C -0.106 4.106 10 C -0.073 4.073 11 N -0.263 5.263 12 C -0.055 4.055 13 C -0.082 4.082 14 H 0.075 0.925 15 C -0.167 4.167 16 C -0.021 4.021 17 C -0.640 4.640 18 H 0.071 0.929 19 C -0.241 4.241 20 N -0.580 5.580 21 Si 0.937 3.063 22 H -0.193 1.193 23 H -0.195 1.195 24 H -0.211 1.211 25 C -0.070 4.070 26 C -0.103 4.103 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.002 0.998 42 H 0.000 1.000 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.051 0.949 46 H 0.100 0.900 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.198 -23.192 -2.823 27.339 hybrid contribution -1.374 -0.339 -1.518 2.075 sum -15.572 -23.532 -4.340 28.549 Atomic orbital electron populations 1.23532 0.74831 1.05651 1.02419 1.86486 1.24865 1.32848 1.83660 1.23093 0.91235 0.81102 0.71283 1.90656 1.67762 1.36709 1.46569 1.21960 0.87220 1.01355 1.07475 0.82533 1.23289 1.02678 1.00393 0.90108 1.21619 0.97387 0.89621 1.00784 1.21219 0.93169 0.96671 0.99590 1.22154 0.95101 0.90644 0.99437 1.61737 1.08618 1.01594 1.54364 1.21997 0.96038 0.91302 0.96150 1.20904 0.95300 0.96766 0.95279 0.92475 1.21440 0.98802 1.00501 0.95975 1.19200 0.94483 0.93633 0.94810 1.22413 1.17403 1.08674 1.15482 0.92914 1.27422 1.02957 0.92690 1.01058 1.70914 1.33397 1.36909 1.16825 0.82952 0.73307 0.76550 0.73457 1.19286 1.19478 1.21141 1.22155 0.92066 0.98880 0.93865 1.21265 0.95721 0.91120 1.02145 0.92169 0.92021 0.85067 0.88370 0.84867 0.88462 0.90950 0.94768 0.90990 0.91959 0.96221 0.95115 0.91250 0.94495 0.99771 1.00041 0.93755 0.91406 0.94922 0.89994 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.19 10.56 -51.31 -0.54 -6.73 16 3 C 0.49 9.68 7.72 71.24 0.55 10.23 16 4 O -0.53 -13.27 12.89 21.95 0.28 -12.98 16 5 C -0.16 -2.52 6.04 -11.61 -0.07 -2.59 16 6 H 0.16 1.75 8.14 -2.38 -0.02 1.73 16 7 C -0.13 -1.81 9.62 30.52 0.29 -1.52 16 8 C -0.09 -1.76 2.02 -52.22 -0.11 -1.87 16 9 C -0.07 -1.31 5.87 30.76 0.18 -1.13 16 10 C 0.05 1.38 5.35 86.41 0.46 1.84 16 11 N -0.54 -15.81 3.83 -895.64 -3.43 -19.24 16 12 C 0.07 2.60 4.38 86.30 0.38 2.98 16 13 C -0.06 -2.66 2.24 -10.79 -0.02 -2.69 16 14 H 0.06 2.39 6.28 -2.39 -0.01 2.38 16 15 C -0.11 -4.37 8.85 71.98 0.64 -3.73 16 16 C 0.02 0.86 3.76 29.85 0.11 0.98 16 17 C -0.60 -34.74 8.47 25.60 0.22 -34.52 16 18 H 0.05 2.95 7.06 -2.91 -0.02 2.93 16 19 C -0.04 -2.65 5.46 84.65 0.46 -2.19 16 20 N -0.94 -59.92 13.65 21.45 0.29 -59.63 16 21 Si 1.12 51.19 29.90 68.60 2.05 53.24 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 C 0.06 1.51 5.49 86.41 0.47 1.99 16 26 C -0.06 -1.54 4.32 30.75 0.13 -1.41 16 27 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 28 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 29 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.03 0.84 8.12 -2.39 -0.02 0.83 16 35 H 0.07 2.03 6.07 -2.39 -0.01 2.01 16 36 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 37 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 2.43 7.53 -2.39 -0.02 2.41 16 40 H 0.04 1.54 7.11 -2.39 -0.02 1.53 16 41 H -0.02 -0.92 8.01 -2.39 -0.02 -0.93 16 42 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 43 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 44 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 45 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 46 H 0.08 2.03 6.01 -2.39 -0.01 2.01 16 47 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 Total: -1.00 -70.41 367.14 4.57 -65.84 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.02 Total: 11.61 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.90 Total: -32.11 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -3.14 Total: -78.87 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.26 Total: -19.71 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -70.41 4.57 -65.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.425 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds