Wall clock time and date at job start Tue Mar 31 2020 07:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.89770 * 2 1 4 4 O 1.43897 * 109.90835 * 121.26681 * 2 1 3 5 5 C 1.44424 * 107.00020 * 145.73226 * 4 2 1 6 6 C 1.55106 * 103.55577 * 320.27038 * 5 4 2 7 7 C 1.53577 * 109.91207 * 238.91500 * 2 1 3 8 8 C 1.52477 * 110.45977 * 356.93160 * 7 2 1 9 9 N 1.47126 * 109.31479 * 178.09287 * 8 7 2 10 10 C 1.46900 * 111.00174 * 178.71632 * 9 8 7 11 11 C 1.52994 * 109.46949 * 176.82790 * 10 9 8 12 12 C 1.50701 * 115.54992 * 53.72699 * 11 10 9 13 13 H 1.07994 * 119.99988 * 215.23502 * 12 11 10 14 14 C 1.37873 * 120.00063 * 35.51466 * 12 11 10 15 15 N 1.31514 * 120.00020 * 357.04368 * 14 12 11 16 16 Si 1.86804 * 120.00340 * 177.04884 * 14 12 11 17 17 H 1.48496 * 109.47307 * 94.99034 * 16 14 12 18 18 H 1.48499 * 109.47093 * 214.99435 * 16 14 12 19 19 H 1.48502 * 109.46708 * 334.98955 * 16 14 12 20 20 C 1.53007 * 117.49625 * 199.39047 * 11 10 9 21 21 C 1.52998 * 117.50400 * 268.05448 * 11 10 9 22 22 C 1.47025 * 110.67413 * 302.43587 * 9 8 7 23 23 C 1.53104 * 109.37214 * 59.11412 * 22 9 8 24 24 H 1.08998 * 109.56403 * 62.56513 * 23 22 9 25 25 C 1.53001 * 109.51705 * 182.71155 * 23 22 9 26 26 O 1.42311 * 110.57132 * 119.97473 * 7 2 1 27 27 H 1.09007 * 109.46760 * 181.08053 * 1 2 3 28 28 H 1.08995 * 109.47357 * 301.08236 * 1 2 3 29 29 H 1.09003 * 109.47009 * 61.09026 * 1 2 3 30 30 H 1.09004 * 110.60409 * 78.78385 * 5 4 2 31 31 H 1.09001 * 110.61083 * 201.59250 * 5 4 2 32 32 H 1.08997 * 110.92687 * 278.44977 * 6 5 4 33 33 H 1.08999 * 110.93088 * 154.78781 * 6 5 4 34 34 H 1.09005 * 109.49323 * 58.14227 * 8 7 2 35 35 H 1.08994 * 109.52519 * 298.06352 * 8 7 2 36 36 H 1.08999 * 109.46740 * 56.83321 * 10 9 8 37 37 H 1.08997 * 109.46784 * 296.83135 * 10 9 8 38 38 H 0.96996 * 120.00395 * 175.00217 * 15 14 12 39 39 H 1.09001 * 117.49443 * 215.00716 * 20 11 10 40 40 H 1.08997 * 117.50044 * 0.02973 * 20 11 10 41 41 H 1.09001 * 117.49744 * 359.97438 * 21 11 10 42 42 H 1.08996 * 117.50621 * 144.98003 * 21 11 10 43 43 H 1.08997 * 109.48812 * 179.08091 * 22 9 8 44 44 H 1.08996 * 109.49039 * 299.14514 * 22 9 8 45 45 H 1.09004 * 109.46652 * 184.66675 * 25 23 22 46 46 H 1.08990 * 109.47132 * 304.66673 * 25 23 22 47 47 H 1.09001 * 109.47380 * 64.67322 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0200 -0.7022 1.1565 5 6 3.2369 -1.3713 0.7600 6 6 2.9189 -1.8889 -0.6672 7 6 2.0530 -0.7455 -1.2366 8 6 0.8933 -1.3206 -2.0424 9 7 1.4191 -1.9888 -3.2431 10 6 0.3327 -2.5839 -4.0327 11 6 0.9083 -3.1992 -5.3097 12 6 2.0328 -4.1820 -5.1080 13 1 2.8396 -4.2339 -5.8240 14 6 2.0286 -5.0190 -4.0124 15 7 1.0742 -4.9200 -3.1130 16 14 3.3784 -6.2936 -3.8054 17 1 4.4498 -5.7434 -2.9367 18 1 2.8132 -7.5162 -3.1802 19 1 3.9454 -6.6345 -5.1350 20 6 -0.0587 -3.4597 -6.4665 21 6 0.9564 -2.3176 -6.5592 22 6 2.2082 -1.0512 -4.0553 23 6 3.3697 -0.5077 -3.2189 24 1 4.0297 -1.3273 -2.9348 25 6 4.1534 0.5192 -4.0387 26 8 2.8492 0.1172 -2.0410 27 1 -0.3633 -1.0276 0.0194 28 1 -0.3634 0.5305 0.8801 29 1 -0.3633 0.4968 -0.8996 30 1 4.0705 -0.6692 0.7365 31 1 3.4549 -2.2013 1.4320 32 1 2.3553 -2.8210 -0.6266 33 1 3.8322 -2.0127 -1.2490 34 1 0.2217 -0.5149 -2.3390 35 1 0.3490 -2.0423 -1.4333 36 1 -0.3905 -1.8119 -4.2954 37 1 -0.1602 -3.3591 -3.4460 38 1 1.0297 -5.5550 -2.3811 39 1 0.1185 -4.3420 -7.0815 40 1 -1.1049 -3.1923 -6.3178 41 1 0.5774 -1.2993 -6.4716 42 1 1.8014 -2.4481 -7.2353 43 1 2.6013 -1.5695 -4.9299 44 1 1.5737 -0.2251 -4.3765 45 1 5.0274 0.8442 -3.4741 46 1 4.4745 0.0666 -4.9767 47 1 3.5167 1.3785 -4.2491 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:31 Heat of formation + Delta-G solvation = -45.204179 kcal Electronic energy + Delta-G solvation = -26836.075315 eV Core-core repulsion = 23406.336197 eV Total energy + Delta-G solvation = -3429.739118 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.48476 -38.00295 -36.75593 -34.14566 -33.00079 -32.04990 -31.29934 -30.17790 -26.66512 -26.22652 -25.43127 -24.66398 -22.61972 -21.89682 -21.26330 -20.48577 -18.86373 -18.62687 -16.90345 -16.32202 -15.59241 -15.49804 -15.15977 -14.83603 -14.67238 -14.28182 -13.87463 -13.52654 -13.34737 -12.87916 -12.78871 -12.67268 -12.26076 -12.18298 -11.98655 -11.96631 -11.43891 -11.36895 -11.22695 -10.99457 -10.95006 -10.78470 -10.65847 -10.48156 -10.43778 -10.38662 -10.01577 -9.87476 -9.53823 -9.38984 -8.99723 -8.80358 -8.59852 -8.10405 -7.14169 -5.85792 -3.96802 3.30312 3.38336 3.41148 3.86741 4.05094 4.43197 4.59411 4.89564 5.10877 5.12510 5.18852 5.32271 5.40534 5.48355 5.48970 5.58314 5.64525 5.70622 5.75552 5.80657 5.91299 5.94834 5.98642 6.07427 6.08687 6.12587 6.22993 6.29471 6.32263 6.39960 6.40983 6.51574 6.55560 6.62985 6.64900 6.70723 6.77245 6.91446 7.01367 7.17248 7.30031 7.60942 7.69318 8.02198 8.15255 8.22282 8.52395 8.97979 9.64377 11.09763 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.006856 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.522065 B = 4082.841926 C = 4624.953552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.089 3.911 3 H 0.075 0.925 4 O -0.375 6.375 5 C 0.046 3.954 6 C -0.161 4.161 7 C 0.099 3.901 8 C 0.042 3.958 9 N -0.485 5.485 10 C 0.110 3.890 11 C 0.063 3.937 12 C -0.480 4.480 13 H 0.053 0.947 14 C 0.090 3.910 15 N -0.863 5.863 16 Si 0.886 3.114 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.208 4.208 21 C -0.220 4.220 22 C 0.030 3.970 23 C 0.086 3.914 24 H 0.068 0.932 25 C -0.140 4.140 26 O -0.378 6.378 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.026 0.974 35 H 0.086 0.914 36 H -0.022 1.022 37 H 0.121 0.879 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.016 0.984 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 8.576 4.186 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.031 3.969 3 H 0.093 0.907 4 O -0.294 6.294 5 C -0.030 4.030 6 C -0.199 4.199 7 C 0.058 3.942 8 C -0.086 4.086 9 N -0.207 5.207 10 C -0.016 4.016 11 C 0.062 3.938 12 C -0.517 4.517 13 H 0.071 0.929 14 C -0.114 4.114 15 N -0.500 5.500 16 Si 0.714 3.286 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.247 4.247 21 C -0.257 4.257 22 C -0.099 4.099 23 C 0.029 3.971 24 H 0.086 0.914 25 C -0.198 4.198 26 O -0.298 6.298 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.104 0.896 36 H -0.004 1.004 37 H 0.138 0.862 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.034 0.966 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.930 8.324 4.813 9.807 hybrid contribution 0.223 -0.294 -0.640 0.739 sum 2.153 8.030 4.173 9.302 Atomic orbital electron populations 1.22005 0.93295 1.03376 1.02104 1.22467 0.94942 0.95848 0.83619 0.90718 1.88886 1.40244 1.67586 1.32691 1.23582 0.87331 0.96001 0.96109 1.23499 1.01492 0.99692 0.95191 1.22286 0.91342 0.89627 0.90904 1.22654 0.94706 0.96896 0.94357 1.62019 1.24101 1.29070 1.05553 1.21847 0.89435 0.95613 0.94729 1.19007 0.95516 0.94669 0.84620 1.20277 1.05843 1.18075 1.07485 0.92882 1.24739 0.95362 0.96697 0.94633 1.69814 1.32563 1.34571 1.13028 0.86705 0.82540 0.81265 0.78052 1.20776 1.21422 1.20285 1.23011 0.94176 0.98845 1.08682 1.22984 1.01847 0.93833 1.07049 1.22796 0.95032 0.94218 0.97835 1.22280 0.95139 0.94871 0.84793 0.91402 1.21713 0.99599 0.98993 0.99451 1.87767 1.67957 1.38205 1.35836 0.91137 0.92109 0.90983 0.92547 0.89252 0.88610 0.89731 0.95610 0.89612 1.00384 0.86187 0.93414 0.90454 0.91988 0.91955 0.90839 0.88026 0.96556 0.92409 0.90908 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.39 37.16 0.31 -1.73 16 2 C 0.09 1.38 3.88 -26.43 -0.10 1.27 16 3 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 4 O -0.37 -6.04 11.20 -35.23 -0.39 -6.43 16 5 C 0.05 0.68 7.73 38.27 0.30 0.98 16 6 C -0.16 -2.74 5.98 -24.93 -0.15 -2.89 16 7 C 0.10 1.68 0.99 -89.90 -0.09 1.59 16 8 C 0.04 0.78 3.05 -3.97 -0.01 0.77 16 9 N -0.48 -10.09 4.00 -234.60 -0.94 -11.03 16 10 C 0.11 2.50 4.06 -3.83 -0.02 2.48 16 11 C 0.06 1.47 1.15 -155.66 -0.18 1.29 16 12 C -0.48 -12.31 8.26 -34.44 -0.28 -12.60 16 13 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 14 C 0.09 2.29 5.29 -17.82 -0.09 2.20 16 15 N -0.86 -22.21 10.18 55.43 0.56 -21.65 16 16 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.21 -4.59 9.96 -26.68 -0.27 -4.86 16 21 C -0.22 -4.62 8.25 -26.69 -0.22 -4.84 16 22 C 0.03 0.57 4.16 -3.70 -0.02 0.56 16 23 C 0.09 1.49 3.15 -26.68 -0.08 1.40 16 24 H 0.07 1.25 6.40 -51.93 -0.33 0.91 16 25 C -0.14 -1.96 9.57 37.16 0.36 -1.60 16 26 O -0.38 -6.61 9.86 -35.23 -0.35 -6.96 16 27 H 0.07 1.00 6.75 -51.92 -0.35 0.64 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.93 6.78 -51.93 -0.35 0.58 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.10 1.82 7.77 -51.93 -0.40 1.41 16 33 H 0.08 1.49 6.21 -51.93 -0.32 1.17 16 34 H 0.03 0.47 6.58 -51.93 -0.34 0.13 16 35 H 0.09 1.64 6.85 -51.93 -0.36 1.28 16 36 H -0.02 -0.48 8.08 -51.93 -0.42 -0.90 16 37 H 0.12 3.00 5.96 -51.93 -0.31 2.69 16 38 H 0.26 6.43 8.32 -40.82 -0.34 6.09 16 39 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.10 2.13 5.55 -51.93 -0.29 1.84 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -26.16 350.56 -9.49 -35.65 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.09 Total: 5.71 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.55 Total: -15.98 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: -0.37 Total: -32.68 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.74 Total: -13.39 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.16 -9.49 -35.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.553 kcal (2) G-P(sol) polarization free energy of solvation -26.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds