Wall clock time and date at job start Tue Mar 31 2020 07:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.50865 * 2 1 4 4 C 1.53103 * 109.50669 * 120.09251 * 2 1 3 5 5 N 1.47010 * 109.29312 * 176.79841 * 4 2 1 6 6 C 1.46908 * 110.99821 * 177.60283 * 5 4 2 7 7 C 1.53002 * 109.46571 * 74.37352 * 6 5 4 8 8 C 1.50698 * 115.54851 * 295.07010 * 7 6 5 9 9 H 1.07998 * 119.99649 * 143.37550 * 8 7 6 10 10 C 1.37874 * 120.00243 * 323.37195 * 8 7 6 11 11 N 1.31513 * 119.99941 * 348.92781 * 10 8 7 12 12 Si 1.86803 * 120.00019 * 168.91719 * 10 8 7 13 13 H 1.48499 * 109.46992 * 65.05845 * 12 10 8 14 14 H 1.48500 * 109.47296 * 185.05943 * 12 10 8 15 15 H 1.48503 * 109.47362 * 305.06021 * 12 10 8 16 16 C 1.53002 * 117.49479 * 149.40813 * 7 6 5 17 17 C 1.52997 * 117.49970 * 80.74642 * 7 6 5 18 18 C 1.47025 * 110.74973 * 301.37718 * 5 4 2 19 19 C 1.53009 * 109.24341 * 58.50549 * 18 5 4 20 20 C 1.53104 * 109.49544 * 63.22370 * 19 18 5 21 21 C 1.53192 * 109.02920 * 176.94490 * 20 19 18 22 22 C 1.53093 * 109.14646 * 303.09687 * 21 20 19 23 23 O 1.42897 * 109.44414 * 57.63748 * 22 21 20 24 24 C 1.42929 * 114.09615 * 298.83466 * 23 22 21 25 25 O 1.42941 * 109.41213 * 303.24342 * 19 18 5 26 26 H 1.09001 * 109.46851 * 299.90680 * 1 2 3 27 27 H 1.09007 * 109.46806 * 179.90938 * 1 2 3 28 28 H 1.08996 * 109.47040 * 59.91164 * 1 2 3 29 29 H 1.09002 * 109.49970 * 296.74379 * 4 2 1 30 30 H 1.09001 * 109.50235 * 56.85637 * 4 2 1 31 31 H 1.09002 * 109.46969 * 194.37197 * 6 5 4 32 32 H 1.08994 * 109.46852 * 314.37207 * 6 5 4 33 33 H 0.97001 * 119.99582 * 185.01405 * 11 10 8 34 34 H 1.08998 * 117.49984 * 359.97438 * 16 7 6 35 35 H 1.08997 * 117.50261 * 145.01785 * 16 7 6 36 36 H 1.08995 * 117.49751 * 214.97400 * 17 7 6 37 37 H 1.09004 * 117.50241 * 359.97400 * 17 7 6 38 38 H 1.09000 * 109.51201 * 178.43279 * 18 5 4 39 39 H 1.09003 * 109.51234 * 298.52702 * 18 5 4 40 40 H 1.09000 * 109.54397 * 296.80927 * 20 19 18 41 41 H 1.08997 * 109.54513 * 57.08051 * 20 19 18 42 42 H 1.09004 * 109.52210 * 62.99752 * 21 20 19 43 43 H 1.09007 * 109.52741 * 183.19287 * 21 20 19 44 44 H 1.09001 * 109.47623 * 177.63103 * 22 21 20 45 45 H 1.08998 * 109.47289 * 297.63726 * 22 21 20 46 46 H 1.09000 * 109.47606 * 301.05795 * 24 23 22 47 47 H 1.08998 * 109.47986 * 181.02111 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7236 1.2486 5 7 3.5093 -0.7883 1.2057 6 6 4.0438 -1.4264 2.4162 7 6 3.7951 -2.9346 2.3497 8 6 2.3484 -3.3563 2.3698 9 1 2.0237 -4.2000 1.7789 10 6 1.4395 -2.6651 3.1425 11 7 1.8609 -1.7844 4.0236 12 14 -0.3904 -2.9793 2.9376 13 1 -0.7022 -4.3725 3.3463 14 1 -1.1538 -2.0312 3.7883 15 1 -0.7701 -2.7840 1.5153 16 6 4.8071 -3.8486 3.0435 17 6 4.7642 -3.7743 1.5151 18 6 3.9646 -1.4887 -0.0041 19 6 3.4328 -0.7593 -1.2395 20 6 4.0234 0.6523 -1.2931 21 6 3.5449 1.3456 -2.5726 22 6 3.9474 0.4991 -3.7831 23 8 3.3891 -0.8100 -3.6547 24 6 3.8371 -1.5249 -2.5010 25 8 2.0077 -0.6770 -1.1659 26 1 -0.3633 0.5124 0.8908 27 1 -0.3633 -1.0278 -0.0016 28 1 -0.3633 0.5152 -0.8892 29 1 1.7269 -0.1791 2.1390 30 1 1.6332 -1.7340 1.2764 31 1 5.1152 -1.2374 2.4837 32 1 3.5461 -1.0144 3.2940 33 1 1.2278 -1.3514 4.6174 34 1 5.6502 -3.3755 3.5469 35 1 4.4266 -4.7552 3.5141 36 1 4.3555 -4.6320 0.9809 37 1 5.5788 -3.2523 1.0130 38 1 5.0543 -1.5007 -0.0295 39 1 3.5895 -2.5121 0.0048 40 1 3.6905 1.2201 -0.4243 41 1 5.1117 0.5923 -1.2960 42 1 2.4603 1.4510 -2.5461 43 1 4.0058 2.3306 -2.6474 44 1 3.5729 0.9662 -4.6939 45 1 5.0339 0.4278 -3.8315 46 1 4.9220 -1.6245 -2.5338 47 1 3.3812 -2.5149 -2.4871 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602823274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:19 Heat of formation + Delta-G solvation = -49.984247 kcal Electronic energy + Delta-G solvation = -27183.502840 eV Core-core repulsion = 23753.556443 eV Total energy + Delta-G solvation = -3429.946397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24603 -38.12555 -36.75095 -33.63205 -33.32998 -32.42830 -31.90976 -29.66806 -26.36875 -26.03048 -25.67101 -24.87804 -22.56742 -21.73913 -21.08799 -20.56704 -19.07741 -18.64171 -16.51005 -16.21271 -15.87328 -15.44967 -14.96705 -14.92140 -14.51081 -14.34314 -14.16280 -13.80371 -13.46674 -12.93492 -12.61982 -12.46220 -12.38370 -12.09349 -11.92456 -11.67837 -11.58215 -11.49705 -11.18176 -10.95229 -10.88708 -10.72612 -10.59670 -10.42533 -10.36222 -10.06472 -9.92718 -9.90674 -9.54940 -9.13752 -9.03602 -8.90987 -8.66795 -8.06410 -7.08933 -6.15213 -4.15589 3.18484 3.24642 3.29549 3.91462 4.23341 4.29695 4.75946 4.94530 5.00700 5.07615 5.13158 5.27478 5.44217 5.49109 5.53492 5.59473 5.71696 5.80032 5.85382 5.87401 5.89843 6.02085 6.06258 6.08489 6.17525 6.28112 6.33934 6.37017 6.43100 6.51666 6.55962 6.60609 6.64373 6.69004 6.77404 6.87423 6.97497 7.22692 7.33396 7.35719 7.42875 7.51042 7.84904 7.90585 8.11584 8.21077 8.40830 8.75141 9.35937 10.81495 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.007032 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.307584 B = 3980.956612 C = 4797.337573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.050 0.950 4 C 0.010 3.990 5 N -0.519 5.519 6 C 0.080 3.920 7 C 0.027 3.973 8 C -0.489 4.489 9 H 0.058 0.942 10 C 0.081 3.919 11 N -0.873 5.873 12 Si 0.876 3.124 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.265 1.265 16 C -0.202 4.202 17 C -0.212 4.212 18 C 0.030 3.970 19 C 0.092 3.908 20 C -0.136 4.136 21 C -0.152 4.152 22 C 0.061 3.939 23 O -0.375 6.375 24 C 0.078 3.922 25 O -0.363 6.363 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.128 0.872 33 H 0.265 0.735 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.061 0.939 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 5.736 -9.266 11.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.068 0.932 4 C -0.118 4.118 5 N -0.241 5.241 6 C -0.047 4.047 7 C 0.026 3.974 8 C -0.526 4.526 9 H 0.076 0.924 10 C -0.122 4.122 11 N -0.510 5.510 12 Si 0.702 3.298 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.190 1.190 16 C -0.241 4.241 17 C -0.249 4.249 18 C -0.099 4.099 19 C 0.051 3.949 20 C -0.174 4.174 21 C -0.190 4.190 22 C -0.015 4.015 23 O -0.293 6.293 24 C 0.001 3.999 25 O -0.283 6.283 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.836 6.279 -9.447 11.693 hybrid contribution -0.711 -0.906 0.559 1.280 sum 2.125 5.373 -8.889 10.602 Atomic orbital electron populations 1.21731 0.94157 1.02819 1.01332 1.22283 0.93819 0.95256 0.86203 0.93183 1.23294 0.88804 1.03882 0.95820 1.62619 1.09452 1.50253 1.01781 1.22038 0.96506 0.92060 0.94139 1.19678 0.90724 0.90899 0.96138 1.20445 0.90645 1.13985 1.27485 0.92400 1.24885 0.98587 0.94312 0.94425 1.69728 1.34403 1.27594 1.19252 0.86936 0.85353 0.78450 0.79041 1.20277 1.20733 1.19019 1.22926 1.03790 1.04251 0.93137 1.22965 1.04135 1.04293 0.93537 1.22655 0.99035 0.97873 0.90319 1.22057 0.82574 0.94884 0.95345 1.22039 1.00247 0.96922 0.98208 1.22134 1.02622 0.98675 0.95578 1.22533 0.97002 0.83917 0.98094 1.87947 1.69940 1.27501 1.43883 1.22538 0.98270 0.95650 0.83435 1.87975 1.19169 1.78254 1.42858 0.91596 0.91864 0.92597 0.90466 0.88305 0.95046 0.85480 0.92455 0.91832 0.90755 0.91001 0.91499 0.91831 0.91767 0.89806 0.91727 0.90792 0.91625 0.89469 0.93741 0.92106 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.57 37.16 0.36 -2.10 16 2 C 0.08 1.54 3.03 -26.68 -0.08 1.46 16 3 H 0.05 0.91 6.43 -51.93 -0.33 0.57 16 4 C 0.01 0.20 3.30 -3.71 -0.01 0.19 16 5 N -0.52 -10.73 4.37 -234.35 -1.02 -11.75 16 6 C 0.08 1.80 5.25 -3.82 -0.02 1.78 16 7 C 0.03 0.64 1.09 -155.66 -0.17 0.47 16 8 C -0.49 -12.47 7.01 -34.44 -0.24 -12.72 16 9 H 0.06 1.53 7.84 -52.49 -0.41 1.12 16 10 C 0.08 2.03 3.05 -17.82 -0.05 1.98 16 11 N -0.87 -22.22 9.66 55.43 0.54 -21.68 16 12 Si 0.88 19.84 28.81 -169.99 -4.90 14.94 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 15 H -0.27 -5.94 6.94 56.52 0.39 -5.55 16 16 C -0.20 -4.50 9.93 -26.69 -0.26 -4.76 16 17 C -0.21 -4.44 7.67 -26.69 -0.20 -4.65 16 18 C 0.03 0.57 2.98 -3.75 -0.01 0.56 16 19 C 0.09 1.57 0.71 -90.56 -0.06 1.50 16 20 C -0.14 -2.05 4.40 -26.58 -0.12 -2.17 16 21 C -0.15 -2.00 5.98 -26.58 -0.16 -2.15 16 22 C 0.06 0.77 6.84 37.21 0.25 1.02 16 23 O -0.37 -5.88 10.70 -42.55 -0.46 -6.33 16 24 C 0.08 1.21 5.81 37.16 0.22 1.42 16 25 O -0.36 -7.01 9.35 -42.55 -0.40 -7.41 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.18 7.98 -51.92 -0.41 0.77 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.75 7.19 -51.93 -0.37 1.38 16 30 H 0.10 2.37 3.52 -51.93 -0.18 2.19 16 31 H 0.03 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.13 3.18 5.29 -51.93 -0.27 2.91 16 33 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.07 1.29 7.08 -51.93 -0.37 0.92 16 38 H 0.06 1.13 7.39 -51.93 -0.38 0.75 16 39 H 0.06 1.37 5.73 -51.93 -0.30 1.07 16 40 H 0.08 1.38 6.07 -51.93 -0.32 1.07 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.08 7.83 -51.93 -0.41 0.67 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -25.98 338.97 -9.68 -35.66 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.98 Total: 9.63 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -0.57 Total: -18.17 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: -0.49 Total: -33.43 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.85 Total: -13.74 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.90 Total: 14.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -25.98 -9.68 -35.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602823274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.327 kcal (2) G-P(sol) polarization free energy of solvation -25.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds