Wall clock time and date at job start Tue Mar 31 2020 07:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.51061 * 2 1 4 4 C 1.53095 * 109.51093 * 239.91254 * 2 1 3 5 5 N 1.47009 * 109.30517 * 183.19786 * 4 2 1 6 6 C 1.46894 * 111.00183 * 182.39832 * 5 4 2 7 7 C 1.52998 * 109.47276 * 75.45561 * 6 5 4 8 8 C 1.50703 * 115.55079 * 54.63863 * 7 6 5 9 9 H 1.07995 * 119.99928 * 264.92727 * 8 7 6 10 10 C 1.37881 * 119.99949 * 84.92961 * 8 7 6 11 11 N 1.31509 * 119.99878 * 185.38960 * 10 8 7 12 12 Si 1.86797 * 119.99845 * 5.38672 * 10 8 7 13 13 H 1.48503 * 109.47091 * 85.49475 * 12 10 8 14 14 H 1.48503 * 109.47557 * 325.49467 * 12 10 8 15 15 H 1.48504 * 109.47213 * 205.49213 * 12 10 8 16 16 C 1.53000 * 117.49848 * 200.30870 * 7 6 5 17 17 C 1.52998 * 117.49998 * 268.97225 * 7 6 5 18 18 C 1.47036 * 110.73828 * 58.62539 * 5 4 2 19 19 C 1.52985 * 109.24790 * 301.51128 * 18 5 4 20 20 C 1.53071 * 109.58371 * 176.88186 * 19 18 5 21 21 C 1.53113 * 109.16713 * 176.81389 * 20 19 18 22 22 O 1.42902 * 109.41069 * 302.52980 * 21 20 19 23 23 C 1.42916 * 114.12954 * 61.17648 * 22 21 20 24 24 C 1.53087 * 109.53060 * 296.66064 * 19 18 5 25 25 O 1.42914 * 109.44535 * 56.73504 * 19 18 5 26 26 H 1.08999 * 109.46999 * 184.65442 * 1 2 3 27 27 H 1.09003 * 109.46461 * 304.65210 * 1 2 3 28 28 H 1.09001 * 109.46964 * 64.65248 * 1 2 3 29 29 H 1.09000 * 109.49677 * 63.24104 * 4 2 1 30 30 H 1.08999 * 109.51993 * 303.16294 * 4 2 1 31 31 H 1.08998 * 109.47186 * 315.45306 * 6 5 4 32 32 H 1.08997 * 109.47182 * 195.45839 * 6 5 4 33 33 H 0.97003 * 119.99734 * 185.02096 * 11 10 8 34 34 H 1.09006 * 117.49780 * 214.99938 * 16 7 6 35 35 H 1.08995 * 117.49979 * 0.02681 * 16 7 6 36 36 H 1.09006 * 117.49996 * 359.97141 * 17 7 6 37 37 H 1.09001 * 117.50423 * 144.97420 * 17 7 6 38 38 H 1.09000 * 109.51053 * 61.45210 * 18 5 4 39 39 H 1.09004 * 109.50528 * 181.58291 * 18 5 4 40 40 H 1.09008 * 109.52523 * 296.71959 * 20 19 18 41 41 H 1.08996 * 109.52111 * 56.90821 * 20 19 18 42 42 H 1.09000 * 109.48535 * 182.54567 * 21 20 19 43 43 H 1.09004 * 109.48416 * 62.50798 * 21 20 19 44 44 H 1.09000 * 109.48027 * 178.83176 * 23 22 21 45 45 H 1.08996 * 109.49686 * 58.79267 * 23 22 21 46 46 H 1.09000 * 109.51921 * 303.03315 * 24 19 18 47 47 H 1.08999 * 109.52585 * 63.16070 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7234 -1.2486 5 7 3.5094 -0.7881 -1.2059 6 6 4.0437 -1.4261 -2.4163 7 6 3.9654 -0.4443 -3.5872 8 6 4.6271 0.8907 -3.3614 9 1 4.0429 1.7319 -3.0189 10 6 5.9785 1.0382 -3.5922 11 7 6.5765 2.1711 -3.2951 12 14 6.9598 -0.3713 -4.3268 13 1 6.8573 -0.3268 -5.8077 14 1 6.4183 -1.6625 -3.8318 15 1 8.3839 -0.2452 -3.9252 16 6 4.0132 -1.0262 -5.0014 17 6 2.6998 -0.4691 -4.4465 18 6 3.9646 -1.4888 0.0040 19 6 3.4326 -0.7599 1.2393 20 6 3.8368 -1.5264 2.5011 21 6 3.3689 -0.7480 3.7337 22 8 3.9335 0.5646 3.7090 23 6 3.5490 1.3447 2.5749 24 6 4.0248 0.6507 1.2957 25 8 2.0078 -0.6770 1.1660 26 1 -0.3633 -1.0243 0.0834 27 1 -0.3632 0.5844 0.8454 28 1 -0.3633 0.4400 -0.9287 29 1 1.7268 -0.1789 -2.1389 30 1 1.6333 -1.7338 -1.2769 31 1 3.4570 -2.3150 -2.6477 32 1 5.0827 -1.7099 -2.2490 33 1 7.5101 2.3013 -3.5240 34 1 4.5231 -0.4434 -5.7685 35 1 4.0999 -2.1085 -5.0977 36 1 1.9230 -1.1851 -4.1780 37 1 2.3455 0.4803 -4.8482 38 1 3.5891 -2.5120 -0.0049 39 1 5.0543 -1.5006 0.0294 40 1 3.3705 -2.5117 2.4939 41 1 4.9209 -1.6358 2.5292 42 1 3.6936 -1.2663 4.6360 43 1 2.2813 -0.6760 3.7271 44 1 4.0032 2.3332 2.6428 45 1 2.4637 1.4439 2.5527 46 1 5.1130 0.5891 1.2979 47 1 3.6938 1.2197 0.4269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602822510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:50 Heat of formation + Delta-G solvation = -76.010151 kcal Electronic energy + Delta-G solvation = -26396.087507 eV Core-core repulsion = 22965.012541 eV Total energy + Delta-G solvation = -3431.074965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69503 -39.48700 -38.48609 -35.94432 -34.86147 -34.10303 -32.10381 -31.81495 -28.94995 -28.11558 -27.31346 -24.94748 -24.62829 -23.49572 -23.07560 -21.95452 -20.78044 -20.25122 -18.24407 -17.55736 -17.21568 -17.04357 -16.73453 -16.67845 -16.05637 -15.79864 -15.72874 -15.55194 -14.97180 -14.81209 -14.72891 -14.15106 -13.76326 -13.59238 -13.52623 -13.34591 -13.09855 -12.99532 -12.94481 -12.68874 -12.57705 -12.33493 -12.21007 -12.14467 -11.98697 -11.87214 -11.49564 -11.32828 -11.20132 -10.91326 -10.66360 -10.48378 -10.27399 -10.13876 -9.02913 -8.17654 -6.18835 1.36151 1.38851 1.48731 2.42814 2.62356 2.81416 2.98198 3.17467 3.33872 3.68646 3.75323 3.82234 3.94958 4.07631 4.15102 4.18290 4.27976 4.29310 4.36297 4.40712 4.44739 4.46900 4.51736 4.60122 4.66079 4.70823 4.73866 4.75292 4.79289 4.84628 4.90404 4.90673 4.94627 5.02987 5.07628 5.10574 5.22504 5.29702 5.34333 5.39852 5.50135 5.78702 6.19401 6.22989 6.26056 6.32055 6.47406 6.86048 7.46504 8.98554 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.005811 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.630416 B = 4817.073401 C = 5542.124370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.050 0.950 4 C 0.035 3.965 5 N -0.529 5.529 6 C 0.104 3.896 7 C -0.013 4.013 8 C -0.440 4.440 9 H 0.029 0.971 10 C 0.018 3.982 11 N -0.953 5.953 12 Si 0.932 3.068 13 H -0.273 1.273 14 H -0.239 1.239 15 H -0.307 1.307 16 C -0.202 4.202 17 C -0.162 4.162 18 C 0.035 3.965 19 C 0.128 3.872 20 C -0.135 4.135 21 C 0.065 3.935 22 O -0.400 6.400 23 C 0.072 3.928 24 C -0.164 4.164 25 O -0.374 6.374 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.259 0.741 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 -10.008 10.000 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.029 3.971 3 H 0.068 0.932 4 C -0.094 4.094 5 N -0.252 5.252 6 C -0.024 4.024 7 C -0.015 4.015 8 C -0.478 4.478 9 H 0.047 0.953 10 C -0.177 4.177 11 N -0.595 5.595 12 Si 0.759 3.241 13 H -0.199 1.199 14 H -0.163 1.163 15 H -0.235 1.235 16 C -0.239 4.239 17 C -0.199 4.199 18 C -0.094 4.094 19 C 0.088 3.912 20 C -0.173 4.173 21 C -0.012 4.012 22 O -0.319 6.319 23 C -0.005 4.005 24 C -0.203 4.203 25 O -0.294 6.294 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.134 0.866 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.092 -9.480 10.360 17.293 hybrid contribution 0.845 -0.685 -1.326 1.715 sum -9.247 -10.165 9.034 16.445 Atomic orbital electron populations 1.21699 0.90724 1.03319 1.03355 1.22218 0.95956 0.95080 0.83867 0.93178 1.22778 0.87527 0.99470 0.99579 1.61845 1.08946 1.53156 1.01291 1.21660 0.97964 0.93115 0.89651 1.19312 0.99108 0.95019 0.88019 1.20182 0.92368 0.93596 1.41656 0.95263 1.25645 0.98404 0.97526 0.96164 1.70066 1.12140 1.27942 1.49344 0.86020 0.76687 0.82204 0.79180 1.19874 1.16263 1.23479 1.23038 1.02739 0.99563 0.98603 1.22852 0.90644 1.01426 1.05024 1.22721 1.00418 0.95612 0.90612 1.21387 0.81001 0.94339 0.94497 1.22173 1.02476 0.99921 0.92763 1.22647 0.97988 0.82431 0.98096 1.87868 1.72873 1.26855 1.44304 1.22473 0.99317 0.94426 0.84254 1.22503 1.01094 0.97540 0.99115 1.87901 1.20152 1.78118 1.43189 0.91338 0.91113 0.89956 0.90053 0.94376 0.94923 0.93039 0.93222 0.90885 0.88536 0.88251 0.90485 0.93885 0.91159 0.88677 0.89488 0.86648 0.92463 0.88758 0.92607 0.92023 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.57 71.98 0.69 -2.17 16 2 C 0.09 2.49 3.03 30.63 0.09 2.58 16 3 H 0.05 1.65 6.44 -2.39 -0.02 1.64 16 4 C 0.03 1.10 4.70 86.31 0.41 1.50 16 5 N -0.53 -19.62 3.78 -895.42 -3.39 -23.01 16 6 C 0.10 4.06 4.72 86.30 0.41 4.46 16 7 C -0.01 -0.58 0.70 -52.93 -0.04 -0.62 16 8 C -0.44 -24.30 9.11 25.60 0.23 -24.06 16 9 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 10 C 0.02 1.05 5.47 84.66 0.46 1.51 16 11 N -0.95 -59.81 13.95 21.45 0.30 -59.51 16 12 Si 0.93 44.66 24.79 68.60 1.70 46.36 16 13 H -0.27 -12.63 7.09 99.48 0.71 -11.92 16 14 H -0.24 -10.39 5.84 99.48 0.58 -9.81 16 15 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 16 C -0.20 -7.89 7.56 30.62 0.23 -7.66 16 17 C -0.16 -6.00 8.52 30.62 0.26 -5.74 16 18 C 0.03 1.12 4.30 86.27 0.37 1.49 16 19 C 0.13 3.71 0.69 -10.75 -0.01 3.70 16 20 C -0.14 -3.13 5.15 30.66 0.16 -2.97 16 21 C 0.06 1.43 6.70 72.02 0.48 1.91 16 22 O -0.40 -11.17 10.76 -148.98 -1.60 -12.77 16 23 C 0.07 2.05 6.70 72.02 0.48 2.53 16 24 C -0.16 -5.42 4.51 30.66 0.14 -5.28 16 25 O -0.37 -10.70 8.90 -148.98 -1.33 -12.03 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 2.73 6.28 -2.39 -0.01 2.72 16 30 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 31 H 0.03 1.12 7.94 -2.39 -0.02 1.11 16 32 H 0.05 2.14 6.41 -2.39 -0.02 2.13 16 33 H 0.26 15.47 8.32 -92.71 -0.77 14.70 16 34 H 0.07 3.08 7.07 -2.38 -0.02 3.07 16 35 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.10 3.06 8.02 -2.38 -0.02 3.04 16 37 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 2.39 8.03 -2.38 -0.02 2.37 16 40 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 1.26 7.83 -2.38 -0.02 1.24 16 44 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.06 1.53 7.82 -2.39 -0.02 1.51 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.07 2.67 6.08 -2.39 -0.01 2.65 16 Total: -1.00 -65.44 349.62 0.85 -64.60 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.79 Total: 25.17 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 4.37 Total: -28.80 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -3.09 Total: -82.52 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -2.93 Total: -24.80 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.70 Total: 46.36 kcal Total: -65.44 0.85 -64.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.415 kcal (2) G-P(sol) polarization free energy of solvation -65.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds