Wall clock time and date at job start Tue Mar 31 2020 07:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00191 * 2 1 4 4 O 1.20825 * 119.99712 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00247 * 179.97438 * 3 2 1 6 6 H 1.09004 * 115.56415 * 34.27841 * 5 3 2 7 7 C 1.53052 * 117.50317 * 248.55891 * 5 3 2 8 8 C 1.52728 * 117.50479 * 179.97438 * 5 3 2 9 9 C 1.53228 * 117.83500 * 359.74193 * 8 5 3 10 10 C 1.53257 * 108.62652 * 163.02034 * 9 8 5 11 11 N 1.46807 * 109.44989 * 55.56816 * 10 9 8 12 12 C 1.46902 * 110.99840 * 170.80340 * 11 10 9 13 13 C 1.53000 * 109.47335 * 176.42074 * 12 11 10 14 14 H 1.09006 * 109.47121 * 301.74955 * 13 12 11 15 15 C 1.52993 * 109.47565 * 181.74433 * 13 12 11 16 16 C 1.53001 * 109.46850 * 61.74228 * 13 12 11 17 17 C 1.50704 * 109.47022 * 185.00036 * 16 13 12 18 18 H 1.07996 * 120.00064 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99541 * 180.02562 * 17 16 13 20 20 N 1.31513 * 120.00516 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99652 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47199 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47439 * 119.99880 * 21 19 17 24 24 H 1.48496 * 109.46907 * 239.99889 * 21 19 17 25 25 C 1.46813 * 111.58646 * 295.17881 * 11 10 9 26 26 C 1.53211 * 117.84627 * 215.21258 * 8 5 3 27 27 H 1.08997 * 109.47206 * 300.00602 * 1 2 3 28 28 H 1.09005 * 109.46454 * 60.00571 * 1 2 3 29 29 H 1.09003 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.08998 * 117.50703 * 145.05765 * 7 5 3 31 31 H 1.08995 * 117.53303 * 359.97438 * 7 5 3 32 32 H 1.09000 * 109.61035 * 43.28394 * 9 8 5 33 33 H 1.08999 * 109.75291 * 282.84567 * 9 8 5 34 34 H 1.09003 * 109.47357 * 295.57548 * 10 9 8 35 35 H 1.09003 * 109.46985 * 175.56183 * 10 9 8 36 36 H 1.09004 * 109.47176 * 56.42153 * 12 11 10 37 37 H 1.08993 * 109.47161 * 296.42233 * 12 11 10 38 38 H 1.09006 * 109.47079 * 294.96223 * 15 13 12 39 39 H 1.09004 * 109.47362 * 54.95812 * 15 13 12 40 40 H 1.09002 * 109.47385 * 174.96059 * 15 13 12 41 41 H 1.08999 * 109.47484 * 305.00287 * 16 13 12 42 42 H 1.08997 * 109.47051 * 65.00389 * 16 13 12 43 43 H 0.97001 * 119.99740 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.48095 * 184.80660 * 25 11 10 45 45 H 1.08998 * 109.47604 * 304.83305 * 25 11 10 46 46 H 1.08996 * 109.61200 * 316.72273 * 26 8 5 47 47 H 1.09006 * 109.60828 * 77.23396 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0789 0.4879 -0.5529 7 6 4.2458 1.8076 1.2643 8 6 4.1999 2.6646 -0.0001 9 6 3.2637 3.8776 -0.0073 10 6 4.0623 5.1148 0.4173 11 7 5.2280 5.2695 -0.4616 12 6 5.8954 6.5573 -0.2289 13 6 7.1528 6.6442 -1.0963 14 1 7.8170 5.8134 -0.8576 15 6 7.8713 7.9667 -0.8220 16 6 6.7594 6.5743 -2.5732 17 6 8.0033 6.5361 -3.4231 18 1 8.9770 6.5589 -2.9566 19 6 7.8981 6.4720 -4.7964 20 7 6.7123 6.4437 -5.3646 21 14 9.4399 6.4239 -5.8500 22 1 10.6390 6.4661 -4.9748 23 1 9.4542 5.1729 -6.6498 24 1 9.4524 7.5951 -6.7627 25 6 6.1703 4.1538 -0.3104 26 6 5.5041 2.8562 -0.7808 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 5.2052 1.3714 1.5422 31 1 3.6046 2.1016 2.0953 32 1 2.4453 3.7122 0.6934 33 1 2.8626 4.0273 -1.0097 34 1 4.3973 4.9951 1.4476 35 1 3.4297 5.9992 0.3411 36 1 6.1727 6.6382 0.8221 37 1 5.2175 7.3701 -0.4894 38 1 7.2416 8.7960 -1.1442 39 1 8.0721 8.0566 0.2457 40 1 8.8122 7.9899 -1.3718 41 1 6.1706 5.6743 -2.7502 42 1 6.1682 7.4522 -2.8336 43 1 6.6384 6.3982 -6.3307 44 1 7.0591 4.3447 -0.9117 45 1 6.4541 4.0573 0.7375 46 1 6.1702 2.0141 -0.5927 47 1 5.2861 2.9224 -1.8467 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602469667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:05 Heat of formation + Delta-G solvation = -83.583178 kcal Electronic energy + Delta-G solvation = -24709.071836 eV Core-core repulsion = 21277.668479 eV Total energy + Delta-G solvation = -3431.403356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92295 -40.31952 -38.45835 -37.22661 -35.86067 -34.11105 -31.88485 -31.00858 -29.05419 -28.77347 -26.36910 -25.31771 -24.89059 -24.20265 -22.95613 -21.43935 -20.36826 -19.54212 -18.67750 -18.43575 -17.53796 -17.33960 -16.81867 -16.56018 -15.91693 -15.72544 -15.35486 -15.18998 -14.77953 -14.38622 -14.30086 -14.12709 -14.02623 -13.72196 -13.33367 -13.29440 -13.05456 -12.90243 -12.78468 -12.73861 -12.58720 -12.51816 -12.20633 -12.08855 -11.92080 -11.78835 -11.71211 -11.30392 -11.09390 -11.05685 -10.88562 -10.79252 -10.56563 -10.45164 -8.96106 -8.08652 -6.17369 1.03497 1.41127 1.41665 1.54009 1.68280 2.46274 2.68754 3.11835 3.24378 3.51502 3.64536 3.77076 3.94150 4.03108 4.13229 4.28410 4.30191 4.31393 4.34889 4.47599 4.55833 4.57742 4.58456 4.65562 4.68597 4.80126 4.83105 4.89198 4.91359 4.93855 4.99024 5.06157 5.14960 5.21785 5.28558 5.34493 5.38747 5.48777 5.49742 5.54089 5.70159 5.96946 6.06921 6.35115 6.38912 6.44474 6.73564 7.02304 7.50033 9.02889 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.003521 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.538453 B = 7949.571047 C = 8713.493302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.489 3.511 4 O -0.527 6.527 5 C -0.170 4.170 6 H 0.151 0.849 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.067 4.067 10 C 0.063 3.937 11 N -0.555 5.555 12 C 0.074 3.926 13 C -0.083 4.083 14 H 0.062 0.938 15 C -0.127 4.127 16 C 0.048 3.952 17 C -0.524 4.524 18 H 0.058 0.942 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.955 3.045 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.284 1.284 25 C 0.060 3.940 26 C -0.074 4.074 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.003 0.997 42 H -0.027 1.027 43 H 0.258 0.742 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.096 0.904 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 -12.980 16.838 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.334 3.666 4 O -0.417 6.417 5 C -0.189 4.189 6 H 0.169 0.831 7 C -0.151 4.151 8 C -0.094 4.094 9 C -0.105 4.105 10 C -0.065 4.065 11 N -0.280 5.280 12 C -0.053 4.053 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.184 4.184 16 C 0.011 3.989 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.781 3.219 22 H -0.185 1.185 23 H -0.207 1.207 24 H -0.210 1.210 25 C -0.067 4.067 26 C -0.112 4.112 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.022 0.978 42 H -0.009 1.009 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.114 0.886 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.642 -12.707 16.211 21.970 hybrid contribution 0.287 0.317 -0.627 0.759 sum -7.355 -12.390 15.584 21.224 Atomic orbital electron populations 1.23537 0.74837 1.05660 1.02408 1.86487 1.24882 1.32773 1.83693 1.23061 0.91168 0.81120 0.71260 1.90648 1.67727 1.36740 1.46597 1.21980 0.87354 1.01468 1.08068 0.83097 1.23305 1.02645 0.99490 0.89686 1.21579 0.97092 0.89660 1.01097 1.21263 0.95955 0.91775 1.01488 1.22100 0.92078 0.98305 0.94001 1.61594 1.09034 1.02360 1.55053 1.22037 0.95385 0.90874 0.97032 1.21225 0.95260 0.97753 0.95957 0.91931 1.21621 0.99990 0.96460 1.00367 1.18842 0.94493 0.94667 0.90903 1.21759 0.93936 1.48698 0.91857 0.92354 1.25904 0.98674 0.95515 0.99825 1.70148 1.24663 1.52552 1.10212 0.85550 0.80195 0.77435 0.78764 1.18459 1.20728 1.20968 1.22089 0.95161 0.90103 0.99391 1.21205 0.93715 0.97544 0.98694 0.91753 0.92474 0.84976 0.84576 0.87691 0.89566 0.94019 0.93779 0.91586 0.93987 0.92545 0.94260 0.91664 0.93505 0.97813 1.00857 0.93322 0.91189 0.93560 0.88590 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -7.53 10.57 -51.38 -0.54 -8.07 16 3 C 0.49 11.85 7.72 71.24 0.55 12.40 16 4 O -0.53 -15.59 12.89 21.97 0.28 -15.31 16 5 C -0.17 -3.51 6.03 -11.61 -0.07 -3.58 16 6 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 7 C -0.11 -1.93 9.63 30.55 0.29 -1.64 16 8 C -0.09 -2.28 2.02 -52.19 -0.11 -2.39 16 9 C -0.07 -1.96 4.32 30.76 0.13 -1.83 16 10 C 0.06 1.83 5.49 86.41 0.47 2.30 16 11 N -0.56 -19.22 3.92 -895.66 -3.51 -22.74 16 12 C 0.07 2.59 4.53 86.30 0.39 2.98 16 13 C -0.08 -3.38 1.85 -10.80 -0.02 -3.40 16 14 H 0.06 2.49 6.01 -2.38 -0.01 2.48 16 15 C -0.13 -4.65 8.92 71.98 0.64 -4.01 16 16 C 0.05 2.57 4.31 29.85 0.13 2.69 16 17 C -0.52 -29.84 8.47 25.60 0.22 -29.62 16 18 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 19 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 20 N -0.93 -58.70 13.29 21.45 0.28 -58.41 16 21 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 25 C 0.06 1.84 5.06 86.41 0.44 2.28 16 26 C -0.07 -2.02 5.87 30.75 0.18 -1.84 16 27 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 28 H 0.06 0.93 8.13 -2.38 -0.02 0.91 16 29 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.09 2.45 6.01 -2.39 -0.01 2.43 16 33 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 34 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 36 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.05 1.83 7.10 -2.39 -0.02 1.81 16 41 H 0.00 0.20 7.43 -2.39 -0.02 0.19 16 42 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 43 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.07 2.51 5.56 -2.39 -0.01 2.50 16 45 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 46 H 0.10 2.02 8.08 -2.39 -0.02 2.00 16 47 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -71.09 367.43 4.37 -66.72 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.92 Total: 14.30 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.91 Total: -23.69 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -3.23 Total: -81.15 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.26 Total: -23.38 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -71.09 4.37 -66.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.868 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds