Wall clock time and date at job start Tue Mar 31 2020 07:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.89770 * 2 1 4 4 O 1.43897 * 109.90835 * 121.26681 * 2 1 3 5 5 C 1.44424 * 107.00020 * 145.73226 * 4 2 1 6 6 C 1.55106 * 103.55577 * 320.27038 * 5 4 2 7 7 C 1.53577 * 109.91207 * 238.91500 * 2 1 3 8 8 C 1.52477 * 110.45977 * 356.93160 * 7 2 1 9 9 N 1.47126 * 109.31479 * 178.09287 * 8 7 2 10 10 C 1.46900 * 111.00174 * 178.71632 * 9 8 7 11 11 C 1.52994 * 109.46949 * 176.82790 * 10 9 8 12 12 C 1.50701 * 115.54992 * 53.72699 * 11 10 9 13 13 H 1.07994 * 119.99988 * 215.23502 * 12 11 10 14 14 C 1.37873 * 120.00063 * 35.51466 * 12 11 10 15 15 N 1.31514 * 120.00020 * 357.04368 * 14 12 11 16 16 Si 1.86804 * 120.00340 * 177.04884 * 14 12 11 17 17 H 1.48496 * 109.47307 * 94.99034 * 16 14 12 18 18 H 1.48499 * 109.47093 * 214.99435 * 16 14 12 19 19 H 1.48502 * 109.46708 * 334.98955 * 16 14 12 20 20 C 1.53007 * 117.49625 * 199.39047 * 11 10 9 21 21 C 1.52998 * 117.50400 * 268.05448 * 11 10 9 22 22 C 1.47025 * 110.67413 * 302.43587 * 9 8 7 23 23 C 1.53104 * 109.37214 * 59.11412 * 22 9 8 24 24 H 1.08998 * 109.56403 * 62.56513 * 23 22 9 25 25 C 1.53001 * 109.51705 * 182.71155 * 23 22 9 26 26 O 1.42311 * 110.57132 * 119.97473 * 7 2 1 27 27 H 1.09007 * 109.46760 * 181.08053 * 1 2 3 28 28 H 1.08995 * 109.47357 * 301.08236 * 1 2 3 29 29 H 1.09003 * 109.47009 * 61.09026 * 1 2 3 30 30 H 1.09004 * 110.60409 * 78.78385 * 5 4 2 31 31 H 1.09001 * 110.61083 * 201.59250 * 5 4 2 32 32 H 1.08997 * 110.92687 * 278.44977 * 6 5 4 33 33 H 1.08999 * 110.93088 * 154.78781 * 6 5 4 34 34 H 1.09005 * 109.49323 * 58.14227 * 8 7 2 35 35 H 1.08994 * 109.52519 * 298.06352 * 8 7 2 36 36 H 1.08999 * 109.46740 * 56.83321 * 10 9 8 37 37 H 1.08997 * 109.46784 * 296.83135 * 10 9 8 38 38 H 0.96996 * 120.00395 * 175.00217 * 15 14 12 39 39 H 1.09001 * 117.49443 * 215.00716 * 20 11 10 40 40 H 1.08997 * 117.50044 * 0.02973 * 20 11 10 41 41 H 1.09001 * 117.49744 * 359.97438 * 21 11 10 42 42 H 1.08996 * 117.50621 * 144.98003 * 21 11 10 43 43 H 1.08997 * 109.48812 * 179.08091 * 22 9 8 44 44 H 1.08996 * 109.49039 * 299.14514 * 22 9 8 45 45 H 1.09004 * 109.46652 * 184.66675 * 25 23 22 46 46 H 1.08990 * 109.47132 * 304.66673 * 25 23 22 47 47 H 1.09001 * 109.47380 * 64.67322 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0200 -0.7022 1.1565 5 6 3.2369 -1.3713 0.7600 6 6 2.9189 -1.8889 -0.6672 7 6 2.0530 -0.7455 -1.2366 8 6 0.8933 -1.3206 -2.0424 9 7 1.4191 -1.9888 -3.2431 10 6 0.3327 -2.5839 -4.0327 11 6 0.9083 -3.1992 -5.3097 12 6 2.0328 -4.1820 -5.1080 13 1 2.8396 -4.2339 -5.8240 14 6 2.0286 -5.0190 -4.0124 15 7 1.0742 -4.9200 -3.1130 16 14 3.3784 -6.2936 -3.8054 17 1 4.4498 -5.7434 -2.9367 18 1 2.8132 -7.5162 -3.1802 19 1 3.9454 -6.6345 -5.1350 20 6 -0.0587 -3.4597 -6.4665 21 6 0.9564 -2.3176 -6.5592 22 6 2.2082 -1.0512 -4.0553 23 6 3.3697 -0.5077 -3.2189 24 1 4.0297 -1.3273 -2.9348 25 6 4.1534 0.5192 -4.0387 26 8 2.8492 0.1172 -2.0410 27 1 -0.3633 -1.0276 0.0194 28 1 -0.3634 0.5305 0.8801 29 1 -0.3633 0.4968 -0.8996 30 1 4.0705 -0.6692 0.7365 31 1 3.4549 -2.2013 1.4320 32 1 2.3553 -2.8210 -0.6266 33 1 3.8322 -2.0127 -1.2490 34 1 0.2217 -0.5149 -2.3390 35 1 0.3490 -2.0423 -1.4333 36 1 -0.3905 -1.8119 -4.2954 37 1 -0.1602 -3.3591 -3.4460 38 1 1.0297 -5.5550 -2.3811 39 1 0.1185 -4.3420 -7.0815 40 1 -1.1049 -3.1923 -6.3178 41 1 0.5774 -1.2993 -6.4716 42 1 1.8014 -2.4481 -7.2353 43 1 2.6013 -1.5695 -4.9299 44 1 1.5737 -0.2251 -4.3765 45 1 5.0274 0.8442 -3.4741 46 1 4.4745 0.0666 -4.9767 47 1 3.5167 1.3785 -4.2491 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602819832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:30 Heat of formation + Delta-G solvation = -59.894613 kcal Electronic energy + Delta-G solvation = -26836.712340 eV Core-core repulsion = 23406.336197 eV Total energy + Delta-G solvation = -3430.376143 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85112 -39.48163 -38.33991 -35.71934 -34.32165 -34.00175 -32.51749 -31.51911 -28.23905 -27.64521 -27.29549 -25.99476 -23.96333 -23.42282 -22.96062 -21.81131 -20.70837 -20.04258 -18.23131 -18.12260 -17.02494 -16.84466 -16.65260 -16.38030 -16.22050 -15.81382 -15.55270 -14.97391 -14.82285 -14.50361 -14.20350 -14.08517 -13.51858 -13.43491 -13.33992 -13.26812 -13.10286 -12.93933 -12.82536 -12.63552 -12.38876 -12.30585 -12.23688 -12.09948 -11.96507 -11.86919 -11.71941 -11.35877 -11.17050 -10.74887 -10.67273 -10.54643 -10.29095 -9.97514 -8.76131 -7.80419 -5.96792 1.43970 1.48576 1.54401 2.51317 2.54282 2.82920 3.02611 3.30413 3.58730 3.72334 3.76759 3.89712 4.02647 4.13695 4.19027 4.21959 4.31989 4.35631 4.42292 4.48345 4.52586 4.58769 4.63057 4.69195 4.73800 4.79231 4.82576 4.84792 4.90588 4.94461 4.96321 5.02680 5.09910 5.13696 5.15500 5.21639 5.25527 5.30670 5.43408 5.54585 5.70050 5.78447 6.10311 6.29767 6.41918 6.56151 6.68161 7.01639 7.64975 9.11659 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.006856 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.522065 B = 4082.841926 C = 4624.953552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.091 3.909 3 H 0.084 0.916 4 O -0.384 6.384 5 C 0.052 3.948 6 C -0.160 4.160 7 C 0.098 3.902 8 C 0.049 3.951 9 N -0.500 5.500 10 C 0.122 3.878 11 C 0.038 3.962 12 C -0.492 4.492 13 H 0.040 0.960 14 C 0.056 3.944 15 N -0.874 5.874 16 Si 0.932 3.068 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.279 1.279 20 C -0.210 4.210 21 C -0.196 4.196 22 C 0.036 3.964 23 C 0.088 3.912 24 H 0.053 0.947 25 C -0.133 4.133 26 O -0.377 6.377 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.073 0.927 36 H -0.020 1.020 37 H 0.094 0.906 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.017 0.983 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 9.999 4.515 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.102 0.898 4 O -0.304 6.304 5 C -0.024 4.024 6 C -0.198 4.198 7 C 0.058 3.942 8 C -0.080 4.080 9 N -0.223 5.223 10 C -0.005 4.005 11 C 0.037 3.963 12 C -0.529 4.529 13 H 0.058 0.942 14 C -0.146 4.146 15 N -0.511 5.511 16 Si 0.760 3.240 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.248 4.248 21 C -0.233 4.233 22 C -0.092 4.092 23 C 0.031 3.969 24 H 0.071 0.929 25 C -0.190 4.190 26 O -0.296 6.296 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.091 0.909 36 H -0.002 1.002 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.533 9.751 5.138 11.309 hybrid contribution 0.023 -0.756 -0.769 1.079 sum 2.556 8.995 4.368 10.321 Atomic orbital electron populations 1.21988 0.92070 1.03069 1.03310 1.22536 0.95935 0.95768 0.82440 0.89828 1.88878 1.40796 1.67755 1.32939 1.23643 0.87320 0.96761 0.94713 1.23393 1.00692 0.98742 0.96959 1.22339 0.90725 0.89913 0.91273 1.22606 0.95396 0.96505 0.93456 1.61929 1.23904 1.30303 1.06166 1.21558 0.89817 0.94925 0.94200 1.19059 0.95798 0.95691 0.85760 1.20391 1.06253 1.18952 1.07353 0.94153 1.25210 0.96793 0.97970 0.94634 1.69948 1.33337 1.34746 1.13050 0.85978 0.80727 0.79613 0.77643 1.20825 1.21416 1.20405 1.23021 0.94855 0.99254 1.07704 1.22920 1.01276 0.94087 1.05048 1.22721 0.95428 0.93546 0.97516 1.22309 0.94224 0.95595 0.84802 0.92890 1.21695 0.99750 0.98184 0.99420 1.87778 1.67853 1.38177 1.35825 0.92224 0.90222 0.90429 0.91046 0.87600 0.91201 0.90609 0.95073 0.90891 1.00212 0.88846 0.93757 0.91021 0.90886 0.90499 0.90568 0.89742 0.96522 0.90824 0.90035 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 8.39 71.98 0.60 -3.16 16 2 C 0.09 2.65 3.88 30.79 0.12 2.77 16 3 H 0.08 2.31 7.96 -2.39 -0.02 2.29 16 4 O -0.38 -11.70 11.20 -148.98 -1.67 -13.36 16 5 C 0.05 1.44 7.73 72.70 0.56 2.00 16 6 C -0.16 -5.41 5.98 31.76 0.19 -5.22 16 7 C 0.10 3.24 0.99 -10.33 -0.01 3.23 16 8 C 0.05 1.80 3.05 86.09 0.26 2.06 16 9 N -0.50 -20.94 4.00 -896.15 -3.58 -24.52 16 10 C 0.12 5.58 4.06 86.30 0.35 5.93 16 11 C 0.04 1.76 1.15 -52.93 -0.06 1.70 16 12 C -0.49 -25.49 8.26 25.60 0.21 -25.28 16 13 H 0.04 2.14 7.81 -2.91 -0.02 2.12 16 14 C 0.06 2.91 5.29 84.65 0.45 3.36 16 15 N -0.87 -45.78 10.18 21.45 0.22 -45.57 16 16 Si 0.93 42.27 29.54 68.60 2.03 44.30 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C -0.21 -9.11 9.96 30.62 0.30 -8.81 16 21 C -0.20 -8.03 8.25 30.62 0.25 -7.78 16 22 C 0.04 1.38 4.16 86.31 0.36 1.74 16 23 C 0.09 2.94 3.15 30.63 0.10 3.03 16 24 H 0.05 1.93 6.40 -2.39 -0.02 1.92 16 25 C -0.13 -3.42 9.57 71.98 0.69 -2.73 16 26 O -0.38 -12.58 9.86 -148.98 -1.47 -14.05 16 27 H 0.06 1.65 6.75 -2.38 -0.02 1.63 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.88 6.78 -2.39 -0.02 1.87 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.71 7.77 -2.39 -0.02 2.69 16 33 H 0.08 2.67 6.21 -2.39 -0.01 2.65 16 34 H 0.03 1.11 6.58 -2.38 -0.02 1.10 16 35 H 0.07 2.86 6.85 -2.39 -0.02 2.84 16 36 H -0.02 -0.88 8.08 -2.39 -0.02 -0.90 16 37 H 0.09 4.78 5.96 -2.39 -0.01 4.77 16 38 H 0.25 12.95 8.32 -92.71 -0.77 12.18 16 39 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.08 3.51 5.55 -2.39 -0.01 3.49 16 44 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -54.85 350.56 0.84 -54.02 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.93 Total: 26.33 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 4.38 Total: -27.14 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -3.36 Total: -70.08 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -3.14 Total: -27.42 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -54.85 0.84 -54.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.879 kcal (2) G-P(sol) polarization free energy of solvation -54.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds