Wall clock time and date at job start Tue Mar 31 2020 07:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.84989 * 2 1 4 4 O 1.43423 * 109.85390 * 239.04921 * 2 1 3 5 5 C 1.43724 * 109.93507 * 242.58790 * 4 2 1 6 6 C 1.55069 * 105.19701 * 335.69208 * 5 4 2 7 7 C 1.53663 * 109.96730 * 121.03287 * 2 1 3 8 8 C 1.52254 * 110.76910 * 258.00048 * 7 2 1 9 9 N 1.47169 * 109.33369 * 178.62829 * 8 7 2 10 10 C 1.46899 * 110.99780 * 179.06476 * 9 8 7 11 11 C 1.52996 * 109.47545 * 58.12960 * 10 9 8 12 12 C 1.50699 * 115.54947 * 294.41892 * 11 10 9 13 13 H 1.08002 * 120.00348 * 127.37868 * 12 11 10 14 14 C 1.37879 * 120.00186 * 307.37974 * 12 11 10 15 15 N 1.31511 * 119.99694 * 1.86845 * 14 12 11 16 16 Si 1.86796 * 120.00236 * 181.86431 * 14 12 11 17 17 H 1.48495 * 109.47080 * 95.04311 * 16 14 12 18 18 H 1.48498 * 109.47102 * 215.04797 * 16 14 12 19 19 H 1.48504 * 109.47149 * 335.04704 * 16 14 12 20 20 C 1.52995 * 117.49897 * 148.74623 * 11 10 9 21 21 C 1.52998 * 117.49636 * 80.08464 * 11 10 9 22 22 C 1.47010 * 110.65272 * 302.76632 * 9 8 7 23 23 C 1.53104 * 109.41220 * 59.23446 * 22 9 8 24 24 H 1.09007 * 109.52360 * 62.40666 * 23 22 9 25 25 C 1.52999 * 109.52629 * 182.59335 * 23 22 9 26 26 O 1.42060 * 110.94519 * 22.13355 * 7 2 1 27 27 H 1.08999 * 109.46836 * 179.50172 * 1 2 3 28 28 H 1.09003 * 109.46426 * 299.49985 * 1 2 3 29 29 H 1.09001 * 109.47424 * 59.49786 * 1 2 3 30 30 H 1.08995 * 110.29524 * 94.62279 * 5 4 2 31 31 H 1.08997 * 110.29531 * 216.75856 * 5 4 2 32 32 H 1.09003 * 111.13554 * 277.87606 * 6 5 4 33 33 H 1.09004 * 111.13069 * 153.68791 * 6 5 4 34 34 H 1.08995 * 109.49283 * 298.59173 * 8 7 2 35 35 H 1.09001 * 109.49013 * 58.67601 * 8 7 2 36 36 H 1.09006 * 109.46976 * 178.13297 * 10 9 8 37 37 H 1.09005 * 109.47052 * 298.12382 * 10 9 8 38 38 H 0.97001 * 120.00095 * 183.38098 * 15 14 12 39 39 H 1.09001 * 117.50521 * 0.02562 * 20 11 10 40 40 H 1.09007 * 117.49763 * 145.02168 * 20 11 10 41 41 H 1.08997 * 117.49872 * 214.97818 * 21 11 10 42 42 H 1.09000 * 117.50224 * 359.97438 * 21 11 10 43 43 H 1.08996 * 109.48516 * 299.25221 * 22 9 8 44 44 H 1.09005 * 109.48467 * 179.21450 * 22 9 8 45 45 H 1.08995 * 109.47484 * 182.44522 * 25 23 22 46 46 H 1.09003 * 109.46622 * 302.44429 * 25 23 22 47 47 H 1.08995 * 109.46986 * 62.44065 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9002 1.0253 0.0000 4 8 2.0171 -0.6938 -1.1569 5 6 2.7686 -1.8508 -0.7541 6 6 3.2614 -1.5357 0.6820 7 6 2.0548 -0.7446 1.2375 8 6 2.5173 0.2391 2.3036 9 7 2.9819 -0.5055 3.4850 10 6 3.4583 0.4100 4.5304 11 6 2.3323 1.3697 4.9200 12 6 1.8920 2.3267 3.8424 13 1 0.8477 2.3973 3.5765 14 6 2.8225 3.1124 3.1959 15 7 4.0985 3.0002 3.4938 16 14 2.2708 4.3360 1.8968 17 1 2.0980 5.6735 2.5183 18 1 3.2960 4.4166 0.8255 19 1 0.9796 3.8906 1.3138 20 6 2.2986 1.8694 6.3656 21 6 1.2632 0.8503 5.8834 22 6 1.9182 -1.3817 3.9969 23 6 1.5003 -2.3675 2.9024 24 1 2.3479 -3.0003 2.6391 25 6 0.3492 -3.2379 3.4106 26 8 1.0731 -1.6353 1.7484 27 1 -0.3633 -1.0276 -0.0089 28 1 -0.3632 0.5061 0.8945 29 1 -0.3634 0.5216 -0.8854 30 1 2.1297 -2.7338 -0.7495 31 1 3.6177 -2.0011 -1.4209 32 1 4.1604 -0.9196 0.6627 33 1 3.4267 -2.4511 1.2504 34 1 3.3343 0.8441 1.9104 35 1 1.6873 0.8870 2.5853 36 1 3.7647 -0.1647 5.4045 37 1 4.3079 0.9801 4.1544 38 1 4.7478 3.5866 3.0749 39 1 3.0789 1.5149 7.0391 40 1 1.9576 2.8905 6.5374 41 1 0.2416 1.2012 5.7382 42 1 1.3619 -0.1752 6.2394 43 1 1.0592 -0.7780 4.2896 44 1 2.2865 -1.9336 4.8617 45 1 0.0813 -3.9681 2.6470 46 1 0.6595 -3.7575 4.3172 47 1 -0.5131 -2.6083 3.6298 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602819833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:33 Heat of formation + Delta-G solvation = -65.535650 kcal Electronic energy + Delta-G solvation = -27214.470664 eV Core-core repulsion = 23783.849907 eV Total energy + Delta-G solvation = -3430.620757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82357 -39.65833 -38.26928 -35.37050 -34.46637 -33.89845 -32.42190 -31.39489 -28.68410 -28.24071 -27.25187 -25.61958 -23.61574 -23.28330 -22.93293 -21.93144 -20.92019 -20.18891 -18.19947 -17.94527 -17.33832 -16.79858 -16.73103 -16.22793 -15.86952 -15.62332 -15.47789 -15.15792 -14.82983 -14.61227 -14.07357 -13.98189 -13.67718 -13.43489 -13.26397 -13.06377 -13.01027 -12.96673 -12.90990 -12.56172 -12.53412 -12.39118 -12.36029 -12.09048 -12.02302 -11.76928 -11.62152 -11.35076 -11.08078 -10.75379 -10.68636 -10.53352 -10.34479 -9.95722 -8.91534 -8.08664 -6.07581 1.33633 1.41108 1.46049 2.37862 2.63637 2.85889 3.00385 3.23807 3.56245 3.65056 3.84670 4.00195 4.07151 4.21658 4.28728 4.30056 4.36341 4.39771 4.43863 4.51088 4.56840 4.68162 4.71162 4.71874 4.81530 4.82839 4.86402 4.90951 4.97338 4.99365 5.06464 5.10252 5.15083 5.17107 5.25082 5.35915 5.37149 5.46283 5.53115 5.58098 5.70839 5.94320 5.98803 6.29035 6.37544 6.42480 6.57775 6.80435 7.43303 8.92676 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.008672 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.254177 B = 3227.930563 C = 4451.368426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.071 0.929 4 O -0.395 6.395 5 C 0.054 3.946 6 C -0.163 4.163 7 C 0.095 3.905 8 C 0.046 3.954 9 N -0.520 5.520 10 C 0.096 3.904 11 C 0.002 3.998 12 C -0.484 4.484 13 H 0.044 0.956 14 C 0.045 3.955 15 N -0.892 5.892 16 Si 0.915 3.085 17 H -0.281 1.281 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.197 4.197 21 C -0.185 4.185 22 C 0.018 3.982 23 C 0.086 3.914 24 H 0.068 0.932 25 C -0.134 4.134 26 O -0.368 6.368 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.039 0.961 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 -11.683 -2.947 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 H 0.088 0.912 4 O -0.315 6.315 5 C -0.022 4.022 6 C -0.200 4.200 7 C 0.055 3.945 8 C -0.082 4.082 9 N -0.242 5.242 10 C -0.032 4.032 11 C 0.000 4.000 12 C -0.521 4.521 13 H 0.062 0.938 14 C -0.156 4.156 15 N -0.530 5.530 16 Si 0.742 3.258 17 H -0.207 1.207 18 H -0.208 1.208 19 H -0.190 1.190 20 C -0.235 4.235 21 C -0.222 4.222 22 C -0.110 4.110 23 C 0.028 3.972 24 H 0.086 0.914 25 C -0.191 4.191 26 O -0.287 6.287 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.057 0.943 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.007 -11.904 -3.476 12.760 hybrid contribution -0.370 1.882 0.277 1.938 sum -3.377 -10.022 -3.199 11.049 Atomic orbital electron populations 1.21757 0.93348 1.02950 1.01601 1.22538 0.96006 0.94986 0.83353 0.91154 1.88407 1.71804 1.41058 1.30196 1.23518 0.95368 0.88270 0.95052 1.23577 0.98097 1.01834 0.96542 1.22342 0.88384 0.90288 0.93520 1.22680 1.01113 0.94337 0.90066 1.62714 1.34224 1.20755 1.06501 1.21673 0.97962 0.91147 0.92413 1.19724 0.95178 0.96619 0.88442 1.20369 0.92564 1.20965 1.18247 0.93791 1.25254 0.94813 0.97823 0.97747 1.69888 1.01122 1.37828 1.44135 0.86178 0.78768 0.80527 0.80354 1.20746 1.20793 1.19003 1.22819 1.01819 0.97224 1.01677 1.22882 0.94542 0.97416 1.07363 1.22925 0.94436 0.95674 0.98014 1.22387 0.98080 0.92113 0.84592 0.91443 1.21704 0.96785 0.98729 1.01926 1.87790 1.39472 1.56156 1.45312 0.91193 0.92368 0.91826 0.91289 0.88115 0.90769 0.88565 0.93053 0.90469 0.93805 0.89520 0.92968 0.90644 0.92003 0.91280 0.89299 0.94312 0.90031 0.90944 0.89182 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 8.89 71.98 0.64 -3.88 16 2 C 0.09 3.17 3.75 30.82 0.12 3.28 16 3 H 0.07 2.74 7.79 -2.39 -0.02 2.72 16 4 O -0.39 -13.34 11.03 -148.98 -1.64 -14.98 16 5 C 0.05 1.48 7.78 72.69 0.57 2.04 16 6 C -0.16 -4.98 5.95 31.85 0.19 -4.79 16 7 C 0.10 3.34 0.69 -10.27 -0.01 3.33 16 8 C 0.05 1.92 2.75 86.01 0.24 2.16 16 9 N -0.52 -20.36 4.78 -896.49 -4.28 -24.64 16 10 C 0.10 4.21 5.24 86.30 0.45 4.66 16 11 C 0.00 0.09 1.26 -52.93 -0.07 0.03 16 12 C -0.48 -24.42 5.38 25.60 0.14 -24.28 16 13 H 0.04 2.31 7.71 -2.91 -0.02 2.29 16 14 C 0.04 2.29 4.13 84.66 0.35 2.64 16 15 N -0.89 -47.07 11.12 21.45 0.24 -46.83 16 16 Si 0.92 41.47 29.54 68.60 2.03 43.49 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C -0.20 -8.56 9.92 30.62 0.30 -8.26 16 21 C -0.18 -7.41 7.89 30.62 0.24 -7.17 16 22 C 0.02 0.60 3.84 86.32 0.33 0.93 16 23 C 0.09 2.44 3.19 30.63 0.10 2.54 16 24 H 0.07 1.82 6.42 -2.38 -0.02 1.81 16 25 C -0.13 -2.93 9.57 71.98 0.69 -2.24 16 26 O -0.37 -12.12 8.32 -148.97 -1.24 -13.36 16 27 H 0.07 2.17 7.47 -2.39 -0.02 2.16 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.07 2.44 7.92 -2.39 -0.02 2.42 16 33 H 0.10 2.69 6.25 -2.39 -0.01 2.68 16 34 H 0.05 2.43 7.41 -2.39 -0.02 2.41 16 35 H 0.08 3.66 4.60 -2.39 -0.01 3.65 16 36 H 0.04 1.79 8.06 -2.38 -0.02 1.77 16 37 H 0.09 4.38 5.92 -2.38 -0.01 4.37 16 38 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 39 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 41 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.09 3.16 7.27 -2.39 -0.02 3.14 16 43 H 0.04 1.44 5.63 -2.39 -0.01 1.43 16 44 H 0.08 2.45 8.12 -2.38 -0.02 2.43 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -54.22 346.65 0.31 -53.90 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.94 Total: 31.42 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.28 Total: -29.00 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -4.04 Total: -71.47 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -2.88 Total: -28.34 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -54.22 0.31 -53.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.633 kcal (2) G-P(sol) polarization free energy of solvation -54.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds