Wall clock time and date at job start Tue Mar 31 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.50865 * 2 1 4 4 C 1.53103 * 109.50669 * 120.09251 * 2 1 3 5 5 N 1.47010 * 109.29312 * 176.79841 * 4 2 1 6 6 C 1.46908 * 110.99821 * 177.60283 * 5 4 2 7 7 C 1.53002 * 109.46571 * 74.37352 * 6 5 4 8 8 C 1.50698 * 115.54851 * 295.07010 * 7 6 5 9 9 H 1.07998 * 119.99649 * 143.37550 * 8 7 6 10 10 C 1.37874 * 120.00243 * 323.37195 * 8 7 6 11 11 N 1.31513 * 119.99941 * 348.92781 * 10 8 7 12 12 Si 1.86803 * 120.00019 * 168.91719 * 10 8 7 13 13 H 1.48499 * 109.46992 * 65.05845 * 12 10 8 14 14 H 1.48500 * 109.47296 * 185.05943 * 12 10 8 15 15 H 1.48503 * 109.47362 * 305.06021 * 12 10 8 16 16 C 1.53002 * 117.49479 * 149.40813 * 7 6 5 17 17 C 1.52997 * 117.49970 * 80.74642 * 7 6 5 18 18 C 1.47025 * 110.74973 * 301.37718 * 5 4 2 19 19 C 1.53009 * 109.24341 * 58.50549 * 18 5 4 20 20 C 1.53104 * 109.49544 * 63.22370 * 19 18 5 21 21 C 1.53192 * 109.02920 * 176.94490 * 20 19 18 22 22 C 1.53093 * 109.14646 * 303.09687 * 21 20 19 23 23 O 1.42897 * 109.44414 * 57.63748 * 22 21 20 24 24 C 1.42929 * 114.09615 * 298.83466 * 23 22 21 25 25 O 1.42941 * 109.41213 * 303.24342 * 19 18 5 26 26 H 1.09001 * 109.46851 * 299.90680 * 1 2 3 27 27 H 1.09007 * 109.46806 * 179.90938 * 1 2 3 28 28 H 1.08996 * 109.47040 * 59.91164 * 1 2 3 29 29 H 1.09002 * 109.49970 * 296.74379 * 4 2 1 30 30 H 1.09001 * 109.50235 * 56.85637 * 4 2 1 31 31 H 1.09002 * 109.46969 * 194.37197 * 6 5 4 32 32 H 1.08994 * 109.46852 * 314.37207 * 6 5 4 33 33 H 0.97001 * 119.99582 * 185.01405 * 11 10 8 34 34 H 1.08998 * 117.49984 * 359.97438 * 16 7 6 35 35 H 1.08997 * 117.50261 * 145.01785 * 16 7 6 36 36 H 1.08995 * 117.49751 * 214.97400 * 17 7 6 37 37 H 1.09004 * 117.50241 * 359.97400 * 17 7 6 38 38 H 1.09000 * 109.51201 * 178.43279 * 18 5 4 39 39 H 1.09003 * 109.51234 * 298.52702 * 18 5 4 40 40 H 1.09000 * 109.54397 * 296.80927 * 20 19 18 41 41 H 1.08997 * 109.54513 * 57.08051 * 20 19 18 42 42 H 1.09004 * 109.52210 * 62.99752 * 21 20 19 43 43 H 1.09007 * 109.52741 * 183.19287 * 21 20 19 44 44 H 1.09001 * 109.47623 * 177.63103 * 22 21 20 45 45 H 1.08998 * 109.47289 * 297.63726 * 22 21 20 46 46 H 1.09000 * 109.47606 * 301.05795 * 24 23 22 47 47 H 1.08998 * 109.47986 * 181.02111 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7236 1.2486 5 7 3.5093 -0.7883 1.2057 6 6 4.0438 -1.4264 2.4162 7 6 3.7951 -2.9346 2.3497 8 6 2.3484 -3.3563 2.3698 9 1 2.0237 -4.2000 1.7789 10 6 1.4395 -2.6651 3.1425 11 7 1.8609 -1.7844 4.0236 12 14 -0.3904 -2.9793 2.9376 13 1 -0.7022 -4.3725 3.3463 14 1 -1.1538 -2.0312 3.7883 15 1 -0.7701 -2.7840 1.5153 16 6 4.8071 -3.8486 3.0435 17 6 4.7642 -3.7743 1.5151 18 6 3.9646 -1.4887 -0.0041 19 6 3.4328 -0.7593 -1.2395 20 6 4.0234 0.6523 -1.2931 21 6 3.5449 1.3456 -2.5726 22 6 3.9474 0.4991 -3.7831 23 8 3.3891 -0.8100 -3.6547 24 6 3.8371 -1.5249 -2.5010 25 8 2.0077 -0.6770 -1.1659 26 1 -0.3633 0.5124 0.8908 27 1 -0.3633 -1.0278 -0.0016 28 1 -0.3633 0.5152 -0.8892 29 1 1.7269 -0.1791 2.1390 30 1 1.6332 -1.7340 1.2764 31 1 5.1152 -1.2374 2.4837 32 1 3.5461 -1.0144 3.2940 33 1 1.2278 -1.3514 4.6174 34 1 5.6502 -3.3755 3.5469 35 1 4.4266 -4.7552 3.5141 36 1 4.3555 -4.6320 0.9809 37 1 5.5788 -3.2523 1.0130 38 1 5.0543 -1.5007 -0.0295 39 1 3.5895 -2.5121 0.0048 40 1 3.6905 1.2201 -0.4243 41 1 5.1117 0.5923 -1.2960 42 1 2.4603 1.4510 -2.5461 43 1 4.0058 2.3306 -2.6474 44 1 3.5729 0.9662 -4.6939 45 1 5.0339 0.4278 -3.8315 46 1 4.9220 -1.6245 -2.5338 47 1 3.3812 -2.5149 -2.4871 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602823274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:18 Heat of formation + Delta-G solvation = -65.226416 kcal Electronic energy + Delta-G solvation = -27184.163790 eV Core-core repulsion = 23753.556443 eV Total energy + Delta-G solvation = -3430.607347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63806 -39.57413 -38.27013 -35.28866 -34.80421 -34.07872 -33.20164 -31.05111 -27.99599 -27.75069 -27.28581 -26.07528 -23.93421 -23.30308 -22.72562 -21.89501 -20.89197 -20.07317 -18.20409 -17.57962 -17.16790 -16.87766 -16.75392 -16.14809 -16.00577 -15.81676 -15.69197 -15.46124 -14.85686 -14.61358 -14.06342 -13.86627 -13.68517 -13.52733 -13.36167 -13.21568 -13.17256 -12.97985 -12.86792 -12.53690 -12.40196 -12.21710 -12.13143 -12.00047 -11.89326 -11.73929 -11.44170 -11.33905 -11.09355 -10.91058 -10.70382 -10.28441 -10.22057 -9.88020 -8.80260 -8.08583 -6.12976 1.33093 1.38029 1.43957 2.34421 2.67040 2.94252 3.09120 3.32605 3.66286 3.83996 3.90218 3.95100 4.07557 4.18353 4.29745 4.34340 4.38978 4.44134 4.48252 4.54835 4.58522 4.58749 4.72530 4.73745 4.78168 4.80710 4.88334 4.92191 4.97667 5.00660 5.02467 5.09551 5.16191 5.18863 5.27781 5.36752 5.39050 5.48445 5.52885 5.56932 5.71987 6.00315 6.25945 6.31997 6.44938 6.48829 6.61153 6.78762 7.39806 8.86294 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.007032 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.307584 B = 3980.956612 C = 4797.337573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 H 0.060 0.940 4 C 0.018 3.982 5 N -0.514 5.514 6 C 0.087 3.913 7 C 0.006 3.994 8 C -0.505 4.505 9 H 0.038 0.962 10 C 0.061 3.939 11 N -0.885 5.885 12 Si 0.912 3.088 13 H -0.282 1.282 14 H -0.274 1.274 15 H -0.264 1.264 16 C -0.206 4.206 17 C -0.187 4.187 18 C 0.036 3.964 19 C 0.087 3.913 20 C -0.132 4.132 21 C -0.146 4.146 22 C 0.056 3.944 23 O -0.394 6.394 24 C 0.081 3.919 25 O -0.378 6.378 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.102 0.898 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 6.985 -10.923 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.029 3.971 3 H 0.078 0.922 4 C -0.110 4.110 5 N -0.236 5.236 6 C -0.041 4.041 7 C 0.004 3.996 8 C -0.542 4.542 9 H 0.056 0.944 10 C -0.142 4.142 11 N -0.523 5.523 12 Si 0.738 3.262 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.189 1.189 16 C -0.245 4.245 17 C -0.224 4.224 18 C -0.093 4.093 19 C 0.047 3.953 20 C -0.170 4.170 21 C -0.184 4.184 22 C -0.020 4.020 23 O -0.312 6.312 24 C 0.003 3.997 25 O -0.298 6.298 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.898 7.529 -11.111 13.976 hybrid contribution -1.011 -1.307 1.063 1.964 sum 2.887 6.222 -10.048 12.166 Atomic orbital electron populations 1.21736 0.93139 1.01969 1.02920 1.22239 0.94686 0.95219 0.84962 0.92169 1.23085 0.89181 1.02287 0.96410 1.62630 1.08985 1.50040 1.01916 1.21836 0.96654 0.91447 0.94131 1.19711 0.90097 0.91665 0.98139 1.20503 0.92336 1.13825 1.27534 0.94415 1.25208 1.00707 0.94130 0.94113 1.69824 1.34993 1.27915 1.19524 0.86369 0.82768 0.78040 0.79029 1.20812 1.19923 1.18925 1.22933 1.03786 1.03529 0.94257 1.22911 1.03438 1.03350 0.92729 1.22637 0.99755 0.96541 0.90365 1.22252 0.81502 0.96378 0.95140 1.21984 1.01027 0.95250 0.98693 1.22100 1.01623 0.99941 0.94739 1.22780 0.98326 0.82388 0.98524 1.87927 1.70746 1.29026 1.43548 1.22517 0.99591 0.94876 0.82672 1.87969 1.20778 1.78438 1.42637 0.90549 0.93845 0.90495 0.92432 0.91014 0.94087 0.88055 0.92519 0.90486 0.91985 0.91405 0.89282 0.90350 0.94419 0.91469 0.90130 0.92599 0.88993 0.87534 0.91627 0.89542 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.57 71.98 0.69 -4.03 16 2 C 0.09 3.21 3.03 30.63 0.09 3.31 16 3 H 0.06 2.12 6.43 -2.39 -0.02 2.10 16 4 C 0.02 0.80 3.30 86.32 0.29 1.08 16 5 N -0.51 -21.05 4.37 -895.33 -3.91 -24.96 16 6 C 0.09 3.92 5.25 86.30 0.45 4.38 16 7 C 0.01 0.26 1.09 -52.93 -0.06 0.20 16 8 C -0.50 -26.39 7.01 25.60 0.18 -26.21 16 9 H 0.04 2.07 7.84 -2.91 -0.02 2.05 16 10 C 0.06 3.09 3.05 84.65 0.26 3.35 16 11 N -0.89 -45.90 9.66 21.45 0.21 -45.69 16 12 Si 0.91 41.30 28.81 68.60 1.98 43.28 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.26 -11.85 6.94 99.48 0.69 -11.16 16 16 C -0.21 -9.09 9.93 30.62 0.30 -8.78 16 17 C -0.19 -7.67 7.67 30.62 0.23 -7.43 16 18 C 0.04 1.31 2.98 86.28 0.26 1.57 16 19 C 0.09 2.83 0.71 -10.75 -0.01 2.83 16 20 C -0.13 -3.62 4.40 30.69 0.13 -3.49 16 21 C -0.15 -3.37 5.98 30.69 0.18 -3.18 16 22 C 0.06 1.20 6.84 72.01 0.49 1.69 16 23 O -0.39 -11.38 10.70 -141.98 -1.52 -12.90 16 24 C 0.08 2.32 5.81 71.98 0.42 2.74 16 25 O -0.38 -14.32 9.35 -141.98 -1.33 -15.65 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 27 H 0.04 1.61 7.98 -2.38 -0.02 1.59 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.67 7.19 -2.39 -0.02 2.65 16 30 H 0.07 3.52 3.52 -2.39 -0.01 3.52 16 31 H 0.04 1.73 8.09 -2.39 -0.02 1.71 16 32 H 0.10 5.15 5.29 -2.39 -0.01 5.14 16 33 H 0.26 13.25 8.32 -92.71 -0.77 12.48 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.09 3.23 7.08 -2.39 -0.02 3.22 16 38 H 0.08 2.61 7.39 -2.39 -0.02 2.59 16 39 H 0.04 1.59 5.73 -2.39 -0.01 1.58 16 40 H 0.07 2.08 6.07 -2.39 -0.01 2.06 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 1.50 7.83 -2.39 -0.02 1.48 16 43 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16 44 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -56.18 338.97 0.27 -55.91 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.92 Total: 32.00 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.92 Total: -32.00 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -3.70 Total: -70.65 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -2.85 Total: -28.54 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.98 Total: 43.28 kcal Total: -56.18 0.27 -55.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602823274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.315 kcal (2) G-P(sol) polarization free energy of solvation -56.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds