Wall clock time and date at job start Tue Mar 31 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99912 * 2 1 4 4 O 1.20821 * 119.99858 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00224 * 180.02562 * 3 2 1 6 6 H 1.09000 * 115.57466 * 60.82368 * 5 3 2 7 7 C 1.53050 * 117.50578 * 206.56317 * 5 3 2 8 8 C 1.52730 * 59.94483 * 107.46431 * 7 5 3 9 9 C 1.53223 * 117.84308 * 252.25547 * 8 7 5 10 10 C 1.53259 * 108.62242 * 162.98856 * 9 8 7 11 11 N 1.46815 * 109.44179 * 55.60129 * 10 9 8 12 12 C 1.46901 * 111.00046 * 170.80370 * 11 10 9 13 13 C 1.52993 * 109.47440 * 176.34195 * 12 11 10 14 14 H 1.09000 * 109.47521 * 301.57687 * 13 12 11 15 15 C 1.53001 * 109.47129 * 61.57361 * 13 12 11 16 16 C 1.52997 * 109.47197 * 181.57080 * 13 12 11 17 17 C 1.50704 * 109.46998 * 175.00183 * 16 13 12 18 18 H 1.08002 * 120.00015 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99745 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99688 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47062 * 60.00005 * 21 19 17 23 23 H 1.48500 * 109.47216 * 299.99861 * 21 19 17 24 24 H 1.48499 * 109.47034 * 179.97438 * 21 19 17 25 25 C 1.46808 * 111.57142 * 295.16991 * 11 10 9 26 26 C 1.53211 * 117.84845 * 107.75076 * 8 7 5 27 27 H 1.08997 * 109.47416 * 60.00035 * 1 2 3 28 28 H 1.09005 * 109.46701 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 30 30 H 1.09002 * 117.50594 * 359.97438 * 7 5 3 31 31 H 1.09001 * 117.50355 * 214.93938 * 7 5 3 32 32 H 1.08997 * 109.60951 * 43.25020 * 9 8 7 33 33 H 1.09001 * 109.60999 * 282.73177 * 9 8 7 34 34 H 1.08999 * 109.47728 * 295.61109 * 10 9 8 35 35 H 1.08992 * 109.47983 * 175.59562 * 10 9 8 36 36 H 1.09002 * 109.47046 * 56.33859 * 12 11 10 37 37 H 1.09000 * 109.47034 * 296.34288 * 12 11 10 38 38 H 1.09009 * 109.46770 * 300.00084 * 15 13 12 39 39 H 1.09003 * 109.47164 * 59.99812 * 15 13 12 40 40 H 1.09004 * 109.47488 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.47267 * 55.00286 * 16 13 12 42 42 H 1.08994 * 109.47277 * 294.99982 * 16 13 12 43 43 H 0.96997 * 120.00220 * 0.02562 * 20 19 17 44 44 H 1.09001 * 109.47974 * 184.81900 * 25 11 10 45 45 H 1.08999 * 109.47559 * 304.84269 * 25 11 10 46 46 H 1.08992 * 109.61540 * 316.74183 * 26 8 7 47 47 H 1.08998 * 109.61480 * 77.27082 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0610 0.8212 -0.8593 7 6 4.2088 2.5244 0.6065 8 6 4.2776 1.1914 1.3487 9 6 3.4133 1.0252 2.6030 10 6 3.3039 -0.4686 2.9275 11 7 4.6498 -1.0388 3.0646 12 6 4.5898 -2.4103 3.5873 13 6 6.0000 -3.0020 3.6303 14 1 6.4303 -2.9888 2.6289 15 6 6.8736 -2.1702 4.5715 16 6 5.9329 -4.4438 4.1377 17 6 7.3033 -5.0665 4.0642 18 1 8.1387 -4.4912 3.6931 19 6 7.4907 -6.3706 4.4707 20 7 6.4737 -7.0709 4.9231 21 14 9.1893 -7.1426 4.3789 22 1 10.1327 -6.3649 5.2218 23 1 9.6613 -7.1344 2.9709 24 1 9.1242 -8.5420 4.8715 25 6 5.3880 -0.9909 1.7966 26 6 5.6284 0.4702 1.4010 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.5429 3.2895 1.0058 31 1 5.1260 2.8926 0.1469 32 1 2.4195 1.4335 2.4191 33 1 3.8775 1.5483 3.4391 34 1 2.7739 -0.9775 2.1224 35 1 2.7573 -0.5985 3.8615 36 1 3.9599 -3.0191 2.9386 37 1 4.1702 -2.3977 4.5933 38 1 6.9213 -1.1430 4.2100 39 1 6.4434 -2.1833 5.5730 40 1 7.8785 -2.5915 4.6018 41 1 5.2407 -5.0149 3.5190 42 1 5.5862 -4.4496 5.1710 43 1 5.5916 -6.6702 4.9704 44 1 6.3458 -1.4978 1.9142 45 1 4.8072 -1.4871 1.0190 46 1 6.1028 0.5104 0.4205 47 1 6.2702 0.9486 2.1407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602469668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:09 Heat of formation + Delta-G solvation = -77.376766 kcal Electronic energy + Delta-G solvation = -24767.652840 eV Core-core repulsion = 21336.518614 eV Total energy + Delta-G solvation = -3431.134226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10542 -39.39098 -37.37732 -36.46921 -34.57856 -32.28512 -31.06039 -29.77996 -28.32865 -26.42858 -25.44884 -24.55047 -23.45462 -22.82425 -21.49897 -20.88512 -19.18283 -18.76315 -17.73258 -16.94460 -16.87421 -16.52292 -15.58097 -14.98691 -14.80367 -14.53405 -14.16734 -13.94020 -13.69645 -13.43280 -13.23156 -13.20664 -12.85701 -12.53164 -12.33752 -12.14062 -11.88765 -11.68762 -11.52447 -11.33201 -11.25647 -11.05682 -10.98084 -10.91038 -10.66979 -10.57105 -10.29679 -10.18333 -10.08017 -9.91896 -9.61259 -9.39867 -8.44779 -8.28067 -8.01165 -6.30804 -3.98852 1.87441 2.38475 3.34850 3.45826 3.47808 3.66313 4.09578 4.27730 4.33971 4.45414 4.58423 4.64841 4.77355 4.83057 4.89713 5.13627 5.18194 5.24279 5.37075 5.41115 5.45398 5.47331 5.52120 5.60556 5.66591 5.73202 5.77210 5.81838 5.96882 6.00070 6.03917 6.10032 6.15057 6.20388 6.36514 6.46271 6.59075 6.91047 7.06650 7.13273 7.36836 7.37395 7.45074 7.48844 7.61747 8.28498 8.51904 8.94257 9.72636 11.09662 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.003129 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.949848 B = 8946.000375 C = 9397.289689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.351 6.351 3 C 0.497 3.503 4 O -0.510 6.510 5 C -0.168 4.168 6 H 0.138 0.862 7 C -0.139 4.139 8 C -0.085 4.085 9 C -0.081 4.081 10 C 0.057 3.943 11 N -0.533 5.533 12 C 0.061 3.939 13 C -0.079 4.079 14 H 0.060 0.940 15 C -0.122 4.122 16 C 0.014 3.986 17 C -0.593 4.593 18 H 0.049 0.951 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 1.067 2.933 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.049 3.951 26 C -0.078 4.078 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.002 0.998 42 H 0.007 0.993 43 H 0.268 0.732 44 H 0.092 0.908 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 18.215 -9.487 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.267 6.267 3 C 0.340 3.660 4 O -0.398 6.398 5 C -0.187 4.187 6 H 0.156 0.844 7 C -0.176 4.176 8 C -0.086 4.086 9 C -0.119 4.119 10 C -0.072 4.072 11 N -0.258 5.258 12 C -0.066 4.066 13 C -0.098 4.098 14 H 0.078 0.922 15 C -0.179 4.179 16 C -0.023 4.023 17 C -0.631 4.631 18 H 0.068 0.932 19 C -0.191 4.191 20 N -0.553 5.553 21 Si 0.895 3.105 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.078 4.078 26 C -0.115 4.115 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.021 0.979 42 H 0.025 0.975 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.212 17.383 -8.845 20.795 hybrid contribution -1.713 0.919 -1.062 2.215 sum -8.925 18.302 -9.906 22.644 Atomic orbital electron populations 1.23297 0.76282 1.03904 1.02442 1.86555 1.23324 1.33131 1.83690 1.22658 0.90523 0.81269 0.71501 1.90654 1.66937 1.36531 1.45657 1.21976 0.87862 1.07394 1.01437 0.84413 1.23175 1.02031 0.90799 1.01551 1.21719 0.97492 0.98947 0.90404 1.21274 0.97689 0.97087 0.95857 1.22036 0.90618 0.93953 1.00553 1.61797 1.15357 1.21428 1.27196 1.22284 0.98917 0.86312 0.99061 1.21189 0.92256 0.97023 0.99329 0.92224 1.21580 0.99960 0.97967 0.98408 1.19242 0.97550 0.90254 0.95264 1.22025 0.94516 0.99842 1.46766 0.93243 1.25811 1.04853 0.94543 0.93868 1.70775 1.01283 1.39592 1.43619 0.83578 0.74371 0.76212 0.76322 1.21480 1.21536 1.20882 1.22216 0.99941 0.95580 0.90112 1.21296 0.93223 0.95309 1.01694 0.91936 0.87919 0.91866 0.87649 0.87159 0.92308 0.89802 0.94494 0.90925 0.95588 0.91278 0.93763 0.94158 0.92714 0.97926 0.97505 0.92180 0.89034 0.95008 0.91206 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.01 10.42 -39.27 -0.41 -4.42 16 3 C 0.50 5.89 5.97 36.00 0.21 6.11 16 4 O -0.51 -7.06 16.34 -18.75 -0.31 -7.37 16 5 C -0.17 -1.68 5.98 -91.87 -0.55 -2.23 16 6 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 7 C -0.14 -1.22 9.51 -26.84 -0.26 -1.47 16 8 C -0.09 -0.86 2.02 -154.54 -0.31 -1.17 16 9 C -0.08 -0.90 5.52 -26.48 -0.15 -1.04 16 10 C 0.06 0.72 5.49 -3.74 -0.02 0.70 16 11 N -0.53 -7.69 4.00 -234.44 -0.94 -8.63 16 12 C 0.06 1.06 4.53 -3.83 -0.02 1.04 16 13 C -0.08 -1.60 1.85 -90.62 -0.17 -1.76 16 14 H 0.06 1.22 6.02 -51.93 -0.31 0.90 16 15 C -0.12 -2.33 8.78 37.16 0.33 -2.01 16 16 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 17 C -0.59 -16.69 8.41 -34.44 -0.29 -16.98 16 18 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 19 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 20 N -0.92 -28.24 13.65 55.43 0.76 -27.48 16 21 Si 1.07 25.37 29.90 -169.99 -5.08 20.29 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.05 0.66 5.00 -3.73 -0.02 0.64 16 26 C -0.08 -0.81 5.87 -26.48 -0.16 -0.96 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.11 0.99 7.92 -51.93 -0.41 0.58 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.66 6.85 -51.93 -0.36 0.30 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.50 7.97 -51.93 -0.41 0.08 16 35 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.04 0.75 7.49 -51.92 -0.39 0.36 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 41 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 42 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 43 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 44 H 0.09 1.34 5.53 -51.93 -0.29 1.05 16 45 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -32.05 369.05 -9.26 -41.30 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.31 Total: -1.99 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.53 Total: -17.26 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.18 Total: -36.12 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.72 Total: -11.78 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.05 -9.26 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.072 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds