Wall clock time and date at job start Tue Mar 31 2020 07:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99912 * 2 1 4 4 O 1.20821 * 119.99858 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00224 * 180.02562 * 3 2 1 6 6 H 1.09000 * 115.57466 * 60.82368 * 5 3 2 7 7 C 1.53050 * 117.50578 * 206.56317 * 5 3 2 8 8 C 1.52730 * 59.94483 * 107.46431 * 7 5 3 9 9 C 1.53223 * 117.84308 * 252.25547 * 8 7 5 10 10 C 1.53259 * 108.62242 * 162.98856 * 9 8 7 11 11 N 1.46815 * 109.44179 * 55.60129 * 10 9 8 12 12 C 1.46901 * 111.00046 * 170.80370 * 11 10 9 13 13 C 1.52993 * 109.47440 * 176.34195 * 12 11 10 14 14 H 1.09000 * 109.47521 * 301.57687 * 13 12 11 15 15 C 1.53001 * 109.47129 * 61.57361 * 13 12 11 16 16 C 1.52997 * 109.47197 * 181.57080 * 13 12 11 17 17 C 1.50704 * 109.46998 * 175.00183 * 16 13 12 18 18 H 1.08002 * 120.00015 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99745 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99688 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47062 * 60.00005 * 21 19 17 23 23 H 1.48500 * 109.47216 * 299.99861 * 21 19 17 24 24 H 1.48499 * 109.47034 * 179.97438 * 21 19 17 25 25 C 1.46808 * 111.57142 * 295.16991 * 11 10 9 26 26 C 1.53211 * 117.84845 * 107.75076 * 8 7 5 27 27 H 1.08997 * 109.47416 * 60.00035 * 1 2 3 28 28 H 1.09005 * 109.46701 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 30 30 H 1.09002 * 117.50594 * 359.97438 * 7 5 3 31 31 H 1.09001 * 117.50355 * 214.93938 * 7 5 3 32 32 H 1.08997 * 109.60951 * 43.25020 * 9 8 7 33 33 H 1.09001 * 109.60999 * 282.73177 * 9 8 7 34 34 H 1.08999 * 109.47728 * 295.61109 * 10 9 8 35 35 H 1.08992 * 109.47983 * 175.59562 * 10 9 8 36 36 H 1.09002 * 109.47046 * 56.33859 * 12 11 10 37 37 H 1.09000 * 109.47034 * 296.34288 * 12 11 10 38 38 H 1.09009 * 109.46770 * 300.00084 * 15 13 12 39 39 H 1.09003 * 109.47164 * 59.99812 * 15 13 12 40 40 H 1.09004 * 109.47488 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.47267 * 55.00286 * 16 13 12 42 42 H 1.08994 * 109.47277 * 294.99982 * 16 13 12 43 43 H 0.96997 * 120.00220 * 0.02562 * 20 19 17 44 44 H 1.09001 * 109.47974 * 184.81900 * 25 11 10 45 45 H 1.08999 * 109.47559 * 304.84269 * 25 11 10 46 46 H 1.08992 * 109.61540 * 316.74183 * 26 8 7 47 47 H 1.08998 * 109.61480 * 77.27082 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0610 0.8212 -0.8593 7 6 4.2088 2.5244 0.6065 8 6 4.2776 1.1914 1.3487 9 6 3.4133 1.0252 2.6030 10 6 3.3039 -0.4686 2.9275 11 7 4.6498 -1.0388 3.0646 12 6 4.5898 -2.4103 3.5873 13 6 6.0000 -3.0020 3.6303 14 1 6.4303 -2.9888 2.6289 15 6 6.8736 -2.1702 4.5715 16 6 5.9329 -4.4438 4.1377 17 6 7.3033 -5.0665 4.0642 18 1 8.1387 -4.4912 3.6931 19 6 7.4907 -6.3706 4.4707 20 7 6.4737 -7.0709 4.9231 21 14 9.1893 -7.1426 4.3789 22 1 10.1327 -6.3649 5.2218 23 1 9.6613 -7.1344 2.9709 24 1 9.1242 -8.5420 4.8715 25 6 5.3880 -0.9909 1.7966 26 6 5.6284 0.4702 1.4010 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.5429 3.2895 1.0058 31 1 5.1260 2.8926 0.1469 32 1 2.4195 1.4335 2.4191 33 1 3.8775 1.5483 3.4391 34 1 2.7739 -0.9775 2.1224 35 1 2.7573 -0.5985 3.8615 36 1 3.9599 -3.0191 2.9386 37 1 4.1702 -2.3977 4.5933 38 1 6.9213 -1.1430 4.2100 39 1 6.4434 -2.1833 5.5730 40 1 7.8785 -2.5915 4.6018 41 1 5.2407 -5.0149 3.5190 42 1 5.5862 -4.4496 5.1710 43 1 5.5916 -6.6702 4.9704 44 1 6.3458 -1.4978 1.9142 45 1 4.8072 -1.4871 1.0190 46 1 6.1028 0.5104 0.4205 47 1 6.2702 0.9486 2.1407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602469668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:08 Heat of formation + Delta-G solvation = -94.952386 kcal Electronic energy + Delta-G solvation = -24768.414976 eV Core-core repulsion = 21336.518614 eV Total energy + Delta-G solvation = -3431.896362 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97133 -40.39071 -38.51651 -37.47661 -36.19549 -34.17479 -32.02297 -30.95299 -29.08694 -28.36721 -26.81114 -25.53835 -24.61119 -24.42667 -22.68939 -21.70733 -20.59841 -19.82760 -18.90379 -18.58393 -17.78476 -17.49988 -16.67360 -16.18192 -16.15821 -15.62462 -15.45713 -15.38321 -14.95361 -14.86632 -14.40574 -14.16330 -13.92360 -13.62963 -13.45009 -13.32420 -13.23438 -13.05167 -12.89545 -12.70398 -12.50758 -12.44866 -12.19155 -11.94881 -11.92161 -11.88088 -11.79479 -11.59533 -11.38725 -11.17273 -10.99447 -10.78093 -10.50387 -10.48757 -9.22212 -8.63365 -6.32394 0.99433 1.53981 1.62654 1.63795 1.81250 2.58483 2.60144 2.94912 3.20826 3.48535 3.54829 3.70842 3.78771 3.92301 4.03828 4.16845 4.19713 4.22743 4.26466 4.38982 4.42663 4.46700 4.51395 4.57560 4.61296 4.78534 4.79912 4.81173 4.84276 4.86972 4.90152 4.96802 5.05744 5.09170 5.12240 5.20294 5.29580 5.32196 5.35392 5.41796 5.50039 5.68169 6.03609 6.13696 6.21778 6.26177 6.62414 6.64058 7.48908 8.77298 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.003129 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.949848 B = 8946.000375 C = 9397.289689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.495 3.505 4 O -0.536 6.536 5 C -0.176 4.176 6 H 0.155 0.845 7 C -0.120 4.120 8 C -0.092 4.092 9 C -0.075 4.075 10 C 0.058 3.942 11 N -0.530 5.530 12 C 0.073 3.927 13 C -0.070 4.070 14 H 0.060 0.940 15 C -0.111 4.111 16 C 0.017 3.983 17 C -0.603 4.603 18 H 0.054 0.946 19 C -0.044 4.044 20 N -0.943 5.943 21 Si 1.115 2.885 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.287 1.287 25 C 0.046 3.954 26 C -0.068 4.068 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.014 0.986 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.037 0.963 41 H -0.021 1.021 42 H -0.015 1.015 43 H 0.253 0.747 44 H 0.078 0.922 45 H 0.024 0.976 46 H 0.093 0.907 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 19.940 -10.540 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.340 3.660 4 O -0.426 6.426 5 C -0.194 4.194 6 H 0.172 0.828 7 C -0.157 4.157 8 C -0.092 4.092 9 C -0.113 4.113 10 C -0.070 4.070 11 N -0.254 5.254 12 C -0.055 4.055 13 C -0.088 4.088 14 H 0.078 0.922 15 C -0.168 4.168 16 C -0.021 4.021 17 C -0.641 4.641 18 H 0.073 0.927 19 C -0.240 4.240 20 N -0.581 5.581 21 Si 0.937 3.063 22 H -0.193 1.193 23 H -0.193 1.193 24 H -0.212 1.212 25 C -0.081 4.081 26 C -0.106 4.106 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.056 0.944 41 H -0.003 1.003 42 H 0.003 0.997 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.042 0.958 46 H 0.111 0.889 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.857 19.135 -9.909 22.330 hybrid contribution -2.238 0.382 -0.745 2.389 sum -8.095 19.516 -10.654 23.663 Atomic orbital electron populations 1.23529 0.74960 1.05425 1.02655 1.86550 1.24832 1.33152 1.83419 1.23062 0.91325 0.80945 0.70658 1.90637 1.67683 1.37242 1.47001 1.22157 0.86724 1.08680 1.01886 0.82768 1.23262 1.02560 0.89798 1.00091 1.21650 0.97167 1.00466 0.89955 1.21193 0.97981 0.95385 0.96735 1.22053 0.89472 0.95099 1.00335 1.61811 1.16514 1.19034 1.28074 1.22005 0.96588 0.87945 0.98961 1.21015 0.94469 0.94098 0.99245 0.92160 1.21465 0.98384 0.99084 0.97849 1.19183 0.95810 0.93408 0.93684 1.22433 0.95678 1.00115 1.45844 0.92725 1.27400 1.07858 0.95738 0.93004 1.70915 1.01292 1.40084 1.45858 0.82964 0.70310 0.75308 0.77759 1.19345 1.19332 1.21247 1.22274 0.98782 0.97847 0.89223 1.21252 0.93490 0.92769 1.03040 0.91477 0.85828 0.91935 0.88264 0.84542 0.92533 0.89345 0.95354 0.90903 0.96736 0.91675 0.90980 0.94764 0.94425 1.00287 0.99676 0.93742 0.90331 0.95758 0.88860 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.01 10.42 -51.45 -0.54 -8.55 16 3 C 0.50 11.15 5.97 71.24 0.43 11.58 16 4 O -0.54 -14.38 16.34 21.98 0.36 -14.02 16 5 C -0.18 -3.09 5.98 -11.60 -0.07 -3.16 16 6 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 7 C -0.12 -1.73 9.51 30.52 0.29 -1.44 16 8 C -0.09 -1.62 2.02 -52.20 -0.11 -1.73 16 9 C -0.08 -1.53 5.52 30.76 0.17 -1.36 16 10 C 0.06 1.43 5.49 86.41 0.47 1.90 16 11 N -0.53 -14.69 4.00 -895.64 -3.58 -18.28 16 12 C 0.07 2.52 4.53 86.30 0.39 2.91 16 13 C -0.07 -2.81 1.85 -10.80 -0.02 -2.83 16 14 H 0.06 2.44 6.02 -2.39 -0.01 2.42 16 15 C -0.11 -4.14 8.78 71.98 0.63 -3.51 16 16 C 0.02 0.87 3.76 29.85 0.11 0.98 16 17 C -0.60 -34.24 8.41 25.60 0.22 -34.02 16 18 H 0.05 2.99 7.06 -2.91 -0.02 2.97 16 19 C -0.04 -2.54 5.46 84.66 0.46 -2.08 16 20 N -0.94 -59.50 13.65 21.45 0.29 -59.20 16 21 Si 1.12 50.50 29.90 68.60 2.05 52.55 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 25 C 0.05 1.16 5.00 86.41 0.43 1.59 16 26 C -0.07 -1.21 5.87 30.76 0.18 -1.03 16 27 H 0.07 1.00 8.13 -2.39 -0.02 0.99 16 28 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.10 1.61 7.92 -2.39 -0.02 1.59 16 31 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.19 6.85 -2.39 -0.02 1.17 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.03 0.75 7.97 -2.39 -0.02 0.73 16 35 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 2.28 7.49 -2.38 -0.02 2.27 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 1.51 6.95 -2.39 -0.02 1.50 16 41 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 42 H -0.02 -0.85 8.01 -2.39 -0.02 -0.87 16 43 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 44 H 0.08 2.18 5.53 -2.39 -0.01 2.16 16 45 H 0.02 0.64 8.12 -2.39 -0.02 0.63 16 46 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 47 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -69.90 369.05 4.39 -65.51 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.02 Total: 12.54 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.79 Total: -30.55 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -3.29 Total: -77.48 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.18 Total: -22.57 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -69.90 4.39 -65.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.443 kcal (2) G-P(sol) polarization free energy of solvation -69.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds