Wall clock time and date at job start Tue Mar 31 2020 07:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.51325 * 2 1 4 4 C 1.53098 * 109.54924 * 239.87766 * 2 1 3 5 5 N 1.47007 * 109.29538 * 183.17144 * 4 2 1 6 6 C 1.46907 * 111.00023 * 182.39782 * 5 4 2 7 7 C 1.52991 * 109.47354 * 282.44799 * 6 5 4 8 8 C 1.50700 * 115.55240 * 279.89639 * 7 6 5 9 9 H 1.07998 * 120.00344 * 118.00517 * 8 7 6 10 10 C 1.37877 * 119.99634 * 298.01052 * 8 7 6 11 11 N 1.31519 * 120.00092 * 161.38223 * 10 8 7 12 12 Si 1.86806 * 120.00228 * 341.38058 * 10 8 7 13 13 H 1.48495 * 109.46985 * 85.18057 * 12 10 8 14 14 H 1.48496 * 109.46975 * 205.18453 * 12 10 8 15 15 H 1.48501 * 109.46743 * 325.18326 * 12 10 8 16 16 C 1.53001 * 117.49922 * 134.18680 * 7 6 5 17 17 C 1.53001 * 60.00006 * 252.51154 * 16 7 6 18 18 C 1.47035 * 110.74863 * 58.62779 * 5 4 2 19 19 C 1.53003 * 109.24793 * 301.50255 * 18 5 4 20 20 C 1.53106 * 109.49745 * 296.76090 * 19 18 5 21 21 C 1.53199 * 109.02301 * 183.03965 * 20 19 18 22 22 C 1.53096 * 109.14447 * 56.90257 * 21 20 19 23 23 O 1.42899 * 109.44612 * 302.36931 * 22 21 20 24 24 C 1.42920 * 114.09695 * 61.16231 * 23 22 21 25 25 O 1.42932 * 109.41612 * 56.73941 * 19 18 5 26 26 H 1.09006 * 109.47149 * 295.03737 * 1 2 3 27 27 H 1.08997 * 109.47608 * 55.03552 * 1 2 3 28 28 H 1.09000 * 109.47361 * 175.04162 * 1 2 3 29 29 H 1.09001 * 109.50430 * 303.12211 * 4 2 1 30 30 H 1.09005 * 109.50164 * 63.22625 * 4 2 1 31 31 H 1.09008 * 109.46966 * 42.45177 * 6 5 4 32 32 H 1.09001 * 109.47006 * 162.44641 * 6 5 4 33 33 H 0.96993 * 119.99977 * 185.00889 * 11 10 8 34 34 H 1.08997 * 117.50138 * 359.97438 * 16 7 6 35 35 H 1.08998 * 117.50264 * 145.02199 * 16 7 6 36 36 H 1.09005 * 117.49684 * 252.51107 * 17 16 7 37 37 H 1.09002 * 117.52171 * 107.48278 * 17 16 7 38 38 H 1.09003 * 109.50639 * 181.57009 * 18 5 4 39 39 H 1.08997 * 109.50467 * 61.43726 * 18 5 4 40 40 H 1.08999 * 109.54591 * 302.89933 * 20 19 18 41 41 H 1.08995 * 109.54980 * 63.17432 * 20 19 18 42 42 H 1.09001 * 109.52425 * 176.80120 * 21 20 19 43 43 H 1.08994 * 109.52085 * 297.00167 * 21 20 19 44 44 H 1.09004 * 109.47375 * 62.36109 * 22 21 20 45 45 H 1.08995 * 109.47534 * 182.37381 * 22 21 20 46 46 H 1.09006 * 109.48099 * 178.97654 * 24 23 22 47 47 H 1.08998 * 109.47950 * 58.94014 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0422 -0.7240 -1.2479 5 7 3.5103 -0.7875 -1.2043 6 6 4.0457 -1.4260 -2.4142 7 6 3.8695 -2.9423 -2.3113 8 6 4.8958 -3.6606 -1.4735 9 1 4.5896 -4.1998 -0.5893 10 6 6.2257 -3.6293 -1.8360 11 7 7.1551 -3.9223 -0.9527 12 14 6.7076 -3.1708 -3.5816 13 1 6.7916 -1.6929 -3.6999 14 1 8.0279 -3.7691 -3.9039 15 1 5.6862 -3.6860 -4.5285 16 6 3.3197 -3.6744 -3.5371 17 6 2.4402 -3.4881 -2.2990 18 6 3.9657 -1.4869 0.0061 19 6 3.4328 -0.7574 1.2409 20 6 4.0224 0.6546 1.2943 21 6 3.5423 1.3482 2.5732 22 6 3.9444 0.5023 3.7843 23 8 3.3873 -0.8073 3.6559 24 6 3.8368 -1.5222 2.5029 25 8 2.0077 -0.6760 1.1665 26 1 -0.3634 0.4349 0.9311 27 1 -0.3634 0.5889 -0.8421 28 1 -0.3634 -1.0238 -0.0888 29 1 1.6349 -1.7347 -1.2752 30 1 1.7278 -0.1804 -2.1388 31 1 3.5091 -1.0563 -3.2880 32 1 5.1052 -1.1892 -2.5114 33 1 8.0920 -3.8302 -1.1859 34 1 3.0831 -3.0758 -4.4167 35 1 3.7003 -4.6758 -3.7380 36 1 2.2423 -4.3670 -1.6854 37 1 1.6254 -2.7670 -2.3639 38 1 5.0554 -1.4979 0.0319 39 1 3.5908 -2.5104 -0.0021 40 1 5.1107 0.5954 1.2982 41 1 3.6898 1.2219 0.4250 42 1 4.0025 2.3334 2.6480 43 1 2.4577 1.4527 2.5457 44 1 5.0310 0.4318 3.8336 45 1 3.5687 0.9695 4.6946 46 1 3.3818 -2.5126 2.4890 47 1 4.9218 -1.6208 2.5365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602823273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:16 Heat of formation + Delta-G solvation = -50.203100 kcal Electronic energy + Delta-G solvation = -26846.508676 eV Core-core repulsion = 23416.552789 eV Total energy + Delta-G solvation = -3429.955887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37328 -38.29361 -36.94951 -33.92615 -33.32995 -32.27419 -32.06896 -29.82300 -27.25389 -26.23271 -25.35090 -24.90798 -22.67421 -21.90134 -21.69163 -20.63059 -18.97337 -18.82352 -16.65509 -16.36838 -15.91669 -15.47978 -15.15444 -14.91573 -14.78744 -14.66116 -14.24203 -13.72658 -13.58218 -13.05419 -12.72041 -12.60440 -12.48640 -12.36153 -12.22036 -11.85167 -11.79425 -11.71158 -11.30616 -11.09282 -10.94247 -10.79963 -10.73307 -10.62487 -10.42459 -10.31478 -10.11573 -9.89685 -9.55237 -9.13153 -9.06278 -8.97816 -8.74173 -8.40848 -7.47106 -6.19474 -4.12451 3.23305 3.34736 3.42631 3.88264 4.25072 4.36536 4.46961 4.86581 5.01572 5.08231 5.13013 5.17560 5.20703 5.26579 5.45582 5.53189 5.58199 5.63853 5.69524 5.70910 5.78654 5.85880 5.89957 5.95555 6.00799 6.02456 6.09137 6.15927 6.19338 6.24909 6.25121 6.32326 6.46938 6.48227 6.55176 6.63922 6.71108 6.79624 7.02150 7.06158 7.09662 7.42128 7.62193 7.71766 7.72370 7.82377 8.41864 8.82654 9.45243 10.89684 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.006571 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.483102 B = 4260.271053 C = 5173.754372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.059 0.941 4 C 0.005 3.995 5 N -0.524 5.524 6 C 0.085 3.915 7 C -0.025 4.025 8 C -0.488 4.488 9 H 0.075 0.925 10 C 0.085 3.915 11 N -0.886 5.886 12 Si 0.864 3.136 13 H -0.275 1.275 14 H -0.294 1.294 15 H -0.255 1.255 16 C -0.198 4.198 17 C -0.192 4.192 18 C 0.047 3.953 19 C 0.088 3.912 20 C -0.138 4.138 21 C -0.151 4.151 22 C 0.060 3.940 23 O -0.376 6.376 24 C 0.079 3.921 25 O -0.363 6.363 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.266 0.734 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 9.830 3.192 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.077 0.923 4 C -0.123 4.123 5 N -0.247 5.247 6 C -0.042 4.042 7 C -0.027 4.027 8 C -0.525 4.525 9 H 0.093 0.907 10 C -0.119 4.119 11 N -0.522 5.522 12 Si 0.691 3.309 13 H -0.201 1.201 14 H -0.220 1.220 15 H -0.179 1.179 16 C -0.236 4.236 17 C -0.228 4.228 18 C -0.081 4.081 19 C 0.048 3.952 20 C -0.175 4.175 21 C -0.189 4.189 22 C -0.017 4.017 23 O -0.294 6.294 24 C 0.002 3.998 25 O -0.283 6.283 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.993 10.079 3.510 13.334 hybrid contribution 0.494 -0.393 -1.614 1.733 sum -7.499 9.686 1.896 12.395 Atomic orbital electron populations 1.21715 0.93682 1.02574 1.01935 1.22073 0.93924 0.95633 0.85379 0.92349 1.23151 0.90337 1.01034 0.97801 1.62555 1.07084 1.52002 1.03080 1.21990 0.99984 0.91985 0.90271 1.20147 0.93016 0.92526 0.96993 1.20171 0.89693 1.32956 1.09696 0.90669 1.24861 0.96257 0.94103 0.96653 1.69922 1.00662 1.47703 1.33889 0.87065 0.77873 0.78825 0.87106 1.20134 1.22012 1.17923 1.23056 1.06609 1.02345 0.91598 1.22989 0.94535 1.02791 1.02531 1.22704 1.01819 0.96820 0.86782 1.22268 0.81362 0.95157 0.96424 1.22057 1.00946 0.96632 0.97896 1.22129 1.02267 0.98749 0.95770 1.22529 0.97336 0.83927 0.97863 1.87932 1.69898 1.27417 1.44198 1.22529 0.99177 0.95308 0.82758 1.88002 1.20301 1.78004 1.41987 0.91997 0.91572 0.92051 0.91883 0.91319 0.93350 0.90645 0.92462 0.91590 0.89821 0.90090 0.90266 0.88920 0.90752 0.91165 0.90220 0.91653 0.91034 0.93517 0.89545 0.88135 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.57 37.15 0.36 -1.38 16 2 C 0.09 1.32 3.03 -26.68 -0.08 1.24 16 3 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 4 C 0.01 0.08 4.33 -3.72 -0.02 0.07 16 5 N -0.52 -9.75 4.37 -234.35 -1.02 -10.77 16 6 C 0.09 1.74 5.15 -3.82 -0.02 1.72 16 7 C -0.02 -0.54 0.13 -155.66 -0.02 -0.56 16 8 C -0.49 -12.50 6.63 -34.44 -0.23 -12.72 16 9 H 0.08 2.13 7.62 -52.49 -0.40 1.73 16 10 C 0.09 2.27 5.33 -17.82 -0.10 2.17 16 11 N -0.89 -25.07 13.95 55.43 0.77 -24.30 16 12 Si 0.86 20.48 25.60 -169.99 -4.35 16.13 16 13 H -0.28 -6.39 6.69 56.52 0.38 -6.01 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.26 -5.86 6.08 56.52 0.34 -5.52 16 16 C -0.20 -4.07 7.97 -26.73 -0.21 -4.28 16 17 C -0.19 -3.77 8.45 -26.73 -0.23 -4.00 16 18 C 0.05 0.91 2.92 -3.75 -0.01 0.90 16 19 C 0.09 1.50 0.71 -90.57 -0.06 1.43 16 20 C -0.14 -2.09 4.40 -26.57 -0.12 -2.21 16 21 C -0.15 -1.98 5.98 -26.58 -0.16 -2.13 16 22 C 0.06 0.80 6.84 37.21 0.25 1.05 16 23 O -0.38 -6.16 10.70 -42.60 -0.46 -6.62 16 24 C 0.08 1.34 5.81 37.16 0.22 1.55 16 25 O -0.36 -6.27 9.34 -42.60 -0.40 -6.67 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.10 4.42 -51.93 -0.23 0.87 16 30 H 0.07 1.02 8.03 -51.93 -0.42 0.61 16 31 H 0.05 0.91 7.70 -51.92 -0.40 0.51 16 32 H 0.08 1.68 5.74 -51.93 -0.30 1.39 16 33 H 0.27 7.17 8.32 -40.82 -0.34 6.83 16 34 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.08 1.81 8.12 -51.93 -0.42 1.38 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.08 1.41 5.54 -51.93 -0.29 1.13 16 38 H 0.09 2.06 7.80 -51.93 -0.40 1.66 16 39 H 0.07 1.65 5.43 -51.93 -0.28 1.37 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.24 6.07 -51.93 -0.32 0.93 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.99 7.83 -51.93 -0.41 0.58 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -27.52 339.64 -8.82 -36.34 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.06 Total: 7.91 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.42 Total: -17.14 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.25 Total: -35.07 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.85 Total: -13.29 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.35 Total: 16.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.52 -8.82 -36.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602823273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.859 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds