Wall clock time and date at job start Tue Mar 31 2020 07:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.90044 * 2 1 4 4 O 1.43884 * 109.91112 * 238.72157 * 2 1 3 5 5 C 1.44425 * 106.99452 * 214.23344 * 4 2 1 6 6 C 1.55111 * 103.56358 * 39.74505 * 5 4 2 7 7 C 1.53596 * 109.91042 * 121.08846 * 2 1 3 8 8 C 1.52479 * 110.41028 * 3.09685 * 7 2 1 9 9 N 1.47126 * 109.32583 * 292.45351 * 8 7 2 10 10 C 1.46904 * 110.99810 * 178.65528 * 9 8 7 11 11 C 1.53006 * 109.46979 * 197.03293 * 10 9 8 12 12 C 1.50710 * 115.54714 * 292.58694 * 11 10 9 13 13 H 1.08000 * 119.99591 * 143.44502 * 12 11 10 14 14 C 1.37875 * 119.99918 * 323.44660 * 12 11 10 15 15 N 1.31510 * 120.00056 * 342.02854 * 14 12 11 16 16 Si 1.86802 * 119.99655 * 162.03110 * 14 12 11 17 17 H 1.48498 * 109.47039 * 59.99692 * 16 14 12 18 18 H 1.48497 * 109.47224 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47209 * 299.99940 * 16 14 12 20 20 C 1.52996 * 117.50236 * 146.92295 * 11 10 9 21 21 C 1.52996 * 117.50308 * 78.25935 * 11 10 9 22 22 C 1.47015 * 110.69056 * 302.38701 * 9 8 7 23 23 C 1.53097 * 109.36305 * 59.09783 * 22 9 8 24 24 H 1.09003 * 109.51310 * 62.58240 * 23 22 9 25 25 C 1.52999 * 109.51339 * 182.74417 * 23 22 9 26 26 O 1.42383 * 110.53548 * 240.19617 * 7 2 1 27 27 H 1.08998 * 109.47058 * 303.90258 * 1 2 3 28 28 H 1.09007 * 109.46924 * 63.89731 * 1 2 3 29 29 H 1.08998 * 109.47351 * 183.89494 * 1 2 3 30 30 H 1.09003 * 110.60662 * 158.26176 * 5 4 2 31 31 H 1.09001 * 110.60668 * 281.06953 * 5 4 2 32 32 H 1.09001 * 110.92959 * 205.24131 * 6 5 4 33 33 H 1.08999 * 110.92971 * 81.57259 * 6 5 4 34 34 H 1.09004 * 109.50386 * 172.49264 * 8 7 2 35 35 H 1.08992 * 109.50430 * 52.41917 * 8 7 2 36 36 H 1.08994 * 109.47203 * 317.02954 * 10 9 8 37 37 H 1.09001 * 109.47312 * 77.02975 * 10 9 8 38 38 H 0.97006 * 120.00041 * 185.10772 * 15 14 12 39 39 H 1.09004 * 117.49300 * 359.97438 * 20 11 10 40 40 H 1.08993 * 117.50422 * 145.01609 * 20 11 10 41 41 H 1.08998 * 117.50102 * 214.98322 * 21 11 10 42 42 H 1.09002 * 117.49634 * 359.97438 * 21 11 10 43 43 H 1.09005 * 109.48981 * 179.06510 * 22 9 8 44 44 H 1.09003 * 109.48805 * 299.10642 * 22 9 8 45 45 H 1.08993 * 109.47261 * 60.00148 * 25 23 22 46 46 H 1.08999 * 109.46703 * 180.02562 * 25 23 22 47 47 H 1.09007 * 109.47103 * 299.99632 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0200 -0.7024 -1.1562 5 6 3.2374 -1.3706 -0.7596 6 6 2.9199 -1.8882 0.6677 7 6 2.0531 -0.7457 1.2367 8 6 0.8925 -1.3209 2.0412 9 7 0.1138 -0.2193 2.6284 10 6 -1.0348 -0.7325 3.3869 11 6 -2.0396 0.3981 3.6179 12 6 -1.5763 1.5026 4.5326 13 1 -1.8590 2.5252 4.3307 14 6 -0.7916 1.2075 5.6272 15 7 -0.7347 -0.0250 6.0825 16 14 0.1907 2.5584 6.4636 17 1 -0.7345 3.6094 6.9582 18 1 0.9456 1.9861 7.6071 19 1 1.1414 3.1539 5.4907 20 6 -3.5237 0.0281 3.6525 21 6 -2.9506 0.7831 2.4506 22 6 0.9679 0.6273 3.4741 23 6 2.1113 1.1977 2.6308 24 1 1.7022 1.8312 1.8437 25 6 3.0408 2.0239 3.5220 26 8 2.8463 0.1192 2.0430 27 1 -0.3633 0.5732 0.8529 28 1 -0.3633 0.4522 -0.9229 29 1 -0.3634 -1.0253 0.0698 30 1 3.4543 -2.2025 -1.4298 31 1 4.0711 -0.6687 -0.7391 32 1 3.8334 -2.0107 1.2496 33 1 2.3573 -2.8209 0.6275 34 1 1.2810 -1.9564 2.8370 35 1 0.2517 -1.9101 1.3852 36 1 -1.5130 -1.5341 2.8241 37 1 -0.6931 -1.1170 4.3479 38 1 -0.2426 -0.2196 6.8955 39 1 -3.7844 -1.0207 3.5103 40 1 -4.1651 0.5837 4.3365 41 1 -3.2152 1.8351 2.3444 42 1 -2.8339 0.2312 1.5179 43 1 0.3761 1.4452 3.8852 44 1 1.3788 0.0307 4.2885 45 1 3.4508 1.3886 4.3070 46 1 3.8542 2.4300 2.9208 47 1 2.4792 2.8421 3.9729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:25 Heat of formation + Delta-G solvation = -36.389417 kcal Electronic energy + Delta-G solvation = -27137.366987 eV Core-core repulsion = 23708.010106 eV Total energy + Delta-G solvation = -3429.356881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61486 -37.92618 -36.72275 -34.31478 -33.07292 -32.23204 -31.13443 -30.16376 -26.81089 -26.24298 -25.71132 -24.46815 -22.18652 -22.05227 -21.05223 -20.84578 -19.04985 -18.71201 -17.01226 -16.25526 -15.75436 -15.30525 -15.14321 -14.86805 -14.66047 -14.33067 -13.99636 -13.72963 -13.33507 -13.14931 -12.77988 -12.37545 -12.20920 -12.10879 -12.03695 -11.69860 -11.38949 -11.34848 -11.25288 -11.13424 -10.94465 -10.85320 -10.65636 -10.50145 -10.39757 -10.21366 -10.20512 -9.77951 -9.54453 -9.35036 -9.06832 -8.90690 -8.62691 -8.10778 -7.23291 -6.16460 -4.12138 3.15147 3.24248 3.25815 3.86244 4.15102 4.22822 4.48697 4.80825 4.90967 4.96229 5.03854 5.29220 5.39209 5.45745 5.57951 5.66320 5.69114 5.73040 5.78031 5.83608 5.91309 5.94696 6.03871 6.06941 6.15576 6.19021 6.27289 6.34689 6.39594 6.48907 6.52583 6.61246 6.68180 6.78551 6.81803 6.93793 7.05540 7.12370 7.20372 7.23925 7.38687 7.43124 7.66295 7.82259 8.04849 8.07203 8.40322 8.78650 9.35900 10.81403 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.007092 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.275665 B = 3947.020580 C = 4888.931640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.064 3.936 3 H 0.068 0.932 4 O -0.379 6.379 5 C 0.049 3.951 6 C -0.144 4.144 7 C 0.099 3.901 8 C 0.032 3.968 9 N -0.513 5.513 10 C 0.082 3.918 11 C 0.063 3.937 12 C -0.488 4.488 13 H 0.062 0.938 14 C 0.077 3.923 15 N -0.869 5.869 16 Si 0.868 3.132 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.263 1.263 20 C -0.204 4.204 21 C -0.199 4.199 22 C 0.010 3.990 23 C 0.081 3.919 24 H 0.062 0.938 25 C -0.145 4.145 26 O -0.376 6.376 27 H 0.123 0.877 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.090 0.910 38 H 0.263 0.737 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.032 0.968 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.709 -1.921 -7.845 10.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.006 3.994 3 H 0.086 0.914 4 O -0.298 6.298 5 C -0.028 4.028 6 C -0.181 4.181 7 C 0.059 3.941 8 C -0.097 4.097 9 N -0.236 5.236 10 C -0.044 4.044 11 C 0.062 3.938 12 C -0.525 4.525 13 H 0.080 0.920 14 C -0.126 4.126 15 N -0.506 5.506 16 Si 0.695 3.305 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.243 4.243 21 C -0.237 4.237 22 C -0.117 4.117 23 C 0.024 3.976 24 H 0.080 0.920 25 C -0.202 4.202 26 O -0.295 6.295 27 H 0.141 0.859 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.157 0.843 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.762 -1.800 -8.266 10.830 hybrid contribution 0.641 0.085 1.357 1.504 sum 7.403 -1.714 -6.909 10.270 Atomic orbital electron populations 1.22412 0.91872 1.03506 1.03650 1.23216 0.96761 0.95361 0.84041 0.91434 1.88902 1.39424 1.67591 1.33901 1.23481 0.88353 0.96249 0.94672 1.23055 1.00951 0.97542 0.96601 1.22298 0.90937 0.90131 0.90783 1.22624 0.94694 0.94451 0.97933 1.62410 1.08087 1.17957 1.35182 1.21826 0.90107 0.95014 0.97484 1.18788 0.86254 0.95000 0.93711 1.20457 1.30326 0.92632 1.09074 0.91977 1.24949 0.96345 0.95185 0.96147 1.69858 1.41031 1.18776 1.20891 0.87101 0.81141 0.82818 0.79466 1.20121 1.21064 1.18777 1.22949 1.02265 0.97683 1.01358 1.22784 1.09603 0.98729 0.92538 1.23487 0.93985 1.00785 0.93458 1.22403 0.92201 0.87918 0.95056 0.92002 1.21807 0.99415 0.99678 0.99321 1.87835 1.35687 1.40481 1.65541 0.85906 0.94034 0.92642 0.89332 0.92276 0.89349 0.89456 0.94912 0.90023 0.94844 0.89228 0.92616 0.92052 0.90624 0.91066 0.91292 0.84331 0.94946 0.92309 0.92446 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.28 37.16 0.31 -2.31 16 2 C 0.06 1.05 3.29 -26.42 -0.09 0.96 16 3 H 0.07 1.15 6.89 -51.93 -0.36 0.80 16 4 O -0.38 -6.05 11.20 -35.23 -0.39 -6.44 16 5 C 0.05 0.63 7.73 38.27 0.30 0.93 16 6 C -0.14 -1.93 6.44 -24.94 -0.16 -2.09 16 7 C 0.10 1.62 0.97 -89.90 -0.09 1.53 16 8 C 0.03 0.56 3.51 -3.97 -0.01 0.54 16 9 N -0.51 -10.13 1.85 -234.60 -0.43 -10.57 16 10 C 0.08 1.81 4.72 -3.82 -0.02 1.79 16 11 C 0.06 1.46 1.92 -155.66 -0.30 1.16 16 12 C -0.49 -12.15 7.03 -34.44 -0.24 -12.39 16 13 H 0.06 1.57 7.88 -52.49 -0.41 1.16 16 14 C 0.08 1.91 3.17 -17.82 -0.06 1.85 16 15 N -0.87 -22.35 10.97 55.43 0.61 -21.74 16 16 Si 0.87 19.10 28.46 -169.99 -4.84 14.26 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.26 -5.42 5.78 56.52 0.33 -5.09 16 20 C -0.20 -4.49 9.92 -26.70 -0.26 -4.75 16 21 C -0.20 -4.17 9.96 -26.70 -0.27 -4.43 16 22 C 0.01 0.21 3.47 -3.71 -0.01 0.19 16 23 C 0.08 1.48 3.13 -26.68 -0.08 1.40 16 24 H 0.06 1.12 6.85 -51.93 -0.36 0.76 16 25 C -0.14 -2.37 9.57 37.16 0.36 -2.01 16 26 O -0.38 -6.71 9.86 -35.23 -0.35 -7.06 16 27 H 0.12 2.27 5.81 -51.93 -0.30 1.97 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.91 6.18 -51.93 -0.32 0.59 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.09 1.07 7.84 -51.93 -0.41 0.66 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.37 6.14 -51.93 -0.32 1.05 16 36 H 0.03 0.70 7.85 -51.93 -0.41 0.29 16 37 H 0.09 2.22 5.49 -51.93 -0.29 1.94 16 38 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.14 3.15 3.06 -51.93 -0.16 2.99 16 44 H 0.03 0.74 8.13 -51.93 -0.42 0.32 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 1.26 6.81 -51.93 -0.35 0.91 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -25.31 342.15 -8.84 -34.15 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.96 Total: 9.87 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -0.63 Total: -17.63 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.17 Total: -32.31 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.74 Total: -13.50 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.84 Total: 14.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -25.31 -8.84 -34.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.236 kcal (2) G-P(sol) polarization free energy of solvation -25.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds