Wall clock time and date at job start Tue Mar 31 2020 07:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.51325 * 2 1 4 4 C 1.53098 * 109.54924 * 239.87766 * 2 1 3 5 5 N 1.47007 * 109.29538 * 183.17144 * 4 2 1 6 6 C 1.46907 * 111.00023 * 182.39782 * 5 4 2 7 7 C 1.52991 * 109.47354 * 282.44799 * 6 5 4 8 8 C 1.50700 * 115.55240 * 279.89639 * 7 6 5 9 9 H 1.07998 * 120.00344 * 118.00517 * 8 7 6 10 10 C 1.37877 * 119.99634 * 298.01052 * 8 7 6 11 11 N 1.31519 * 120.00092 * 161.38223 * 10 8 7 12 12 Si 1.86806 * 120.00228 * 341.38058 * 10 8 7 13 13 H 1.48495 * 109.46985 * 85.18057 * 12 10 8 14 14 H 1.48496 * 109.46975 * 205.18453 * 12 10 8 15 15 H 1.48501 * 109.46743 * 325.18326 * 12 10 8 16 16 C 1.53001 * 117.49922 * 134.18680 * 7 6 5 17 17 C 1.53001 * 60.00006 * 252.51154 * 16 7 6 18 18 C 1.47035 * 110.74863 * 58.62779 * 5 4 2 19 19 C 1.53003 * 109.24793 * 301.50255 * 18 5 4 20 20 C 1.53106 * 109.49745 * 296.76090 * 19 18 5 21 21 C 1.53199 * 109.02301 * 183.03965 * 20 19 18 22 22 C 1.53096 * 109.14447 * 56.90257 * 21 20 19 23 23 O 1.42899 * 109.44612 * 302.36931 * 22 21 20 24 24 C 1.42920 * 114.09695 * 61.16231 * 23 22 21 25 25 O 1.42932 * 109.41612 * 56.73941 * 19 18 5 26 26 H 1.09006 * 109.47149 * 295.03737 * 1 2 3 27 27 H 1.08997 * 109.47608 * 55.03552 * 1 2 3 28 28 H 1.09000 * 109.47361 * 175.04162 * 1 2 3 29 29 H 1.09001 * 109.50430 * 303.12211 * 4 2 1 30 30 H 1.09005 * 109.50164 * 63.22625 * 4 2 1 31 31 H 1.09008 * 109.46966 * 42.45177 * 6 5 4 32 32 H 1.09001 * 109.47006 * 162.44641 * 6 5 4 33 33 H 0.96993 * 119.99977 * 185.00889 * 11 10 8 34 34 H 1.08997 * 117.50138 * 359.97438 * 16 7 6 35 35 H 1.08998 * 117.50264 * 145.02199 * 16 7 6 36 36 H 1.09005 * 117.49684 * 252.51107 * 17 16 7 37 37 H 1.09002 * 117.52171 * 107.48278 * 17 16 7 38 38 H 1.09003 * 109.50639 * 181.57009 * 18 5 4 39 39 H 1.08997 * 109.50467 * 61.43726 * 18 5 4 40 40 H 1.08999 * 109.54591 * 302.89933 * 20 19 18 41 41 H 1.08995 * 109.54980 * 63.17432 * 20 19 18 42 42 H 1.09001 * 109.52425 * 176.80120 * 21 20 19 43 43 H 1.08994 * 109.52085 * 297.00167 * 21 20 19 44 44 H 1.09004 * 109.47375 * 62.36109 * 22 21 20 45 45 H 1.08995 * 109.47534 * 182.37381 * 22 21 20 46 46 H 1.09006 * 109.48099 * 178.97654 * 24 23 22 47 47 H 1.08998 * 109.47950 * 58.94014 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0422 -0.7240 -1.2479 5 7 3.5103 -0.7875 -1.2043 6 6 4.0457 -1.4260 -2.4142 7 6 3.8695 -2.9423 -2.3113 8 6 4.8958 -3.6606 -1.4735 9 1 4.5896 -4.1998 -0.5893 10 6 6.2257 -3.6293 -1.8360 11 7 7.1551 -3.9223 -0.9527 12 14 6.7076 -3.1708 -3.5816 13 1 6.7916 -1.6929 -3.6999 14 1 8.0279 -3.7691 -3.9039 15 1 5.6862 -3.6860 -4.5285 16 6 3.3197 -3.6744 -3.5371 17 6 2.4402 -3.4881 -2.2990 18 6 3.9657 -1.4869 0.0061 19 6 3.4328 -0.7574 1.2409 20 6 4.0224 0.6546 1.2943 21 6 3.5423 1.3482 2.5732 22 6 3.9444 0.5023 3.7843 23 8 3.3873 -0.8073 3.6559 24 6 3.8368 -1.5222 2.5029 25 8 2.0077 -0.6760 1.1665 26 1 -0.3634 0.4349 0.9311 27 1 -0.3634 0.5889 -0.8421 28 1 -0.3634 -1.0238 -0.0888 29 1 1.6349 -1.7347 -1.2752 30 1 1.7278 -0.1804 -2.1388 31 1 3.5091 -1.0563 -3.2880 32 1 5.1052 -1.1892 -2.5114 33 1 8.0920 -3.8302 -1.1859 34 1 3.0831 -3.0758 -4.4167 35 1 3.7003 -4.6758 -3.7380 36 1 2.2423 -4.3670 -1.6854 37 1 1.6254 -2.7670 -2.3639 38 1 5.0554 -1.4979 0.0319 39 1 3.5908 -2.5104 -0.0021 40 1 5.1107 0.5954 1.2982 41 1 3.6898 1.2219 0.4250 42 1 4.0025 2.3334 2.6480 43 1 2.4577 1.4527 2.5457 44 1 5.0310 0.4318 3.8336 45 1 3.5687 0.9695 4.6946 46 1 3.3818 -2.5126 2.4890 47 1 4.9218 -1.6208 2.5365 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602823273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:15 Heat of formation + Delta-G solvation = -68.273643 kcal Electronic energy + Delta-G solvation = -26847.292274 eV Core-core repulsion = 23416.552789 eV Total energy + Delta-G solvation = -3430.739485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74415 -39.74264 -38.37461 -35.46231 -34.62044 -34.21953 -33.28702 -31.10823 -28.81973 -27.75871 -27.01392 -26.17787 -24.02092 -23.44197 -23.09118 -21.92788 -20.74877 -20.16024 -18.48419 -17.64883 -17.23961 -16.91532 -16.84223 -16.26890 -16.14719 -16.05396 -15.72636 -15.21029 -15.02082 -14.81191 -14.32855 -13.95888 -13.78270 -13.63006 -13.56375 -13.25661 -13.09082 -12.95624 -12.81857 -12.68518 -12.44325 -12.38076 -12.21654 -12.04388 -11.91754 -11.81271 -11.63872 -11.30100 -11.11526 -10.92653 -10.61072 -10.43395 -10.29511 -10.21225 -9.03323 -8.27234 -6.21653 1.33557 1.40551 1.51584 2.37769 2.61986 2.85106 2.99800 3.16589 3.37384 3.78216 3.86873 3.87108 3.98209 4.08572 4.10799 4.20442 4.28593 4.37569 4.39564 4.41480 4.45851 4.52709 4.55993 4.65552 4.72501 4.74616 4.77670 4.80205 4.92356 4.95464 4.98785 5.04697 5.07892 5.10444 5.18853 5.23533 5.32689 5.36103 5.38344 5.41543 5.46137 5.72118 6.09828 6.20575 6.24987 6.36553 6.44239 6.74334 7.37102 8.85723 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.006571 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.483102 B = 4260.271053 C = 5173.754372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.084 3.916 3 H 0.067 0.933 4 C 0.004 3.996 5 N -0.521 5.521 6 C 0.090 3.910 7 C -0.045 4.045 8 C -0.477 4.477 9 H 0.028 0.972 10 C 0.034 3.966 11 N -0.934 5.934 12 Si 0.919 3.081 13 H -0.264 1.264 14 H -0.302 1.302 15 H -0.237 1.237 16 C -0.190 4.190 17 C -0.175 4.175 18 C 0.064 3.936 19 C 0.094 3.906 20 C -0.133 4.133 21 C -0.142 4.142 22 C 0.051 3.949 23 O -0.390 6.390 24 C 0.082 3.918 25 O -0.377 6.377 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.113 0.887 46 H 0.084 0.916 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 12.502 1.778 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.027 3.973 3 H 0.085 0.915 4 C -0.123 4.123 5 N -0.244 5.244 6 C -0.038 4.038 7 C -0.047 4.047 8 C -0.514 4.514 9 H 0.046 0.954 10 C -0.165 4.165 11 N -0.572 5.572 12 Si 0.744 3.256 13 H -0.189 1.189 14 H -0.229 1.229 15 H -0.160 1.160 16 C -0.228 4.228 17 C -0.212 4.212 18 C -0.064 4.064 19 C 0.054 3.946 20 C -0.171 4.171 21 C -0.180 4.180 22 C -0.025 4.025 23 O -0.308 6.308 24 C 0.004 3.996 25 O -0.296 6.296 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.131 0.869 46 H 0.103 0.897 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.099 12.761 2.088 16.407 hybrid contribution 1.082 -1.253 -1.072 1.973 sum -9.017 11.507 1.015 14.655 Atomic orbital electron populations 1.21720 0.91220 1.02851 1.03482 1.22314 0.95756 0.95443 0.83827 0.91502 1.23274 0.88238 1.01015 0.99801 1.62544 1.08957 1.50941 1.01916 1.21886 0.99295 0.90678 0.91967 1.20038 0.93346 0.93354 0.97957 1.20212 0.90811 1.31919 1.08450 0.95370 1.25559 0.96268 0.94630 1.00024 1.70058 1.00894 1.50386 1.35910 0.86178 0.77412 0.79134 0.82848 1.18907 1.22900 1.16019 1.23076 1.05753 1.01706 0.92248 1.22992 0.94180 1.02494 1.01545 1.22325 0.99357 0.95693 0.89052 1.22095 0.81734 0.96073 0.94682 1.21998 1.00385 0.95308 0.99400 1.22080 1.02141 0.99668 0.94064 1.22831 0.97931 0.82517 0.99231 1.87908 1.70316 1.29064 1.43545 1.22377 0.98609 0.95045 0.83570 1.88000 1.19859 1.78543 1.43232 0.91455 0.88808 0.92641 0.93013 0.88679 0.90485 0.92959 0.92689 0.88612 0.91208 0.91622 0.87439 0.92707 0.94259 0.91884 0.90166 0.88834 0.91330 0.92877 0.86861 0.89741 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.57 71.98 0.69 -2.16 16 2 C 0.08 2.30 3.03 30.62 0.09 2.40 16 3 H 0.07 1.75 6.43 -2.39 -0.02 1.73 16 4 C 0.00 0.13 4.33 86.32 0.37 0.51 16 5 N -0.52 -18.86 4.37 -895.35 -3.91 -22.77 16 6 C 0.09 3.52 5.15 86.30 0.44 3.96 16 7 C -0.04 -1.93 0.13 -52.93 -0.01 -1.94 16 8 C -0.48 -25.53 6.63 25.60 0.17 -25.36 16 9 H 0.03 1.73 7.62 -2.91 -0.02 1.71 16 10 C 0.03 1.89 5.33 84.65 0.45 2.35 16 11 N -0.93 -55.78 13.95 21.45 0.30 -55.48 16 12 Si 0.92 42.57 25.60 68.60 1.76 44.33 16 13 H -0.26 -11.67 6.69 99.48 0.67 -11.00 16 14 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 15 H -0.24 -10.18 6.08 99.48 0.60 -9.58 16 16 C -0.19 -7.37 7.97 30.60 0.24 -7.12 16 17 C -0.18 -6.69 8.45 30.60 0.26 -6.43 16 18 C 0.06 2.63 2.92 86.28 0.25 2.88 16 19 C 0.09 3.25 0.71 -10.76 -0.01 3.24 16 20 C -0.13 -3.92 4.40 30.70 0.13 -3.78 16 21 C -0.14 -3.37 5.98 30.69 0.18 -3.18 16 22 C 0.05 1.26 6.84 72.01 0.49 1.75 16 23 O -0.39 -12.70 10.70 -141.94 -1.52 -14.22 16 24 C 0.08 2.88 5.81 71.98 0.42 3.29 16 25 O -0.38 -12.67 9.34 -141.94 -1.33 -13.99 16 26 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.69 4.42 -2.39 -0.01 1.68 16 30 H 0.09 2.39 8.03 -2.38 -0.02 2.37 16 31 H 0.08 2.58 7.70 -2.38 -0.02 2.57 16 32 H 0.05 2.29 5.74 -2.39 -0.01 2.27 16 33 H 0.26 15.00 8.32 -92.71 -0.77 14.23 16 34 H 0.10 3.19 8.08 -2.39 -0.02 3.17 16 35 H 0.07 2.91 8.12 -2.39 -0.02 2.89 16 36 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 37 H 0.11 3.51 5.54 -2.39 -0.01 3.50 16 38 H 0.05 2.62 7.80 -2.39 -0.02 2.60 16 39 H 0.04 1.86 5.43 -2.39 -0.01 1.85 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 2.34 6.07 -2.39 -0.01 2.33 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.70 7.83 -2.39 -0.02 1.68 16 44 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 47 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -62.57 339.64 0.28 -62.28 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.80 Total: 29.46 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 4.19 Total: -29.60 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -3.61 Total: -78.25 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -2.84 Total: -28.21 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.76 Total: 44.33 kcal Total: -62.57 0.28 -62.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602823273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.992 kcal (2) G-P(sol) polarization free energy of solvation -62.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds