Wall clock time and date at job start Tue Mar 31 2020 07:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.84989 * 2 1 4 4 O 1.43423 * 109.85390 * 239.04921 * 2 1 3 5 5 C 1.43724 * 109.93507 * 242.58790 * 4 2 1 6 6 C 1.55069 * 105.19701 * 335.69208 * 5 4 2 7 7 C 1.53663 * 109.96730 * 121.03287 * 2 1 3 8 8 C 1.52254 * 110.76910 * 258.00048 * 7 2 1 9 9 N 1.47169 * 109.33369 * 178.62829 * 8 7 2 10 10 C 1.46899 * 110.99780 * 179.06476 * 9 8 7 11 11 C 1.52996 * 109.47545 * 58.12960 * 10 9 8 12 12 C 1.50699 * 115.54947 * 294.41892 * 11 10 9 13 13 H 1.08002 * 120.00348 * 127.37868 * 12 11 10 14 14 C 1.37879 * 120.00186 * 307.37974 * 12 11 10 15 15 N 1.31511 * 119.99694 * 1.86845 * 14 12 11 16 16 Si 1.86796 * 120.00236 * 181.86431 * 14 12 11 17 17 H 1.48495 * 109.47080 * 95.04311 * 16 14 12 18 18 H 1.48498 * 109.47102 * 215.04797 * 16 14 12 19 19 H 1.48504 * 109.47149 * 335.04704 * 16 14 12 20 20 C 1.52995 * 117.49897 * 148.74623 * 11 10 9 21 21 C 1.52998 * 117.49636 * 80.08464 * 11 10 9 22 22 C 1.47010 * 110.65272 * 302.76632 * 9 8 7 23 23 C 1.53104 * 109.41220 * 59.23446 * 22 9 8 24 24 H 1.09007 * 109.52360 * 62.40666 * 23 22 9 25 25 C 1.52999 * 109.52629 * 182.59335 * 23 22 9 26 26 O 1.42060 * 110.94519 * 22.13355 * 7 2 1 27 27 H 1.08999 * 109.46836 * 179.50172 * 1 2 3 28 28 H 1.09003 * 109.46426 * 299.49985 * 1 2 3 29 29 H 1.09001 * 109.47424 * 59.49786 * 1 2 3 30 30 H 1.08995 * 110.29524 * 94.62279 * 5 4 2 31 31 H 1.08997 * 110.29531 * 216.75856 * 5 4 2 32 32 H 1.09003 * 111.13554 * 277.87606 * 6 5 4 33 33 H 1.09004 * 111.13069 * 153.68791 * 6 5 4 34 34 H 1.08995 * 109.49283 * 298.59173 * 8 7 2 35 35 H 1.09001 * 109.49013 * 58.67601 * 8 7 2 36 36 H 1.09006 * 109.46976 * 178.13297 * 10 9 8 37 37 H 1.09005 * 109.47052 * 298.12382 * 10 9 8 38 38 H 0.97001 * 120.00095 * 183.38098 * 15 14 12 39 39 H 1.09001 * 117.50521 * 0.02562 * 20 11 10 40 40 H 1.09007 * 117.49763 * 145.02168 * 20 11 10 41 41 H 1.08997 * 117.49872 * 214.97818 * 21 11 10 42 42 H 1.09000 * 117.50224 * 359.97438 * 21 11 10 43 43 H 1.08996 * 109.48516 * 299.25221 * 22 9 8 44 44 H 1.09005 * 109.48467 * 179.21450 * 22 9 8 45 45 H 1.08995 * 109.47484 * 182.44522 * 25 23 22 46 46 H 1.09003 * 109.46622 * 302.44429 * 25 23 22 47 47 H 1.08995 * 109.46986 * 62.44065 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9002 1.0253 0.0000 4 8 2.0171 -0.6938 -1.1569 5 6 2.7686 -1.8508 -0.7541 6 6 3.2614 -1.5357 0.6820 7 6 2.0548 -0.7446 1.2375 8 6 2.5173 0.2391 2.3036 9 7 2.9819 -0.5055 3.4850 10 6 3.4583 0.4100 4.5304 11 6 2.3323 1.3697 4.9200 12 6 1.8920 2.3267 3.8424 13 1 0.8477 2.3973 3.5765 14 6 2.8225 3.1124 3.1959 15 7 4.0985 3.0002 3.4938 16 14 2.2708 4.3360 1.8968 17 1 2.0980 5.6735 2.5183 18 1 3.2960 4.4166 0.8255 19 1 0.9796 3.8906 1.3138 20 6 2.2986 1.8694 6.3656 21 6 1.2632 0.8503 5.8834 22 6 1.9182 -1.3817 3.9969 23 6 1.5003 -2.3675 2.9024 24 1 2.3479 -3.0003 2.6391 25 6 0.3492 -3.2379 3.4106 26 8 1.0731 -1.6353 1.7484 27 1 -0.3633 -1.0276 -0.0089 28 1 -0.3632 0.5061 0.8945 29 1 -0.3634 0.5216 -0.8854 30 1 2.1297 -2.7338 -0.7495 31 1 3.6177 -2.0011 -1.4209 32 1 4.1604 -0.9196 0.6627 33 1 3.4267 -2.4511 1.2504 34 1 3.3343 0.8441 1.9104 35 1 1.6873 0.8870 2.5853 36 1 3.7647 -0.1647 5.4045 37 1 4.3079 0.9801 4.1544 38 1 4.7478 3.5866 3.0749 39 1 3.0789 1.5149 7.0391 40 1 1.9576 2.8905 6.5374 41 1 0.2416 1.2012 5.7382 42 1 1.3619 -0.1752 6.2394 43 1 1.0592 -0.7780 4.2896 44 1 2.2865 -1.9336 4.8617 45 1 0.0813 -3.9681 2.6470 46 1 0.6595 -3.7575 4.3172 47 1 -0.5131 -2.6083 3.6298 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:34 Heat of formation + Delta-G solvation = -50.944536 kcal Electronic energy + Delta-G solvation = -27213.837946 eV Core-core repulsion = 23783.849907 eV Total energy + Delta-G solvation = -3429.988039 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40862 -38.12195 -36.76676 -33.77521 -32.95137 -32.18920 -31.11020 -30.08223 -27.16609 -26.64647 -25.55475 -24.18229 -22.28078 -21.78482 -21.25041 -20.56180 -19.15881 -18.75285 -16.58538 -16.37680 -15.94087 -15.36345 -15.04843 -14.65582 -14.31668 -14.24484 -13.92318 -13.55648 -13.36885 -13.09023 -12.70826 -12.45799 -12.32644 -12.09011 -11.95904 -11.63235 -11.58272 -11.38617 -11.21809 -11.13794 -10.94734 -10.75508 -10.70485 -10.59327 -10.41942 -10.29351 -10.01705 -9.80696 -9.48538 -9.21981 -8.97187 -8.89590 -8.82553 -8.16864 -7.25831 -6.15921 -4.12708 3.18613 3.28838 3.30940 3.95125 4.17230 4.26591 4.65692 4.94487 5.01167 5.18808 5.28166 5.32844 5.36729 5.51378 5.56326 5.63608 5.69281 5.78549 5.87562 5.89239 5.93768 6.00531 6.06282 6.11016 6.14474 6.24822 6.29330 6.36160 6.38474 6.45286 6.47386 6.55084 6.60719 6.66429 6.68965 6.82463 6.93905 7.18182 7.28129 7.32186 7.41929 7.49706 7.74777 7.79261 8.02858 8.10440 8.34863 8.73920 9.38095 10.86867 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.008672 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.254177 B = 3227.930563 C = 4451.368426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.093 3.907 3 H 0.090 0.910 4 O -0.383 6.383 5 C 0.053 3.947 6 C -0.169 4.169 7 C 0.092 3.908 8 C 0.030 3.970 9 N -0.522 5.522 10 C 0.087 3.913 11 C 0.023 3.977 12 C -0.483 4.483 13 H 0.060 0.940 14 C 0.074 3.926 15 N -0.873 5.873 16 Si 0.877 3.123 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.191 4.191 21 C -0.210 4.210 22 C 0.017 3.983 23 C 0.088 3.912 24 H 0.058 0.942 25 C -0.141 4.141 26 O -0.363 6.363 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.033 0.967 37 H 0.117 0.883 38 H 0.263 0.737 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 -9.427 -2.792 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.108 0.892 4 O -0.303 6.303 5 C -0.023 4.023 6 C -0.206 4.206 7 C 0.052 3.948 8 C -0.098 4.098 9 N -0.244 5.244 10 C -0.040 4.040 11 C 0.022 3.978 12 C -0.521 4.521 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.510 5.510 16 Si 0.704 3.296 17 H -0.206 1.206 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.230 4.230 21 C -0.247 4.247 22 C -0.112 4.112 23 C 0.030 3.970 24 H 0.075 0.925 25 C -0.198 4.198 26 O -0.283 6.283 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.052 0.948 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.352 -9.641 -3.323 10.465 hybrid contribution -0.567 1.204 0.199 1.345 sum -2.919 -8.437 -3.123 9.458 Atomic orbital electron populations 1.21838 0.94321 1.02665 1.01627 1.22600 0.95208 0.95698 0.82967 0.89212 1.88425 1.71398 1.40114 1.30371 1.23341 0.94610 0.88821 0.95541 1.23654 0.99490 1.01962 0.95542 1.22525 0.87434 0.90371 0.94472 1.23056 1.03630 0.94055 0.89026 1.62740 1.33166 1.21368 1.07151 1.21910 0.99174 0.91125 0.91807 1.19684 0.93639 0.95998 0.88517 1.20318 0.93401 1.20623 1.17730 0.92238 1.24875 0.94769 0.96706 0.96605 1.69789 1.00671 1.37277 1.43224 0.86788 0.79063 0.82027 0.81758 1.20560 1.20705 1.19280 1.22825 1.00776 0.97344 1.02046 1.22925 0.95435 0.96759 1.09617 1.22843 0.95917 0.95903 0.96540 1.22178 0.96330 0.92567 0.85920 0.92453 1.21707 0.98387 0.99123 1.00615 1.87784 1.39476 1.56359 1.44639 0.91720 0.91227 0.92951 0.92664 0.90460 0.89608 0.89759 0.89989 0.87647 0.94840 0.86480 0.92646 0.91839 0.90636 0.90944 0.91517 0.92583 0.91684 0.92338 0.91429 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.89 37.16 0.33 -2.11 16 2 C 0.09 1.67 3.75 -26.38 -0.10 1.57 16 3 H 0.09 1.69 7.79 -51.93 -0.40 1.29 16 4 O -0.38 -6.74 11.03 -35.23 -0.39 -7.13 16 5 C 0.05 0.80 7.78 38.25 0.30 1.10 16 6 C -0.17 -2.71 5.95 -24.79 -0.15 -2.85 16 7 C 0.09 1.65 0.69 -89.81 -0.06 1.59 16 8 C 0.03 0.61 2.75 -4.06 -0.01 0.60 16 9 N -0.52 -10.35 4.78 -234.71 -1.12 -11.47 16 10 C 0.09 1.91 5.24 -3.83 -0.02 1.89 16 11 C 0.02 0.53 1.26 -155.67 -0.20 0.33 16 12 C -0.48 -11.92 5.38 -34.44 -0.19 -12.11 16 13 H 0.06 1.52 7.71 -52.49 -0.40 1.11 16 14 C 0.07 1.84 4.13 -17.82 -0.07 1.76 16 15 N -0.87 -22.39 11.12 55.43 0.62 -21.77 16 16 Si 0.88 19.75 29.54 -169.99 -5.02 14.73 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C -0.19 -4.20 9.92 -26.69 -0.26 -4.47 16 21 C -0.21 -4.34 7.89 -26.69 -0.21 -4.55 16 22 C 0.02 0.30 3.84 -3.71 -0.01 0.28 16 23 C 0.09 1.37 3.19 -26.68 -0.09 1.29 16 24 H 0.06 0.88 6.42 -51.93 -0.33 0.54 16 25 C -0.14 -1.79 9.57 37.16 0.36 -1.43 16 26 O -0.36 -6.31 8.32 -35.23 -0.29 -6.61 16 27 H 0.06 1.06 7.47 -51.93 -0.39 0.67 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.43 7.92 -51.93 -0.41 1.02 16 33 H 0.08 1.29 6.25 -51.93 -0.32 0.96 16 34 H 0.08 1.86 7.41 -51.93 -0.38 1.48 16 35 H 0.11 2.43 4.60 -51.93 -0.24 2.19 16 36 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 37 H 0.12 2.89 5.92 -51.93 -0.31 2.59 16 38 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.72 8.14 -51.92 -0.42 1.29 16 41 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.07 1.27 7.27 -51.93 -0.38 0.89 16 43 H 0.06 1.09 5.63 -51.93 -0.29 0.79 16 44 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -25.18 346.65 -9.44 -34.62 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -8.07 Total: 9.52 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -0.39 Total: -17.11 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: -0.50 Total: -33.24 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.68 Total: -13.74 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -25.18 -9.44 -34.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.325 kcal (2) G-P(sol) polarization free energy of solvation -25.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds