Wall clock time and date at job start Tue Mar 31 2020 07:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53136 * 1 3 3 H 1.08886 * 109.93791 * 2 1 4 4 O 1.43696 * 109.30745 * 121.04234 * 2 1 3 5 5 C 1.43813 * 110.05641 * 116.01656 * 4 2 1 6 6 C 1.55032 * 105.32448 * 339.17345 * 5 4 2 7 7 C 1.53649 * 110.22081 * 238.49701 * 2 1 3 8 8 C 1.52329 * 110.61129 * 151.37124 * 7 2 1 9 9 N 1.46986 * 110.21352 * 282.69120 * 8 7 2 10 10 C 1.46914 * 111.07937 * 178.82055 * 9 8 7 11 11 C 1.53001 * 109.46838 * 200.73557 * 10 9 8 12 12 C 1.50699 * 115.54988 * 292.96172 * 11 10 9 13 13 H 1.08002 * 119.99815 * 145.13229 * 12 11 10 14 14 C 1.37877 * 120.00088 * 325.12695 * 12 11 10 15 15 N 1.31518 * 119.99798 * 163.29508 * 14 12 11 16 16 Si 1.86799 * 119.99970 * 343.29976 * 14 12 11 17 17 H 1.48505 * 109.47108 * 95.34513 * 16 14 12 18 18 H 1.48501 * 109.46990 * 215.34286 * 16 14 12 19 19 H 1.48496 * 109.47157 * 335.34006 * 16 14 12 20 20 C 1.53004 * 117.49601 * 147.29846 * 11 10 9 21 21 C 1.52999 * 117.50100 * 78.63957 * 11 10 9 22 22 C 1.47127 * 110.09732 * 302.10577 * 9 8 7 23 23 C 1.53107 * 108.64782 * 62.17706 * 22 9 8 24 24 H 1.09140 * 109.05954 * 63.86570 * 23 22 9 25 25 C 1.53213 * 109.22742 * 182.85492 * 23 22 9 26 26 O 1.41239 * 112.06128 * 24.64544 * 7 2 1 27 27 H 1.09001 * 109.47136 * 181.51254 * 1 2 3 28 28 H 1.09002 * 109.46648 * 301.50349 * 1 2 3 29 29 H 1.08994 * 109.47468 * 61.50753 * 1 2 3 30 30 H 1.09303 * 110.62035 * 98.34088 * 5 4 2 31 31 H 1.09299 * 110.67094 * 220.03527 * 5 4 2 32 32 H 1.08677 * 111.43688 * 278.21946 * 6 5 4 33 33 H 1.08779 * 111.30555 * 152.95276 * 6 5 4 34 34 H 1.09143 * 109.42129 * 162.38649 * 8 7 2 35 35 H 1.09158 * 109.44284 * 42.94601 * 8 7 2 36 36 H 1.09000 * 109.46738 * 80.73774 * 10 9 8 37 37 H 1.08999 * 109.46847 * 320.73254 * 10 9 8 38 38 H 0.96998 * 119.99986 * 180.02562 * 15 14 12 39 39 H 1.09005 * 117.49808 * 359.97438 * 20 11 10 40 40 H 1.08995 * 117.49734 * 145.02098 * 20 11 10 41 41 H 1.08998 * 117.49632 * 214.98078 * 21 11 10 42 42 H 1.09005 * 117.49394 * 359.96807 * 21 11 10 43 43 H 1.08871 * 109.59528 * 181.97435 * 22 9 8 44 44 H 1.08910 * 109.52992 * 302.48476 * 22 9 8 45 45 H 1.08992 * 109.47445 * 60.00085 * 25 23 22 46 46 H 1.09002 * 109.47162 * 180.02562 * 25 23 22 47 47 H 1.09004 * 109.46936 * 299.99793 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 1 1.9027 1.0236 0.0000 4 8 2.0065 -0.6993 1.1619 5 6 2.7288 -1.8785 0.7668 6 6 2.2480 -2.1900 -0.6738 7 6 2.0624 -0.7534 -1.2293 8 6 3.4221 -0.2079 -1.6465 9 7 3.2603 1.0642 -2.3649 10 6 4.5631 1.6218 -2.7521 11 6 4.4183 3.1224 -3.0132 12 6 3.5829 3.4962 -4.2105 13 1 2.9696 4.3848 -4.1849 14 6 3.6015 2.7037 -5.3386 15 7 2.6542 2.8247 -6.2429 16 14 4.9721 1.4582 -5.5826 17 1 4.5247 0.1282 -5.0962 18 1 5.3093 1.3696 -7.0261 19 1 6.1718 1.8865 -4.8194 20 6 5.6145 4.0162 -2.6798 21 6 4.3644 4.0492 -1.7971 22 6 2.3991 0.8737 -3.5425 23 6 1.0141 0.4247 -3.0687 24 1 0.5652 1.2221 -2.4738 25 6 0.1270 0.1535 -4.2881 26 8 1.1294 -0.7630 -2.2896 27 1 -0.3633 -1.0273 0.0271 28 1 -0.3633 0.5370 0.8762 29 1 -0.3634 0.4902 -0.9031 30 1 3.8056 -1.6911 0.7750 31 1 2.4967 -2.7141 1.4320 32 1 1.3036 -2.7277 -0.6698 33 1 3.0099 -2.7233 -1.2380 34 1 3.9190 -0.9301 -2.2966 35 1 4.0364 -0.0457 -0.7589 36 1 4.9151 1.1278 -3.6577 37 1 5.2808 1.4606 -1.9478 38 1 2.6671 2.2669 -7.0364 39 1 6.5045 3.5351 -2.2740 40 1 5.7969 4.8747 -3.3260 41 1 3.7248 4.9294 -1.8630 42 1 4.4316 3.5897 -0.8109 43 1 2.3131 1.8121 -4.0877 44 1 2.8295 0.1099 -4.1886 45 1 0.5767 -0.6304 -4.8973 46 1 -0.8605 -0.1661 -3.9551 47 1 0.0335 1.0645 -4.8792 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:28 Heat of formation + Delta-G solvation = -31.928198 kcal Electronic energy + Delta-G solvation = -26976.160204 eV Core-core repulsion = 23546.996775 eV Total energy + Delta-G solvation = -3429.163428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65843 -38.23371 -37.02180 -34.52252 -33.10408 -32.34313 -31.15409 -30.23513 -27.90784 -26.37751 -25.90501 -24.32353 -22.51024 -21.82081 -21.32518 -21.14717 -19.39638 -18.95904 -16.68399 -16.44112 -16.05193 -15.89858 -15.46823 -15.22074 -14.67300 -14.20210 -14.02799 -13.70648 -13.37696 -13.20248 -12.93132 -12.82856 -12.58328 -12.29576 -12.17593 -12.01633 -11.99677 -11.64527 -11.50974 -11.19663 -11.12032 -10.89756 -10.79861 -10.59402 -10.44433 -10.32911 -9.97399 -9.80872 -9.53606 -9.40317 -9.21023 -9.09251 -8.80752 -8.19388 -7.53587 -6.32557 -4.16645 3.07237 3.26826 3.29009 3.63148 4.06975 4.19220 4.21084 4.56644 4.81098 4.87308 4.95646 5.10250 5.23669 5.35336 5.45102 5.56855 5.59062 5.60538 5.64805 5.67765 5.72498 5.81606 5.82408 5.92115 5.94004 5.96690 6.03212 6.09757 6.19032 6.24515 6.32259 6.34890 6.43528 6.49105 6.59681 6.62440 6.64707 6.74700 6.94463 7.08627 7.15625 7.20071 7.61641 7.66627 7.71245 7.85151 8.42436 8.78006 9.31717 10.77122 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.006887 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.508475 B = 4064.455983 C = 4635.303807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 H 0.097 0.903 4 O -0.378 6.378 5 C 0.052 3.948 6 C -0.146 4.146 7 C 0.111 3.889 8 C 0.025 3.975 9 N -0.510 5.510 10 C 0.086 3.914 11 C 0.016 3.984 12 C -0.477 4.477 13 H 0.080 0.920 14 C 0.081 3.919 15 N -0.881 5.881 16 Si 0.877 3.123 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.265 1.265 20 C -0.212 4.212 21 C -0.174 4.174 22 C -0.015 4.015 23 C 0.095 3.905 24 H 0.066 0.934 25 C -0.140 4.140 26 O -0.369 6.369 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.056 0.944 38 H 0.267 0.733 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.166 0.834 44 H 0.028 0.972 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -8.687 8.911 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.004 3.996 3 H 0.115 0.885 4 O -0.298 6.298 5 C -0.024 4.024 6 C -0.184 4.184 7 C 0.070 3.930 8 C -0.104 4.104 9 N -0.233 5.233 10 C -0.041 4.041 11 C 0.015 3.985 12 C -0.514 4.514 13 H 0.098 0.902 14 C -0.122 4.122 15 N -0.518 5.518 16 Si 0.709 3.291 17 H -0.209 1.209 18 H -0.226 1.226 19 H -0.190 1.190 20 C -0.250 4.250 21 C -0.211 4.211 22 C -0.142 4.142 23 C 0.039 3.961 24 H 0.084 0.916 25 C -0.197 4.197 26 O -0.288 6.288 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.183 0.817 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.909 -8.489 9.198 12.662 hybrid contribution 1.564 -1.249 -0.946 2.213 sum -0.346 -9.738 8.252 12.769 Atomic orbital electron populations 1.21997 0.94590 1.02175 1.02008 1.23186 0.94996 0.97108 0.84340 0.88477 1.88522 1.72981 1.38048 1.30214 1.23354 0.96213 0.88455 0.94391 1.23253 1.03030 0.96186 0.95969 1.22084 0.88835 0.94444 0.87654 1.22698 0.95924 0.92433 0.99304 1.62269 1.14133 1.22190 1.24720 1.21933 0.88967 0.95977 0.97186 1.19188 0.96524 0.87297 0.95477 1.20346 1.24744 1.10845 0.95468 0.90153 1.24916 0.94691 0.96655 0.95913 1.69971 1.30483 1.40119 1.11188 0.87210 0.84550 0.81392 0.75988 1.20942 1.22601 1.19009 1.23162 0.91930 1.04903 1.05042 1.22637 1.00950 1.02884 0.94641 1.23946 0.91498 1.06552 0.92156 1.22221 0.96191 0.85937 0.91789 0.91621 1.21772 0.98465 1.03108 0.96392 1.87184 1.59136 1.38528 1.43942 0.92599 0.92570 0.91003 0.92091 0.89970 0.89338 0.89708 0.94928 0.90225 0.95629 0.92601 0.92268 0.91718 0.89749 0.90184 0.90976 0.81657 0.95357 0.92635 0.92511 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.94 37.23 0.33 -1.82 16 2 C 0.06 0.95 3.46 -26.32 -0.09 0.86 16 3 H 0.10 1.67 7.87 -51.99 -0.41 1.26 16 4 O -0.38 -5.70 11.02 -35.23 -0.39 -6.08 16 5 C 0.05 0.63 7.32 38.23 0.28 0.91 16 6 C -0.15 -1.88 6.28 -24.53 -0.15 -2.04 16 7 C 0.11 1.76 0.79 -89.50 -0.07 1.69 16 8 C 0.03 0.44 3.89 -4.12 -0.02 0.42 16 9 N -0.51 -10.30 4.63 -234.67 -1.09 -11.38 16 10 C 0.09 1.84 4.46 -3.82 -0.02 1.82 16 11 C 0.02 0.37 1.46 -155.66 -0.23 0.15 16 12 C -0.48 -12.39 7.98 -34.44 -0.27 -12.67 16 13 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 14 C 0.08 2.12 3.17 -17.82 -0.06 2.06 16 15 N -0.88 -23.97 13.76 55.43 0.76 -23.21 16 16 Si 0.88 21.06 22.83 -169.99 -3.88 17.18 16 17 H -0.28 -6.66 5.65 56.52 0.32 -6.34 16 18 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.26 -6.27 6.92 56.52 0.39 -5.88 16 20 C -0.21 -4.39 9.92 -26.69 -0.26 -4.66 16 21 C -0.17 -3.54 9.96 -26.69 -0.27 -3.81 16 22 C -0.01 -0.32 3.42 -3.64 -0.01 -0.33 16 23 C 0.10 1.76 2.96 -26.57 -0.08 1.68 16 24 H 0.07 1.22 6.91 -51.85 -0.36 0.87 16 25 C -0.14 -2.34 9.57 37.27 0.36 -1.98 16 26 O -0.37 -6.39 8.56 -35.01 -0.30 -6.69 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.06 5.92 -51.93 -0.31 0.75 16 30 H 0.06 0.68 7.79 -51.76 -0.40 0.28 16 31 H 0.08 0.81 8.17 -51.76 -0.42 0.39 16 32 H 0.09 1.10 8.11 -52.11 -0.42 0.68 16 33 H 0.08 1.01 7.83 -52.05 -0.41 0.60 16 34 H 0.03 0.58 7.95 -51.85 -0.41 0.17 16 35 H 0.08 1.28 7.29 -51.84 -0.38 0.90 16 36 H 0.03 0.60 2.21 -51.93 -0.11 0.48 16 37 H 0.06 1.08 7.79 -51.93 -0.40 0.68 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.17 4.02 3.45 -52.00 -0.18 3.84 16 44 H 0.03 0.65 6.13 -51.98 -0.32 0.33 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -26.92 341.11 -8.31 -35.22 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.99 Total: 7.53 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.56 Total: -17.71 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.32 Total: -34.59 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.69 Total: -12.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -3.88 Total: 17.18 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.92 -8.31 -35.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.293 kcal (2) G-P(sol) polarization free energy of solvation -26.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds