Wall clock time and date at job start Tue Mar 31 2020 07:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47089 * 2 1 4 4 C 1.42900 * 114.00045 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.93218 * 21.83439 * 4 3 2 6 6 C 1.53882 * 113.64327 * 250.49294 * 4 3 2 7 7 C 1.53882 * 87.18235 * 270.49806 * 6 4 3 8 8 H 1.09007 * 113.63812 * 89.49923 * 7 6 4 9 9 N 1.46895 * 113.64240 * 220.39950 * 7 6 4 10 10 C 1.46905 * 111.00116 * 250.74557 * 9 7 6 11 11 C 1.52994 * 109.47202 * 185.02974 * 10 9 7 12 12 C 1.50699 * 115.55646 * 65.01324 * 11 10 9 13 13 H 1.07999 * 120.00372 * 264.72843 * 12 11 10 14 14 C 1.37876 * 119.99647 * 84.71391 * 12 11 10 15 15 N 1.31519 * 120.00149 * 4.95698 * 14 12 11 16 16 Si 1.86800 * 120.00017 * 184.94721 * 14 12 11 17 17 H 1.48500 * 109.47202 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47101 * 120.00413 * 16 14 12 19 19 H 1.48500 * 109.46981 * 240.00850 * 16 14 12 20 20 C 1.53006 * 117.49583 * 279.34464 * 11 10 9 21 21 C 1.53006 * 117.49818 * 210.69044 * 11 10 9 22 22 C 1.53193 * 113.64119 * 153.16729 * 4 3 2 23 23 C 1.53851 * 114.62308 * 333.31722 * 22 4 3 24 24 C 1.55442 * 102.04932 * 208.57357 * 23 22 4 25 25 C 1.54991 * 101.01343 * 33.66637 * 24 23 22 26 26 O 1.42625 * 115.40542 * 206.48904 * 22 4 3 27 27 H 1.09006 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47093 * 299.99974 * 1 2 3 29 29 H 1.08995 * 109.47215 * 59.99940 * 1 2 3 30 30 H 1.09000 * 109.47093 * 240.00025 * 2 1 3 31 31 H 1.09002 * 109.47292 * 119.99659 * 2 1 3 32 32 H 1.09002 * 113.59586 * 25.07655 * 6 4 3 33 33 H 1.09007 * 113.60030 * 155.92375 * 6 4 3 34 34 H 1.00895 * 111.00186 * 14.69916 * 9 7 6 35 35 H 1.09000 * 109.47050 * 305.03056 * 10 9 7 36 36 H 1.08999 * 109.46925 * 65.02642 * 10 9 7 37 37 H 0.96994 * 119.99804 * 185.00059 * 15 14 12 38 38 H 1.09000 * 117.50034 * 0.02562 * 20 11 10 39 39 H 1.09004 * 117.49699 * 145.02269 * 20 11 10 40 40 H 1.09001 * 117.49737 * 214.98114 * 21 11 10 41 41 H 1.09001 * 117.49784 * 359.97438 * 21 11 10 42 42 H 1.09003 * 110.91584 * 326.76037 * 23 22 4 43 43 H 1.08999 * 110.91448 * 90.38840 * 23 22 4 44 44 H 1.09005 * 111.10905 * 275.72994 * 24 23 22 45 45 H 1.09001 * 111.14535 * 151.62387 * 24 23 22 46 46 H 1.09004 * 110.30379 * 204.93889 * 25 24 23 47 47 H 1.08998 * 110.30291 * 82.79259 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9276 0.5648 -0.3743 6 6 4.0094 1.9779 1.3280 7 6 3.8540 3.3975 0.7548 8 1 2.8850 3.8503 0.9654 9 7 4.9801 4.2866 1.0698 10 6 4.5838 5.3138 2.0424 11 6 5.7410 6.2929 2.2502 12 6 6.1210 7.1152 1.0459 13 1 6.9233 6.7891 0.4007 14 6 5.4443 8.2838 0.7678 15 7 4.5340 8.7317 1.6047 16 14 5.8205 9.2310 -0.7977 17 1 6.8761 8.5214 -1.5641 18 1 4.5908 9.3295 -1.6243 19 1 6.2934 10.5949 -0.4494 20 6 6.8640 5.8680 3.1985 21 6 5.8707 6.9517 3.6251 22 6 3.9441 2.7571 -0.6341 23 6 3.0043 3.3727 -1.6853 24 6 4.0022 4.1159 -2.6170 25 6 5.2315 3.1747 -2.5452 26 8 5.2550 2.6887 -1.1917 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3694 1.7822 2.1884 33 1 5.0462 1.6861 1.4957 34 1 5.7740 3.7605 1.4030 35 1 3.7143 5.8534 1.6669 36 1 4.3347 4.8389 2.9913 37 1 4.0070 9.5131 1.3754 38 1 6.7787 4.8909 3.6739 39 1 7.8777 6.1837 2.9515 40 1 6.2311 7.9798 3.6585 41 1 5.1313 6.6879 4.3813 42 1 2.4680 2.5958 -2.2302 43 1 2.3086 4.0728 -1.2228 44 1 4.2417 5.1050 -2.2265 45 1 3.6163 4.1810 -3.6343 46 1 6.1448 3.7280 -2.7644 47 1 5.1142 2.3455 -3.2428 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602642088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:02 Heat of formation + Delta-G solvation = -37.017793 kcal Electronic energy + Delta-G solvation = -25417.691249 eV Core-core repulsion = 21988.307119 eV Total energy + Delta-G solvation = -3429.384130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51372 -37.73013 -36.90690 -35.50530 -32.41894 -31.77305 -31.69423 -30.67060 -27.35513 -25.81488 -24.72766 -23.16277 -22.67084 -22.35145 -21.27134 -20.89007 -19.37852 -18.77289 -16.66710 -16.39079 -15.91142 -15.78927 -15.57051 -14.88234 -14.54800 -14.24305 -13.99389 -13.55928 -13.33614 -13.27084 -13.02895 -12.74159 -12.63855 -12.20388 -12.15806 -11.82173 -11.62338 -11.46046 -11.35645 -11.10641 -10.93227 -10.85626 -10.77701 -10.58417 -10.44579 -10.29541 -10.07991 -10.05572 -9.55886 -9.29378 -8.95922 -8.82899 -8.23546 -7.93373 -7.31819 -5.86879 -3.88314 3.27693 3.37383 3.45634 3.50922 4.24465 4.54565 4.59950 4.72894 4.82611 4.91335 4.96490 5.04166 5.17789 5.20778 5.26613 5.34327 5.39420 5.42546 5.44122 5.57834 5.60301 5.66509 5.72644 5.93000 5.93598 6.00292 6.01842 6.07568 6.23422 6.27450 6.29506 6.41234 6.47073 6.56251 6.60453 6.71609 6.84466 6.98418 7.11621 7.24120 7.46947 7.60750 7.69183 8.05234 8.11473 8.32159 8.66034 9.11152 9.74145 11.22485 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.004863 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.608063 B = 5756.512647 C = 6501.692511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.359 6.359 4 C 0.060 3.940 5 H 0.074 0.926 6 C -0.185 4.185 7 C 0.083 3.917 8 H 0.100 0.900 9 N -0.644 5.644 10 C 0.107 3.893 11 C 0.050 3.950 12 C -0.461 4.461 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.884 3.116 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.288 1.288 20 C -0.217 4.217 21 C -0.154 4.154 22 C 0.103 3.897 23 C -0.125 4.125 24 C -0.155 4.155 25 C 0.056 3.944 26 O -0.338 6.338 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.336 0.664 35 H 0.070 0.930 36 H -0.006 1.006 37 H 0.255 0.745 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.614 -16.381 -4.923 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.000 4.000 5 H 0.092 0.908 6 C -0.224 4.224 7 C -0.029 4.029 8 H 0.118 0.882 9 N -0.272 5.272 10 C -0.021 4.021 11 C 0.049 3.951 12 C -0.499 4.499 13 H 0.077 0.923 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.712 3.288 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.215 1.215 20 C -0.254 4.254 21 C -0.192 4.192 22 C 0.062 3.938 23 C -0.162 4.162 24 C -0.193 4.193 25 C -0.020 4.020 26 O -0.256 6.256 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.155 0.845 35 H 0.088 0.912 36 H 0.012 0.988 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.728 -15.672 -5.309 17.510 hybrid contribution -0.026 -0.169 -0.105 0.201 sum -5.754 -15.842 -5.414 17.702 Atomic orbital electron populations 1.21739 0.93776 1.02046 1.03253 1.22506 0.95433 0.84084 0.99915 1.87874 1.19452 1.25932 1.94567 1.23283 0.81243 0.98254 0.97185 0.90778 1.24209 1.01268 0.99692 0.97269 1.23274 0.96253 0.90169 0.93246 0.88184 1.60014 1.05258 1.14412 1.47555 1.21584 0.99201 0.91307 0.90036 1.18839 0.91291 0.94844 0.90078 1.20346 1.17552 1.03785 1.08187 0.92326 1.24913 0.95846 0.96655 0.96041 1.70031 1.23765 1.24617 1.34246 0.86668 0.78135 0.79710 0.84264 1.19767 1.21234 1.21490 1.22976 0.96277 0.97398 1.08742 1.22499 1.00447 0.96553 0.99703 1.23062 0.83533 0.92740 0.94510 1.22735 0.97759 0.99451 0.96280 1.23276 0.95341 1.00894 0.99758 1.23357 0.99363 0.95658 0.83628 1.88283 1.26047 1.84556 1.26666 0.91278 0.91767 0.91833 0.93555 0.93481 0.91286 0.89071 0.84545 0.91193 0.98802 0.93503 0.92337 0.90663 0.89812 0.92413 0.91142 0.89971 0.89146 0.90929 0.89625 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.88 16 2 C 0.06 0.57 6.51 37.15 0.24 0.81 16 3 O -0.36 -4.73 9.45 -35.23 -0.33 -5.06 16 4 C 0.06 0.81 4.08 -26.17 -0.11 0.71 16 5 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 6 C -0.18 -2.67 7.52 -25.81 -0.19 -2.86 16 7 C 0.08 1.41 3.67 -67.15 -0.25 1.17 16 8 H 0.10 1.80 7.57 -51.92 -0.39 1.41 16 9 N -0.64 -12.87 6.12 -106.13 -0.65 -13.52 16 10 C 0.11 2.42 5.38 -3.82 -0.02 2.40 16 11 C 0.05 1.24 1.62 -155.66 -0.25 0.99 16 12 C -0.46 -12.68 8.74 -34.44 -0.30 -12.98 16 13 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 14 C 0.07 1.84 5.43 -17.82 -0.10 1.75 16 15 N -0.89 -25.50 12.66 55.43 0.70 -24.79 16 16 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 C -0.22 -4.84 9.96 -26.69 -0.27 -5.10 16 21 C -0.15 -3.72 9.15 -26.69 -0.24 -3.97 16 22 C 0.10 1.61 1.41 -89.97 -0.13 1.48 16 23 C -0.12 -1.82 5.79 -24.99 -0.14 -1.97 16 24 C -0.16 -2.24 7.16 -24.38 -0.17 -2.42 16 25 C 0.06 0.81 7.79 38.21 0.30 1.10 16 26 O -0.34 -5.63 10.72 -35.23 -0.38 -6.00 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.29 7.82 -51.93 -0.41 0.89 16 34 H 0.34 6.55 8.23 -39.29 -0.32 6.22 16 35 H 0.07 1.75 8.03 -51.93 -0.42 1.33 16 36 H -0.01 -0.13 8.09 -51.93 -0.42 -0.55 16 37 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.08 2.18 8.14 -51.93 -0.42 1.76 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 43 H 0.08 1.27 7.79 -51.93 -0.40 0.87 16 44 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -29.19 377.82 -9.89 -39.09 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.65 Total: 7.78 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.25 Total: -19.77 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.05 Total: -38.32 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.71 Total: -11.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.19 -9.89 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602642088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.068 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds