Wall clock time and date at job start Tue Mar 31 2020 07:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53136 * 1 3 3 H 1.08886 * 109.93791 * 2 1 4 4 O 1.43696 * 109.30745 * 121.04234 * 2 1 3 5 5 C 1.43813 * 110.05641 * 116.01656 * 4 2 1 6 6 C 1.55032 * 105.32448 * 339.17345 * 5 4 2 7 7 C 1.53649 * 110.22081 * 238.49701 * 2 1 3 8 8 C 1.52329 * 110.61129 * 151.37124 * 7 2 1 9 9 N 1.46986 * 110.21352 * 282.69120 * 8 7 2 10 10 C 1.46914 * 111.07937 * 178.82055 * 9 8 7 11 11 C 1.53001 * 109.46838 * 200.73557 * 10 9 8 12 12 C 1.50699 * 115.54988 * 292.96172 * 11 10 9 13 13 H 1.08002 * 119.99815 * 145.13229 * 12 11 10 14 14 C 1.37877 * 120.00088 * 325.12695 * 12 11 10 15 15 N 1.31518 * 119.99798 * 163.29508 * 14 12 11 16 16 Si 1.86799 * 119.99970 * 343.29976 * 14 12 11 17 17 H 1.48505 * 109.47108 * 95.34513 * 16 14 12 18 18 H 1.48501 * 109.46990 * 215.34286 * 16 14 12 19 19 H 1.48496 * 109.47157 * 335.34006 * 16 14 12 20 20 C 1.53004 * 117.49601 * 147.29846 * 11 10 9 21 21 C 1.52999 * 117.50100 * 78.63957 * 11 10 9 22 22 C 1.47127 * 110.09732 * 302.10577 * 9 8 7 23 23 C 1.53107 * 108.64782 * 62.17706 * 22 9 8 24 24 H 1.09140 * 109.05954 * 63.86570 * 23 22 9 25 25 C 1.53213 * 109.22742 * 182.85492 * 23 22 9 26 26 O 1.41239 * 112.06128 * 24.64544 * 7 2 1 27 27 H 1.09001 * 109.47136 * 181.51254 * 1 2 3 28 28 H 1.09002 * 109.46648 * 301.50349 * 1 2 3 29 29 H 1.08994 * 109.47468 * 61.50753 * 1 2 3 30 30 H 1.09303 * 110.62035 * 98.34088 * 5 4 2 31 31 H 1.09299 * 110.67094 * 220.03527 * 5 4 2 32 32 H 1.08677 * 111.43688 * 278.21946 * 6 5 4 33 33 H 1.08779 * 111.30555 * 152.95276 * 6 5 4 34 34 H 1.09143 * 109.42129 * 162.38649 * 8 7 2 35 35 H 1.09158 * 109.44284 * 42.94601 * 8 7 2 36 36 H 1.09000 * 109.46738 * 80.73774 * 10 9 8 37 37 H 1.08999 * 109.46847 * 320.73254 * 10 9 8 38 38 H 0.96998 * 119.99986 * 180.02562 * 15 14 12 39 39 H 1.09005 * 117.49808 * 359.97438 * 20 11 10 40 40 H 1.08995 * 117.49734 * 145.02098 * 20 11 10 41 41 H 1.08998 * 117.49632 * 214.98078 * 21 11 10 42 42 H 1.09005 * 117.49394 * 359.96807 * 21 11 10 43 43 H 1.08871 * 109.59528 * 181.97435 * 22 9 8 44 44 H 1.08910 * 109.52992 * 302.48476 * 22 9 8 45 45 H 1.08992 * 109.47445 * 60.00085 * 25 23 22 46 46 H 1.09002 * 109.47162 * 180.02562 * 25 23 22 47 47 H 1.09004 * 109.46936 * 299.99793 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 1 1.9027 1.0236 0.0000 4 8 2.0065 -0.6993 1.1619 5 6 2.7288 -1.8785 0.7668 6 6 2.2480 -2.1900 -0.6738 7 6 2.0624 -0.7534 -1.2293 8 6 3.4221 -0.2079 -1.6465 9 7 3.2603 1.0642 -2.3649 10 6 4.5631 1.6218 -2.7521 11 6 4.4183 3.1224 -3.0132 12 6 3.5829 3.4962 -4.2105 13 1 2.9696 4.3848 -4.1849 14 6 3.6015 2.7037 -5.3386 15 7 2.6542 2.8247 -6.2429 16 14 4.9721 1.4582 -5.5826 17 1 4.5247 0.1282 -5.0962 18 1 5.3093 1.3696 -7.0261 19 1 6.1718 1.8865 -4.8194 20 6 5.6145 4.0162 -2.6798 21 6 4.3644 4.0492 -1.7971 22 6 2.3991 0.8737 -3.5425 23 6 1.0141 0.4247 -3.0687 24 1 0.5652 1.2221 -2.4738 25 6 0.1270 0.1535 -4.2881 26 8 1.1294 -0.7630 -2.2896 27 1 -0.3633 -1.0273 0.0271 28 1 -0.3633 0.5370 0.8762 29 1 -0.3634 0.4902 -0.9031 30 1 3.8056 -1.6911 0.7750 31 1 2.4967 -2.7141 1.4320 32 1 1.3036 -2.7277 -0.6698 33 1 3.0099 -2.7233 -1.2380 34 1 3.9190 -0.9301 -2.2966 35 1 4.0364 -0.0457 -0.7589 36 1 4.9151 1.1278 -3.6577 37 1 5.2808 1.4606 -1.9478 38 1 2.6671 2.2669 -7.0364 39 1 6.5045 3.5351 -2.2740 40 1 5.7969 4.8747 -3.3260 41 1 3.7248 4.9294 -1.8630 42 1 4.4316 3.5897 -0.8109 43 1 2.3131 1.8121 -4.0877 44 1 2.8295 0.1099 -4.1886 45 1 0.5767 -0.6304 -4.8973 46 1 -0.8605 -0.1661 -3.9551 47 1 0.0335 1.0645 -4.8792 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602819831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:27 Heat of formation + Delta-G solvation = -49.949087 kcal Electronic energy + Delta-G solvation = -26976.941648 eV Core-core repulsion = 23546.996775 eV Total energy + Delta-G solvation = -3429.944873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94085 -39.67773 -38.51618 -36.07734 -34.72029 -34.02216 -32.24794 -31.53398 -29.37318 -27.88369 -27.70503 -25.66539 -23.93915 -23.13454 -22.83414 -22.46747 -21.08458 -20.49796 -18.29606 -17.89832 -17.58377 -17.29898 -17.01452 -16.42918 -16.12344 -15.70168 -15.62339 -15.04245 -14.88603 -14.82581 -14.47105 -14.14293 -14.05851 -13.70589 -13.66825 -13.38792 -13.26704 -13.01585 -12.86399 -12.72831 -12.60614 -12.31425 -12.17503 -12.14331 -12.07504 -11.80071 -11.71537 -11.44930 -11.09182 -11.00841 -10.67901 -10.50534 -10.42688 -10.07598 -9.16103 -8.36342 -6.21290 1.15172 1.29960 1.36718 2.22524 2.36658 2.68151 2.93352 2.98479 3.37517 3.59857 3.62248 3.75228 3.93362 4.00225 4.08679 4.17101 4.18664 4.26776 4.33618 4.37965 4.42939 4.47702 4.50535 4.53734 4.57852 4.70238 4.72077 4.79597 4.83328 4.90476 4.91152 4.96731 5.00473 5.03582 5.08296 5.18739 5.23154 5.27388 5.33354 5.45407 5.55535 5.71263 5.99697 6.02270 6.19129 6.36738 6.41873 6.71997 7.28154 8.76937 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.006887 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.508475 B = 4064.455983 C = 4635.303807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.076 0.924 4 O -0.390 6.390 5 C 0.050 3.950 6 C -0.138 4.138 7 C 0.100 3.900 8 C 0.026 3.974 9 N -0.515 5.515 10 C 0.087 3.913 11 C -0.011 4.011 12 C -0.479 4.479 13 H 0.040 0.960 14 C 0.053 3.947 15 N -0.916 5.916 16 Si 0.923 3.077 17 H -0.278 1.278 18 H -0.306 1.306 19 H -0.254 1.254 20 C -0.201 4.201 21 C -0.159 4.159 22 C -0.008 4.008 23 C 0.102 3.898 24 H 0.060 0.940 25 C -0.134 4.134 26 O -0.368 6.368 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.029 0.971 35 H 0.096 0.904 36 H 0.011 0.989 37 H 0.081 0.919 38 H 0.267 0.733 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.136 0.864 44 H 0.007 0.993 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 -10.600 11.098 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.094 0.906 4 O -0.310 6.310 5 C -0.026 4.026 6 C -0.176 4.176 7 C 0.059 3.941 8 C -0.102 4.102 9 N -0.238 5.238 10 C -0.040 4.040 11 C -0.013 4.013 12 C -0.517 4.517 13 H 0.058 0.942 14 C -0.147 4.147 15 N -0.554 5.554 16 Si 0.753 3.247 17 H -0.206 1.206 18 H -0.235 1.235 19 H -0.179 1.179 20 C -0.239 4.239 21 C -0.196 4.196 22 C -0.136 4.136 23 C 0.045 3.955 24 H 0.078 0.922 25 C -0.192 4.192 26 O -0.287 6.287 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.114 0.886 36 H 0.029 0.971 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.153 0.847 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.965 -10.402 11.410 15.470 hybrid contribution 1.246 -0.600 -1.563 2.087 sum 0.281 -11.002 9.847 14.767 Atomic orbital electron populations 1.21947 0.93844 1.02622 1.01942 1.23011 0.95565 0.96151 0.84448 0.90565 1.88508 1.73437 1.39131 1.29958 1.23592 0.96559 0.88203 0.94266 1.23277 1.03886 0.94086 0.96330 1.22322 0.87753 0.96743 0.87292 1.22803 0.97217 0.90917 0.99308 1.62256 1.13541 1.24010 1.23990 1.21900 0.90014 0.94689 0.97380 1.19189 0.97874 0.88884 0.95311 1.20371 1.24698 1.09450 0.97134 0.94205 1.25301 0.95855 0.97924 0.95600 1.70058 1.31990 1.41484 1.11852 0.86469 0.82862 0.80036 0.75295 1.20596 1.23454 1.17910 1.23177 0.92427 1.03837 1.04444 1.22636 1.00422 1.01773 0.94819 1.23705 0.93319 1.04246 0.92310 1.22069 0.94666 0.86412 0.92358 0.92187 1.21712 0.99541 1.02294 0.95620 1.87188 1.59630 1.37592 1.44261 0.91876 0.91785 0.91900 0.91004 0.87244 0.88669 0.88532 0.95230 0.88578 0.97146 0.90087 0.92335 0.89119 0.90464 0.91014 0.88825 0.84674 0.97455 0.92857 0.89962 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 8.94 72.03 0.64 -3.28 16 2 C 0.07 1.93 3.46 30.86 0.11 2.04 16 3 H 0.08 2.53 7.87 -2.45 -0.02 2.51 16 4 O -0.39 -10.61 11.02 -148.98 -1.64 -12.26 16 5 C 0.05 1.00 7.32 72.68 0.53 1.54 16 6 C -0.14 -3.09 6.28 32.02 0.20 -2.88 16 7 C 0.10 2.95 0.79 -10.07 -0.01 2.94 16 8 C 0.03 0.84 3.89 86.06 0.34 1.18 16 9 N -0.51 -20.28 4.63 -896.36 -4.15 -24.43 16 10 C 0.09 3.58 4.46 86.30 0.38 3.96 16 11 C -0.01 -0.50 1.46 -52.93 -0.08 -0.58 16 12 C -0.48 -25.61 7.98 25.60 0.20 -25.40 16 13 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 14 C 0.05 2.85 3.17 84.65 0.27 3.12 16 15 N -0.92 -51.78 13.76 21.45 0.30 -51.48 16 16 Si 0.92 43.76 22.83 68.60 1.57 45.33 16 17 H -0.28 -12.94 5.65 99.48 0.56 -12.38 16 18 H -0.31 -14.71 7.11 99.48 0.71 -14.01 16 19 H -0.25 -11.51 6.92 99.48 0.69 -10.82 16 20 C -0.20 -7.91 9.92 30.62 0.30 -7.61 16 21 C -0.16 -6.25 9.96 30.62 0.30 -5.95 16 22 C -0.01 -0.36 3.42 86.30 0.29 -0.07 16 23 C 0.10 3.75 2.96 30.70 0.09 3.85 16 24 H 0.06 2.26 6.91 -2.31 -0.02 2.25 16 25 C -0.13 -4.49 9.57 72.05 0.69 -3.80 16 26 O -0.37 -12.20 8.56 -148.19 -1.27 -13.47 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.79 5.92 -2.39 -0.01 1.77 16 30 H 0.07 1.32 7.79 -2.23 -0.02 1.30 16 31 H 0.11 1.66 8.17 -2.23 -0.02 1.64 16 32 H 0.09 2.03 8.11 -2.56 -0.02 2.01 16 33 H 0.10 1.95 7.83 -2.50 -0.02 1.93 16 34 H 0.03 0.98 7.95 -2.31 -0.02 0.97 16 35 H 0.10 2.79 7.29 -2.30 -0.02 2.77 16 36 H 0.01 0.49 2.21 -2.39 -0.01 0.48 16 37 H 0.08 2.88 7.79 -2.39 -0.02 2.86 16 38 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 40 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 43 H 0.14 6.78 3.45 -2.46 -0.01 6.77 16 44 H 0.01 0.34 6.13 -2.43 -0.01 0.32 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -58.77 341.11 -0.14 -58.91 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.78 Total: 28.36 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.28 Total: -30.96 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -3.85 Total: -75.91 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -2.91 Total: -25.73 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.57 Total: 45.33 kcal Total: -58.77 -0.14 -58.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.962 kcal (2) G-P(sol) polarization free energy of solvation -58.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds