Wall clock time and date at job start Tue Mar 31 2020 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00191 * 2 1 4 4 O 1.20825 * 119.99712 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00247 * 179.97438 * 3 2 1 6 6 H 1.09004 * 115.56415 * 34.27841 * 5 3 2 7 7 C 1.53052 * 117.50317 * 248.55891 * 5 3 2 8 8 C 1.52728 * 117.50479 * 179.97438 * 5 3 2 9 9 C 1.53228 * 117.83500 * 359.74193 * 8 5 3 10 10 C 1.53257 * 108.62652 * 163.02034 * 9 8 5 11 11 N 1.46807 * 109.44989 * 55.56816 * 10 9 8 12 12 C 1.46902 * 110.99840 * 170.80340 * 11 10 9 13 13 C 1.53000 * 109.47335 * 176.42074 * 12 11 10 14 14 H 1.09006 * 109.47121 * 301.74955 * 13 12 11 15 15 C 1.52993 * 109.47565 * 181.74433 * 13 12 11 16 16 C 1.53001 * 109.46850 * 61.74228 * 13 12 11 17 17 C 1.50704 * 109.47022 * 185.00036 * 16 13 12 18 18 H 1.07996 * 120.00064 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99541 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00516 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99652 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47199 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47439 * 119.99880 * 21 19 17 24 24 H 1.48496 * 109.46907 * 239.99889 * 21 19 17 25 25 C 1.46813 * 111.58646 * 295.17881 * 11 10 9 26 26 C 1.53211 * 117.84627 * 215.21258 * 8 5 3 27 27 H 1.08997 * 109.47206 * 300.00602 * 1 2 3 28 28 H 1.09005 * 109.46454 * 60.00571 * 1 2 3 29 29 H 1.09003 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.08998 * 117.50703 * 145.05765 * 7 5 3 31 31 H 1.08995 * 117.53303 * 359.97438 * 7 5 3 32 32 H 1.09000 * 109.61035 * 43.28394 * 9 8 5 33 33 H 1.08999 * 109.75291 * 282.84567 * 9 8 5 34 34 H 1.09003 * 109.47357 * 295.57548 * 10 9 8 35 35 H 1.09003 * 109.46985 * 175.56183 * 10 9 8 36 36 H 1.09004 * 109.47176 * 56.42153 * 12 11 10 37 37 H 1.08993 * 109.47161 * 296.42233 * 12 11 10 38 38 H 1.09006 * 109.47079 * 294.96223 * 15 13 12 39 39 H 1.09004 * 109.47362 * 54.95812 * 15 13 12 40 40 H 1.09002 * 109.47385 * 174.96059 * 15 13 12 41 41 H 1.08999 * 109.47484 * 305.00287 * 16 13 12 42 42 H 1.08997 * 109.47051 * 65.00389 * 16 13 12 43 43 H 0.97001 * 119.99740 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.48095 * 184.80660 * 25 11 10 45 45 H 1.08998 * 109.47604 * 304.83305 * 25 11 10 46 46 H 1.08996 * 109.61200 * 316.72273 * 26 8 5 47 47 H 1.09006 * 109.60828 * 77.23396 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0789 0.4879 -0.5529 7 6 4.2458 1.8076 1.2643 8 6 4.1999 2.6646 -0.0001 9 6 3.2637 3.8776 -0.0073 10 6 4.0623 5.1148 0.4173 11 7 5.2280 5.2695 -0.4616 12 6 5.8954 6.5573 -0.2289 13 6 7.1528 6.6442 -1.0963 14 1 7.8170 5.8134 -0.8576 15 6 7.8713 7.9667 -0.8220 16 6 6.7594 6.5743 -2.5732 17 6 8.0033 6.5361 -3.4231 18 1 8.9770 6.5589 -2.9566 19 6 7.8981 6.4720 -4.7964 20 7 6.7123 6.4437 -5.3646 21 14 9.4399 6.4239 -5.8500 22 1 10.6390 6.4661 -4.9748 23 1 9.4542 5.1729 -6.6498 24 1 9.4524 7.5951 -6.7627 25 6 6.1703 4.1538 -0.3104 26 6 5.5041 2.8562 -0.7808 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 5.2052 1.3714 1.5422 31 1 3.6046 2.1016 2.0953 32 1 2.4453 3.7122 0.6934 33 1 2.8626 4.0273 -1.0097 34 1 4.3973 4.9951 1.4476 35 1 3.4297 5.9992 0.3411 36 1 6.1727 6.6382 0.8221 37 1 5.2175 7.3701 -0.4894 38 1 7.2416 8.7960 -1.1442 39 1 8.0721 8.0566 0.2457 40 1 8.8122 7.9899 -1.3718 41 1 6.1706 5.6743 -2.7502 42 1 6.1682 7.4522 -2.8336 43 1 6.6384 6.3982 -6.3307 44 1 7.0591 4.3447 -0.9117 45 1 6.4541 4.0573 0.7375 46 1 6.1702 2.0141 -0.5927 47 1 5.2861 2.9224 -1.8467 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602469667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:06 Heat of formation + Delta-G solvation = -65.987386 kcal Electronic energy + Delta-G solvation = -24708.308825 eV Core-core repulsion = 21277.668479 eV Total energy + Delta-G solvation = -3430.640345 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96451 -39.21857 -37.25966 -36.16755 -34.26655 -32.10609 -30.71543 -29.74682 -28.15399 -26.90666 -24.96410 -24.40535 -23.41477 -22.63329 -21.70828 -20.48585 -18.88043 -18.33294 -17.74274 -16.61800 -16.41940 -16.27925 -15.61232 -14.76555 -14.64494 -14.39836 -14.22362 -13.84418 -13.61986 -13.29740 -13.04939 -12.93187 -12.53356 -12.31974 -12.13765 -12.02149 -11.84702 -11.52048 -11.36349 -11.28962 -11.03629 -10.86361 -10.84783 -10.81587 -10.54309 -10.32450 -10.24695 -10.06758 -9.87005 -9.68462 -9.45735 -9.02405 -8.77451 -8.22197 -7.68410 -5.86535 -3.87402 1.97988 2.49918 3.36468 3.44341 3.47413 3.60158 4.36042 4.45804 4.55019 4.55756 4.65595 4.87713 4.90502 4.96357 5.04656 5.28253 5.37549 5.48540 5.49489 5.51173 5.65081 5.67377 5.72999 5.79812 5.82922 5.93267 6.01471 6.09123 6.13425 6.21729 6.31100 6.33722 6.36532 6.48613 6.53490 6.57969 6.65099 7.01600 7.08451 7.32150 7.63564 7.66432 7.68177 7.88777 8.08942 8.23358 8.58864 9.21196 9.74929 11.24280 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.003521 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.538453 B = 7949.571047 C = 8713.493302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.492 3.508 4 O -0.498 6.498 5 C -0.170 4.170 6 H 0.134 0.866 7 C -0.145 4.145 8 C -0.072 4.072 9 C -0.077 4.077 10 C 0.059 3.941 11 N -0.527 5.527 12 C 0.066 3.934 13 C -0.091 4.091 14 H 0.058 0.942 15 C -0.131 4.131 16 C 0.035 3.965 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.883 3.117 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.057 3.943 26 C -0.081 4.081 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.014 0.986 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.027 0.973 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.010 0.990 43 H 0.257 0.743 44 H 0.097 0.903 45 H 0.023 0.977 46 H 0.067 0.933 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 -11.487 14.698 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.335 3.665 4 O -0.385 6.385 5 C -0.189 4.189 6 H 0.152 0.848 7 C -0.182 4.182 8 C -0.072 4.072 9 C -0.114 4.114 10 C -0.070 4.070 11 N -0.251 5.251 12 C -0.061 4.061 13 C -0.110 4.110 14 H 0.076 0.924 15 C -0.189 4.189 16 C -0.002 4.002 17 C -0.552 4.552 18 H 0.070 0.930 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.712 3.288 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.070 4.070 26 C -0.118 4.118 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.029 0.971 43 H 0.067 0.933 44 H 0.115 0.885 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.002 -11.198 14.054 20.098 hybrid contribution 0.806 -0.118 0.052 0.816 sum -8.196 -11.316 14.106 19.855 Atomic orbital electron populations 1.23254 0.76423 1.03540 1.02596 1.86498 1.23281 1.33663 1.84182 1.22768 0.90569 0.81132 0.72020 1.90658 1.66986 1.35748 1.45095 1.21875 0.87921 1.02293 1.06775 0.84801 1.23176 1.01712 1.02429 0.90878 1.21777 0.97759 0.89453 0.98197 1.21440 0.95572 0.90716 1.03666 1.22115 0.93041 0.98302 0.93504 1.61661 1.07957 1.02105 1.53394 1.22213 0.96950 0.90662 0.96315 1.21378 0.93666 0.96608 0.99313 0.92406 1.21687 1.01249 0.97805 0.98178 1.19066 0.96076 0.97993 0.87065 1.21358 0.93056 1.49565 0.91239 0.93005 1.24987 0.95400 0.95831 0.98167 1.69993 1.22119 1.51255 1.09880 0.86683 0.84018 0.77446 0.80695 1.19932 1.21206 1.21259 1.22146 0.96321 0.89931 0.98641 1.21304 0.92475 0.97302 1.00734 0.92001 0.91777 0.88225 0.87312 0.88364 0.89850 0.90346 0.95807 0.91046 0.96742 0.91356 0.93473 0.95370 0.92064 0.94802 0.97133 0.93341 0.88484 0.95891 0.91470 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.99 10.57 -39.25 -0.41 -4.40 16 3 C 0.49 6.16 7.72 36.01 0.28 6.44 16 4 O -0.50 -7.31 12.89 -18.75 -0.24 -7.55 16 5 C -0.17 -1.91 6.03 -91.88 -0.55 -2.46 16 6 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 7 C -0.14 -1.47 9.63 -26.80 -0.26 -1.72 16 8 C -0.07 -0.91 2.02 -154.52 -0.31 -1.22 16 9 C -0.08 -1.10 4.32 -26.48 -0.11 -1.21 16 10 C 0.06 0.86 5.49 -3.74 -0.02 0.84 16 11 N -0.53 -9.04 3.92 -234.45 -0.92 -9.96 16 12 C 0.07 1.16 4.53 -3.82 -0.02 1.15 16 13 C -0.09 -1.84 1.85 -90.62 -0.17 -2.01 16 14 H 0.06 1.17 6.01 -51.93 -0.31 0.85 16 15 C -0.13 -2.47 8.92 37.15 0.33 -2.14 16 16 C 0.04 0.90 4.31 -27.88 -0.12 0.78 16 17 C -0.51 -14.32 8.47 -34.44 -0.29 -14.61 16 18 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 21 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.06 0.90 5.06 -3.74 -0.02 0.88 16 26 C -0.08 -1.12 5.87 -26.49 -0.16 -1.28 16 27 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.18 6.01 -51.93 -0.31 0.87 16 33 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 34 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 35 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.22 7.10 -51.93 -0.37 0.85 16 41 H 0.03 0.93 7.43 -51.93 -0.39 0.55 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.10 1.73 5.56 -51.93 -0.29 1.44 16 45 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 46 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 47 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -31.53 367.43 -9.12 -40.65 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -8.35 Total: -0.99 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.45 Total: -13.69 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.18 Total: -36.33 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.66 Total: -11.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.53 -9.12 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.333 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds