Wall clock time and date at job start Tue Mar 31 2020 07:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47089 * 2 1 4 4 C 1.42900 * 114.00045 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.93218 * 21.83439 * 4 3 2 6 6 C 1.53882 * 113.64327 * 250.49294 * 4 3 2 7 7 C 1.53882 * 87.18235 * 270.49806 * 6 4 3 8 8 H 1.09007 * 113.63812 * 89.49923 * 7 6 4 9 9 N 1.46895 * 113.64240 * 220.39950 * 7 6 4 10 10 C 1.46905 * 111.00116 * 250.74557 * 9 7 6 11 11 C 1.52994 * 109.47202 * 185.02974 * 10 9 7 12 12 C 1.50699 * 115.55646 * 65.01324 * 11 10 9 13 13 H 1.07999 * 120.00372 * 264.72843 * 12 11 10 14 14 C 1.37876 * 119.99647 * 84.71391 * 12 11 10 15 15 N 1.31519 * 120.00149 * 4.95698 * 14 12 11 16 16 Si 1.86800 * 120.00017 * 184.94721 * 14 12 11 17 17 H 1.48500 * 109.47202 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47101 * 120.00413 * 16 14 12 19 19 H 1.48500 * 109.46981 * 240.00850 * 16 14 12 20 20 C 1.53006 * 117.49583 * 279.34464 * 11 10 9 21 21 C 1.53006 * 117.49818 * 210.69044 * 11 10 9 22 22 C 1.53193 * 113.64119 * 153.16729 * 4 3 2 23 23 C 1.53851 * 114.62308 * 333.31722 * 22 4 3 24 24 C 1.55442 * 102.04932 * 208.57357 * 23 22 4 25 25 C 1.54991 * 101.01343 * 33.66637 * 24 23 22 26 26 O 1.42625 * 115.40542 * 206.48904 * 22 4 3 27 27 H 1.09006 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47093 * 299.99974 * 1 2 3 29 29 H 1.08995 * 109.47215 * 59.99940 * 1 2 3 30 30 H 1.09000 * 109.47093 * 240.00025 * 2 1 3 31 31 H 1.09002 * 109.47292 * 119.99659 * 2 1 3 32 32 H 1.09002 * 113.59586 * 25.07655 * 6 4 3 33 33 H 1.09007 * 113.60030 * 155.92375 * 6 4 3 34 34 H 1.00895 * 111.00186 * 14.69916 * 9 7 6 35 35 H 1.09000 * 109.47050 * 305.03056 * 10 9 7 36 36 H 1.08999 * 109.46925 * 65.02642 * 10 9 7 37 37 H 0.96994 * 119.99804 * 185.00059 * 15 14 12 38 38 H 1.09000 * 117.50034 * 0.02562 * 20 11 10 39 39 H 1.09004 * 117.49699 * 145.02269 * 20 11 10 40 40 H 1.09001 * 117.49737 * 214.98114 * 21 11 10 41 41 H 1.09001 * 117.49784 * 359.97438 * 21 11 10 42 42 H 1.09003 * 110.91584 * 326.76037 * 23 22 4 43 43 H 1.08999 * 110.91448 * 90.38840 * 23 22 4 44 44 H 1.09005 * 111.10905 * 275.72994 * 24 23 22 45 45 H 1.09001 * 111.14535 * 151.62387 * 24 23 22 46 46 H 1.09004 * 110.30379 * 204.93889 * 25 24 23 47 47 H 1.08998 * 110.30291 * 82.79259 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9276 0.5648 -0.3743 6 6 4.0094 1.9779 1.3280 7 6 3.8540 3.3975 0.7548 8 1 2.8850 3.8503 0.9654 9 7 4.9801 4.2866 1.0698 10 6 4.5838 5.3138 2.0424 11 6 5.7410 6.2929 2.2502 12 6 6.1210 7.1152 1.0459 13 1 6.9233 6.7891 0.4007 14 6 5.4443 8.2838 0.7678 15 7 4.5340 8.7317 1.6047 16 14 5.8205 9.2310 -0.7977 17 1 6.8761 8.5214 -1.5641 18 1 4.5908 9.3295 -1.6243 19 1 6.2934 10.5949 -0.4494 20 6 6.8640 5.8680 3.1985 21 6 5.8707 6.9517 3.6251 22 6 3.9441 2.7571 -0.6341 23 6 3.0043 3.3727 -1.6853 24 6 4.0022 4.1159 -2.6170 25 6 5.2315 3.1747 -2.5452 26 8 5.2550 2.6887 -1.1917 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3694 1.7822 2.1884 33 1 5.0462 1.6861 1.4957 34 1 5.7740 3.7605 1.4030 35 1 3.7143 5.8534 1.6669 36 1 4.3347 4.8389 2.9913 37 1 4.0070 9.5131 1.3754 38 1 6.7787 4.8909 3.6739 39 1 7.8777 6.1837 2.9515 40 1 6.2311 7.9798 3.6585 41 1 5.1313 6.6879 4.3813 42 1 2.4680 2.5958 -2.2302 43 1 2.3086 4.0728 -1.2228 44 1 4.2417 5.1050 -2.2265 45 1 3.6163 4.1810 -3.6343 46 1 6.1448 3.7280 -2.7644 47 1 5.1142 2.3455 -3.2428 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602642088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:02 Heat of formation + Delta-G solvation = -54.645225 kcal Electronic energy + Delta-G solvation = -25418.455632 eV Core-core repulsion = 21988.307119 eV Total energy + Delta-G solvation = -3430.148512 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69881 -38.78584 -38.67691 -36.81754 -34.02726 -33.61367 -32.95920 -31.55069 -28.51707 -27.75900 -26.48562 -24.12524 -23.95761 -23.42108 -22.79165 -22.43277 -20.98896 -20.32746 -18.10317 -17.69657 -17.33269 -16.96309 -16.59009 -16.48007 -16.13198 -15.92446 -15.26463 -14.97207 -14.93359 -14.48854 -14.31443 -14.05757 -13.73615 -13.55481 -13.35720 -13.15931 -13.02846 -12.83388 -12.72566 -12.61496 -12.56456 -12.34353 -12.18168 -12.07091 -11.99324 -11.84744 -11.58355 -11.25371 -11.18907 -10.86268 -10.50396 -10.30314 -10.18871 -9.86751 -8.86521 -8.01120 -6.07348 1.40317 1.43163 1.54193 2.26942 2.49162 3.14766 3.28138 3.28352 3.54021 3.62058 3.70016 3.77529 3.98652 4.05925 4.15626 4.20920 4.25249 4.32092 4.41951 4.44743 4.46749 4.52426 4.58075 4.73209 4.79969 4.82851 4.83200 4.87510 4.88920 4.96427 4.97955 5.02431 5.05826 5.10778 5.15162 5.23729 5.29816 5.31641 5.37356 5.68888 5.75789 5.89622 6.08711 6.35089 6.48063 6.57660 6.80842 6.95946 7.57351 9.07622 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.004863 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.608063 B = 5756.512647 C = 6501.692511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.376 6.376 4 C 0.076 3.924 5 H 0.092 0.908 6 C -0.174 4.174 7 C 0.068 3.932 8 H 0.082 0.918 9 N -0.652 5.652 10 C 0.126 3.874 11 C 0.025 3.975 12 C -0.470 4.470 13 H 0.045 0.955 14 C 0.022 3.978 15 N -0.915 5.915 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.286 1.286 20 C -0.189 4.189 21 C -0.161 4.161 22 C 0.099 3.901 23 C -0.122 4.122 24 C -0.154 4.154 25 C 0.053 3.947 26 O -0.357 6.357 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.339 0.661 35 H 0.035 0.965 36 H 0.005 0.995 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 -18.731 -5.863 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.296 6.296 4 C 0.017 3.983 5 H 0.110 0.890 6 C -0.213 4.213 7 C -0.043 4.043 8 H 0.100 0.900 9 N -0.281 5.281 10 C -0.004 4.004 11 C 0.024 3.976 12 C -0.509 4.509 13 H 0.063 0.937 14 C -0.176 4.176 15 N -0.554 5.554 16 Si 0.767 3.233 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.212 1.212 20 C -0.226 4.226 21 C -0.199 4.199 22 C 0.058 3.942 23 C -0.160 4.160 24 C -0.191 4.191 25 C -0.023 4.023 26 O -0.275 6.275 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.158 0.842 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.757 -18.038 -6.255 19.941 hybrid contribution -0.029 0.543 0.191 0.577 sum -5.786 -17.495 -6.064 19.399 Atomic orbital electron populations 1.21760 0.92798 1.03408 1.02619 1.22765 0.96256 0.82666 1.01003 1.87871 1.18947 1.28198 1.94548 1.23051 0.81812 0.97735 0.95743 0.89019 1.24113 1.01862 0.97281 0.98061 1.23374 0.94401 0.91002 0.95523 0.89957 1.59943 1.06467 1.14928 1.46762 1.21201 0.96912 0.91392 0.90854 1.18950 0.93333 0.95806 0.89485 1.20528 1.17087 1.04272 1.08974 0.93709 1.25532 0.95886 0.97572 0.98603 1.70129 1.24662 1.25065 1.35572 0.85785 0.77965 0.78429 0.81140 1.19403 1.20946 1.21195 1.22954 0.95253 0.97891 1.06510 1.22389 1.01751 0.95836 0.99925 1.23070 0.83562 0.93871 0.93714 1.22715 0.97433 0.99571 0.96235 1.23231 0.95815 0.99017 1.01052 1.23514 0.98911 0.96562 0.83291 1.88241 1.26653 1.84708 1.27910 0.88920 0.92653 0.92222 0.92150 0.92644 0.90783 0.88477 0.84199 0.94685 0.97746 0.93632 0.89428 0.90818 0.92401 0.91325 0.89121 0.91720 0.92839 0.88159 0.90041 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.84 6.51 71.98 0.47 1.31 16 3 O -0.38 -9.17 9.45 -148.98 -1.41 -10.58 16 4 C 0.08 1.91 4.08 30.96 0.13 2.03 16 5 H 0.09 2.02 7.90 -2.39 -0.02 2.00 16 6 C -0.17 -4.75 7.52 31.19 0.23 -4.51 16 7 C 0.07 2.34 3.67 45.28 0.17 2.50 16 8 H 0.08 3.07 7.57 -2.38 -0.02 3.05 16 9 N -0.65 -26.23 6.12 -489.68 -3.00 -29.23 16 10 C 0.13 5.76 5.38 86.30 0.46 6.23 16 11 C 0.02 1.25 1.62 -52.93 -0.09 1.16 16 12 C -0.47 -26.40 8.74 25.60 0.22 -26.18 16 13 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 14 C 0.02 1.26 5.43 84.65 0.46 1.72 16 15 N -0.91 -53.81 12.66 21.45 0.27 -53.54 16 16 Si 0.94 45.20 29.54 68.60 2.03 47.23 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 C -0.19 -8.25 9.96 30.62 0.30 -7.94 16 21 C -0.16 -7.83 9.15 30.62 0.28 -7.55 16 22 C 0.10 3.00 1.41 -10.37 -0.01 2.98 16 23 C -0.12 -3.47 5.79 31.72 0.18 -3.28 16 24 C -0.15 -4.33 7.16 32.12 0.23 -4.10 16 25 C 0.05 1.43 7.79 72.66 0.57 2.00 16 26 O -0.36 -11.41 10.72 -148.98 -1.60 -13.00 16 27 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.10 2.55 7.82 -2.38 -0.02 2.54 16 34 H 0.34 13.02 8.23 -89.70 -0.74 12.29 16 35 H 0.03 1.82 8.03 -2.39 -0.02 1.80 16 36 H 0.00 0.19 8.09 -2.39 -0.02 0.18 16 37 H 0.25 14.40 8.32 -92.71 -0.77 13.63 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.09 2.20 7.95 -2.39 -0.02 2.18 16 43 H 0.06 2.04 7.79 -2.39 -0.02 2.03 16 44 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -63.39 377.82 0.83 -62.56 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.18 Total: 31.60 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.35 Total: -35.04 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.73 Total: -82.77 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -3.01 Total: -23.58 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -63.39 0.83 -62.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602642088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.916 kcal (2) G-P(sol) polarization free energy of solvation -63.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds