Wall clock time and date at job start Tue Mar 31 2020 07:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.51061 * 2 1 4 4 C 1.53095 * 109.51093 * 239.91254 * 2 1 3 5 5 N 1.47009 * 109.30517 * 183.19786 * 4 2 1 6 6 C 1.46894 * 111.00183 * 182.39832 * 5 4 2 7 7 C 1.52998 * 109.47276 * 75.45561 * 6 5 4 8 8 C 1.50703 * 115.55079 * 54.63863 * 7 6 5 9 9 H 1.07995 * 119.99928 * 264.92727 * 8 7 6 10 10 C 1.37881 * 119.99949 * 84.92961 * 8 7 6 11 11 N 1.31509 * 119.99878 * 185.38960 * 10 8 7 12 12 Si 1.86797 * 119.99845 * 5.38672 * 10 8 7 13 13 H 1.48503 * 109.47091 * 85.49475 * 12 10 8 14 14 H 1.48503 * 109.47557 * 325.49467 * 12 10 8 15 15 H 1.48504 * 109.47213 * 205.49213 * 12 10 8 16 16 C 1.53000 * 117.49848 * 200.30870 * 7 6 5 17 17 C 1.52998 * 117.49998 * 268.97225 * 7 6 5 18 18 C 1.47036 * 110.73828 * 58.62539 * 5 4 2 19 19 C 1.52985 * 109.24790 * 301.51128 * 18 5 4 20 20 C 1.53071 * 109.58371 * 176.88186 * 19 18 5 21 21 C 1.53113 * 109.16713 * 176.81389 * 20 19 18 22 22 O 1.42902 * 109.41069 * 302.52980 * 21 20 19 23 23 C 1.42916 * 114.12954 * 61.17648 * 22 21 20 24 24 C 1.53087 * 109.53060 * 296.66064 * 19 18 5 25 25 O 1.42914 * 109.44535 * 56.73504 * 19 18 5 26 26 H 1.08999 * 109.46999 * 184.65442 * 1 2 3 27 27 H 1.09003 * 109.46461 * 304.65210 * 1 2 3 28 28 H 1.09001 * 109.46964 * 64.65248 * 1 2 3 29 29 H 1.09000 * 109.49677 * 63.24104 * 4 2 1 30 30 H 1.08999 * 109.51993 * 303.16294 * 4 2 1 31 31 H 1.08998 * 109.47186 * 315.45306 * 6 5 4 32 32 H 1.08997 * 109.47182 * 195.45839 * 6 5 4 33 33 H 0.97003 * 119.99734 * 185.02096 * 11 10 8 34 34 H 1.09006 * 117.49780 * 214.99938 * 16 7 6 35 35 H 1.08995 * 117.49979 * 0.02681 * 16 7 6 36 36 H 1.09006 * 117.49996 * 359.97141 * 17 7 6 37 37 H 1.09001 * 117.50423 * 144.97420 * 17 7 6 38 38 H 1.09000 * 109.51053 * 61.45210 * 18 5 4 39 39 H 1.09004 * 109.50528 * 181.58291 * 18 5 4 40 40 H 1.09008 * 109.52523 * 296.71959 * 20 19 18 41 41 H 1.08996 * 109.52111 * 56.90821 * 20 19 18 42 42 H 1.09000 * 109.48535 * 182.54567 * 21 20 19 43 43 H 1.09004 * 109.48416 * 62.50798 * 21 20 19 44 44 H 1.09000 * 109.48027 * 178.83176 * 23 22 21 45 45 H 1.08996 * 109.49686 * 58.79267 * 23 22 21 46 46 H 1.09000 * 109.51921 * 303.03315 * 24 19 18 47 47 H 1.08999 * 109.52585 * 63.16070 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7234 -1.2486 5 7 3.5094 -0.7881 -1.2059 6 6 4.0437 -1.4261 -2.4163 7 6 3.9654 -0.4443 -3.5872 8 6 4.6271 0.8907 -3.3614 9 1 4.0429 1.7319 -3.0189 10 6 5.9785 1.0382 -3.5922 11 7 6.5765 2.1711 -3.2951 12 14 6.9598 -0.3713 -4.3268 13 1 6.8573 -0.3268 -5.8077 14 1 6.4183 -1.6625 -3.8318 15 1 8.3839 -0.2452 -3.9252 16 6 4.0132 -1.0262 -5.0014 17 6 2.6998 -0.4691 -4.4465 18 6 3.9646 -1.4888 0.0040 19 6 3.4326 -0.7599 1.2393 20 6 3.8368 -1.5264 2.5011 21 6 3.3689 -0.7480 3.7337 22 8 3.9335 0.5646 3.7090 23 6 3.5490 1.3447 2.5749 24 6 4.0248 0.6507 1.2957 25 8 2.0078 -0.6770 1.1660 26 1 -0.3633 -1.0243 0.0834 27 1 -0.3632 0.5844 0.8454 28 1 -0.3633 0.4400 -0.9287 29 1 1.7268 -0.1789 -2.1389 30 1 1.6333 -1.7338 -1.2769 31 1 3.4570 -2.3150 -2.6477 32 1 5.0827 -1.7099 -2.2490 33 1 7.5101 2.3013 -3.5240 34 1 4.5231 -0.4434 -5.7685 35 1 4.0999 -2.1085 -5.0977 36 1 1.9230 -1.1851 -4.1780 37 1 2.3455 0.4803 -4.8482 38 1 3.5891 -2.5120 -0.0049 39 1 5.0543 -1.5006 0.0294 40 1 3.3705 -2.5117 2.4939 41 1 4.9209 -1.6358 2.5292 42 1 3.6936 -1.2663 4.6360 43 1 2.2813 -0.6760 3.7271 44 1 4.0032 2.3332 2.6428 45 1 2.4637 1.4439 2.5527 46 1 5.1130 0.5891 1.2979 47 1 3.6938 1.2197 0.4269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:50 Heat of formation + Delta-G solvation = -56.805494 kcal Electronic energy + Delta-G solvation = -26395.254730 eV Core-core repulsion = 22965.012541 eV Total energy + Delta-G solvation = -3430.242189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46647 -38.14218 -37.02919 -34.51475 -33.69903 -31.97638 -30.96293 -30.67575 -27.50568 -26.80982 -25.38427 -23.75804 -23.34622 -22.14691 -21.55195 -20.76546 -19.13475 -18.80102 -16.49502 -16.32328 -15.88568 -15.75215 -15.45073 -15.05526 -14.62728 -14.57615 -14.45087 -14.13280 -13.50746 -13.41737 -12.88799 -12.62569 -12.45868 -12.37930 -12.20740 -12.11674 -11.97761 -11.66640 -11.46140 -11.18605 -11.12069 -11.06811 -10.82348 -10.54391 -10.42947 -10.20653 -10.15538 -9.95676 -9.58060 -9.46115 -9.06589 -8.96897 -8.50789 -8.36774 -7.62516 -6.00229 -3.98836 3.32044 3.41990 3.43661 3.79393 4.03153 4.21637 4.49441 4.84601 4.94582 4.94957 4.99474 5.16868 5.18224 5.27060 5.36770 5.40935 5.51352 5.53733 5.59649 5.70517 5.72130 5.74405 5.78536 5.82789 5.92550 5.95545 5.99081 6.02502 6.09253 6.14263 6.15785 6.17426 6.24111 6.31492 6.40949 6.43913 6.54782 6.64432 6.70169 7.05265 7.13121 7.34859 7.45393 7.60648 7.69573 7.87199 8.62239 9.04123 9.63543 11.12188 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.005811 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.630416 B = 4817.073401 C = 5542.124370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.072 0.928 4 C 0.030 3.970 5 N -0.502 5.502 6 C 0.096 3.904 7 C 0.014 3.986 8 C -0.453 4.453 9 H 0.077 0.923 10 C 0.075 3.925 11 N -0.901 5.901 12 Si 0.876 3.124 13 H -0.281 1.281 14 H -0.265 1.265 15 H -0.298 1.298 16 C -0.205 4.205 17 C -0.185 4.185 18 C 0.033 3.967 19 C 0.126 3.874 20 C -0.140 4.140 21 C 0.068 3.932 22 O -0.388 6.388 23 C 0.065 3.935 24 C -0.169 4.169 25 O -0.378 6.378 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.026 0.974 31 H 0.009 0.991 32 H 0.068 0.932 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.029 0.971 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 -7.061 9.470 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.089 0.911 4 C -0.098 4.098 5 N -0.225 5.225 6 C -0.032 4.032 7 C 0.012 3.988 8 C -0.491 4.491 9 H 0.095 0.905 10 C -0.126 4.126 11 N -0.539 5.539 12 Si 0.705 3.295 13 H -0.207 1.207 14 H -0.189 1.189 15 H -0.225 1.225 16 C -0.243 4.243 17 C -0.222 4.222 18 C -0.095 4.095 19 C 0.087 3.913 20 C -0.178 4.178 21 C -0.009 4.009 22 O -0.307 6.307 23 C -0.012 4.012 24 C -0.207 4.207 25 O -0.298 6.298 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.044 0.956 31 H 0.028 0.972 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.463 -6.509 9.829 14.512 hybrid contribution 0.421 -1.691 -1.181 2.105 sum -8.042 -8.201 8.648 14.378 Atomic orbital electron populations 1.21723 0.93407 1.02411 1.02317 1.22182 0.93994 0.96464 0.84482 0.91053 1.22793 0.88881 0.98910 0.99234 1.61928 1.07373 1.52237 1.00995 1.21866 0.98322 0.93040 0.89943 1.19406 0.96775 0.96416 0.86184 1.20087 0.92746 0.92537 1.43690 0.90518 1.24884 0.97154 0.95298 0.95222 1.69906 1.11876 1.25330 1.46826 0.86958 0.78777 0.84125 0.79664 1.20742 1.18939 1.22499 1.23006 1.02402 0.98179 1.00737 1.22851 0.90749 1.01121 1.07485 1.22705 1.00971 0.94939 0.90902 1.21352 0.81033 0.95120 0.93836 1.22155 1.02104 0.99400 0.94109 1.22441 0.97866 0.83461 0.97166 1.87878 1.72439 1.25664 1.44696 1.22569 0.99150 0.94370 0.85061 1.22613 1.02262 0.96520 0.99294 1.87890 1.20350 1.78322 1.43199 0.92283 0.92094 0.90947 0.88943 0.95584 0.97246 0.91414 0.92898 0.89370 0.91338 0.91466 0.89617 0.95246 0.90020 0.90564 0.89759 0.89399 0.92641 0.89060 0.93113 0.90213 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.57 37.16 0.36 -1.32 16 2 C 0.09 1.28 3.03 -26.68 -0.08 1.20 16 3 H 0.07 1.15 6.44 -51.93 -0.33 0.81 16 4 C 0.03 0.50 4.70 -3.72 -0.02 0.48 16 5 N -0.50 -9.45 3.78 -234.37 -0.89 -10.33 16 6 C 0.10 1.95 4.72 -3.83 -0.02 1.93 16 7 C 0.01 0.30 0.70 -155.66 -0.11 0.19 16 8 C -0.45 -12.12 9.11 -34.44 -0.31 -12.43 16 9 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 10 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -26.97 13.95 55.43 0.77 -26.20 16 12 Si 0.88 21.52 24.79 -169.99 -4.21 17.30 16 13 H -0.28 -6.82 7.09 56.52 0.40 -6.42 16 14 H -0.26 -6.16 5.84 56.52 0.33 -5.83 16 15 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 16 C -0.21 -4.29 7.56 -26.69 -0.20 -4.49 16 17 C -0.18 -3.62 8.52 -26.69 -0.23 -3.85 16 18 C 0.03 0.56 4.30 -3.76 -0.02 0.54 16 19 C 0.13 1.90 0.69 -90.55 -0.06 1.83 16 20 C -0.14 -1.77 5.15 -26.64 -0.14 -1.90 16 21 C 0.07 0.83 6.70 37.22 0.25 1.08 16 22 O -0.39 -5.66 10.76 -35.23 -0.38 -6.04 16 23 C 0.06 0.93 6.70 37.21 0.25 1.18 16 24 C -0.17 -2.71 4.51 -26.63 -0.12 -2.83 16 25 O -0.38 -5.73 8.90 -35.23 -0.31 -6.04 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.61 6.28 -51.93 -0.33 1.28 16 30 H 0.03 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.01 0.18 7.94 -51.93 -0.41 -0.23 16 32 H 0.07 1.46 6.41 -51.93 -0.33 1.13 16 33 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 34 H 0.09 1.94 7.07 -51.93 -0.37 1.58 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 37 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 40 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.69 7.83 -51.93 -0.41 0.28 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.05 0.71 7.82 -51.93 -0.41 0.30 16 46 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.10 1.80 6.08 -51.93 -0.32 1.48 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -29.36 349.62 -8.74 -38.09 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.44 Total: 4.33 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -0.55 Total: -16.37 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.11 Total: -36.53 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.69 Total: -12.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.21 Total: 17.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.36 -8.74 -38.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.714 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds