Wall clock time and date at job start Tue Mar 31 2020 07:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99926 * 2 1 4 4 O 1.20819 * 120.00232 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99803 * 179.97438 * 3 2 1 6 6 N 1.46903 * 109.47217 * 319.81230 * 5 3 2 7 7 C 1.46895 * 110.99670 * 303.06774 * 6 5 3 8 8 C 1.53002 * 109.46912 * 185.43943 * 7 6 5 9 9 C 1.50698 * 115.56341 * 330.12732 * 8 7 6 10 10 H 1.08001 * 120.00135 * 269.20943 * 9 8 7 11 11 C 1.37879 * 120.00161 * 89.20809 * 9 8 7 12 12 N 1.31521 * 119.99867 * 4.80856 * 11 9 8 13 13 Si 1.86800 * 120.00403 * 184.80851 * 11 9 8 14 14 H 1.48506 * 109.46917 * 59.99927 * 13 11 9 15 15 H 1.48491 * 109.47096 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46882 * 299.99873 * 13 11 9 17 17 C 1.52999 * 117.49752 * 115.81608 * 8 7 6 18 18 C 1.52994 * 60.00070 * 107.48967 * 17 8 7 19 19 C 1.52992 * 109.47233 * 199.80995 * 5 3 2 20 20 C 1.53002 * 109.47169 * 299.99846 * 19 5 3 21 21 C 1.52992 * 109.47520 * 300.00195 * 20 19 5 22 22 H 1.08999 * 109.47108 * 300.00181 * 21 20 19 23 23 C 1.52999 * 109.47265 * 179.97438 * 21 20 19 24 24 C 1.53006 * 109.47093 * 59.99750 * 21 20 19 25 25 C 1.52999 * 109.46880 * 300.00009 * 24 21 20 26 26 H 1.09002 * 109.46879 * 59.99918 * 1 2 3 27 27 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47066 * 300.00399 * 1 2 3 29 29 H 1.00907 * 111.00088 * 67.01966 * 6 5 3 30 30 H 1.09001 * 109.47180 * 65.44205 * 7 6 5 31 31 H 1.08994 * 109.47560 * 305.43763 * 7 6 5 32 32 H 0.96999 * 120.00157 * 175.00227 * 12 11 9 33 33 H 1.09006 * 117.49852 * 214.97710 * 17 8 7 34 34 H 1.09002 * 117.50087 * 0.02562 * 17 8 7 35 35 H 1.08997 * 117.50185 * 252.50760 * 18 17 8 36 36 H 1.09003 * 117.51836 * 107.48006 * 18 17 8 37 37 H 1.08993 * 109.47266 * 60.00216 * 19 5 3 38 38 H 1.08999 * 109.47243 * 180.02562 * 19 5 3 39 39 H 1.09001 * 109.46992 * 179.97438 * 20 19 5 40 40 H 1.09003 * 109.46664 * 60.00681 * 20 19 5 41 41 H 1.08995 * 109.47270 * 299.99981 * 23 21 20 42 42 H 1.09002 * 109.47067 * 60.00494 * 23 21 20 43 43 H 1.09002 * 109.47256 * 179.97438 * 23 21 20 44 44 H 1.09002 * 109.47094 * 180.02562 * 24 21 20 45 45 H 1.08999 * 109.46792 * 60.00237 * 24 21 20 46 46 H 1.08995 * 109.47270 * 300.00115 * 25 24 21 47 47 H 1.09001 * 109.46730 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1104 0.2440 0.8947 7 6 3.5716 0.3883 2.2537 8 6 4.2601 -0.6122 3.1842 9 6 4.7217 -1.8920 2.5359 10 1 4.0645 -2.7484 2.5036 11 6 5.9828 -1.9694 1.9840 12 7 6.8171 -0.9601 2.1060 13 14 6.5065 -3.5079 1.0630 14 1 5.5964 -3.7288 -0.0895 15 1 7.8971 -3.3404 0.5700 16 1 6.4420 -4.6774 1.9760 17 6 5.1154 -0.0474 4.3202 18 6 3.7624 -0.6916 4.6287 19 6 4.0045 2.6568 0.4893 20 6 3.4380 3.7304 -0.4420 21 6 3.9611 3.5020 -1.8615 22 1 5.0496 3.5589 -1.8611 23 6 3.3940 4.5752 -2.7929 24 6 3.5229 2.1199 -2.3503 25 6 4.0896 1.0463 -1.4190 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.9325 -0.6804 0.5314 30 1 2.4990 0.1946 2.2417 31 1 3.7538 1.4017 2.6111 32 1 7.7277 -1.0416 1.7818 33 1 6.0118 -0.6015 4.5987 34 1 5.1871 1.0370 4.4049 35 1 2.9443 -0.0312 4.9162 36 1 3.7683 -1.6696 5.1101 37 1 3.6318 2.8195 1.5005 38 1 5.0930 2.7140 0.4893 39 1 3.7497 4.7150 -0.0935 40 1 2.3494 3.6734 -0.4423 41 1 2.3056 4.5178 -2.7932 42 1 3.7059 5.5599 -2.4449 43 1 3.7671 4.4127 -3.8041 44 1 3.8960 1.9569 -3.3614 45 1 2.4344 2.0629 -2.3506 46 1 5.1780 1.1034 -1.4186 47 1 3.7778 0.0617 -1.7675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602883502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:02 Heat of formation + Delta-G solvation = -66.351363 kcal Electronic energy + Delta-G solvation = -26336.438735 eV Core-core repulsion = 22905.782606 eV Total energy + Delta-G solvation = -3430.656129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.91190 -38.19363 -36.79343 -35.92962 -34.42042 -31.77061 -30.80379 -30.27649 -27.80373 -26.29760 -25.18563 -23.81938 -22.73463 -22.31460 -20.94304 -20.11901 -19.44111 -18.91387 -16.99806 -16.37814 -16.00633 -15.73948 -15.19324 -14.64119 -14.25062 -14.12996 -14.03028 -13.77228 -13.47435 -13.13739 -12.83673 -12.59209 -12.32499 -12.19442 -11.99189 -11.92611 -11.64755 -11.53224 -11.32570 -11.07113 -10.86599 -10.74141 -10.69554 -10.68159 -10.51057 -10.41649 -10.17642 -10.00659 -9.69917 -9.39630 -9.27714 -8.83976 -8.23632 -7.99864 -7.38063 -5.84022 -3.93649 2.53862 3.03988 3.36537 3.42208 3.44839 4.50020 4.70838 4.82814 4.92810 5.09673 5.14276 5.24086 5.28702 5.31392 5.41083 5.44297 5.55918 5.62655 5.67746 5.74689 5.75214 5.84414 5.94189 5.99958 6.05150 6.19221 6.22425 6.32925 6.33470 6.42239 6.46920 6.48699 6.51894 6.55333 6.59084 6.70593 6.84873 6.94819 7.05929 7.24066 7.36170 7.69492 7.94278 8.01733 8.18733 8.40094 8.58898 9.06605 9.71296 11.21592 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.005907 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.998838 B = 4739.361505 C = 5098.361458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.439 3.561 4 O -0.515 6.515 5 C 0.132 3.868 6 N -0.619 5.619 7 C 0.103 3.897 8 C 0.047 3.953 9 C -0.505 4.505 10 H 0.053 0.947 11 C 0.092 3.908 12 N -0.849 5.849 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.282 1.282 17 C -0.143 4.143 18 C -0.220 4.220 19 C -0.090 4.090 20 C -0.140 4.140 21 C -0.090 4.090 22 H 0.069 0.931 23 C -0.144 4.144 24 C -0.115 4.115 25 C -0.105 4.105 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.360 0.640 30 H 0.005 0.995 31 H 0.049 0.951 32 H 0.256 0.744 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 6.640 -7.703 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.281 3.719 4 O -0.402 6.402 5 C 0.037 3.963 6 N -0.252 5.252 7 C -0.026 4.026 8 C 0.047 3.953 9 C -0.543 4.543 10 H 0.071 0.929 11 C -0.114 4.114 12 N -0.484 5.484 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.208 1.208 17 C -0.180 4.180 18 C -0.257 4.257 19 C -0.127 4.127 20 C -0.177 4.177 21 C -0.109 4.109 22 H 0.087 0.913 23 C -0.201 4.201 24 C -0.153 4.153 25 C -0.143 4.143 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.182 0.818 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.900 7.353 -7.668 12.668 hybrid contribution -0.796 -1.141 -0.490 1.474 sum -7.695 6.212 -8.158 12.820 Atomic orbital electron populations 1.23161 0.77659 1.03273 1.01814 1.86637 1.22511 1.34127 1.83646 1.26063 0.94262 0.80939 0.70650 1.90416 1.67735 1.35801 1.46281 1.21298 0.81820 0.96931 0.96243 1.60469 1.58027 1.05992 1.00679 1.21546 0.93632 0.98140 0.89323 1.18756 0.96714 0.95349 0.84510 1.20139 0.99983 0.95895 1.38307 0.92920 1.24804 0.96544 0.94866 0.95190 1.70008 1.04541 1.29347 1.44469 0.86935 0.77642 0.84208 0.80687 1.20218 1.21508 1.20792 1.22472 0.93031 0.96534 1.06004 1.23044 0.97792 1.00733 1.04169 1.21437 1.01858 0.90592 0.98857 1.22150 1.04387 0.97658 0.93530 1.21116 1.00165 0.94177 0.95397 0.91294 1.21799 1.00915 0.98514 0.98886 1.21643 1.00429 0.94609 0.98658 1.21566 1.02602 0.98826 0.91295 0.92510 0.88473 0.92328 0.81754 0.97665 0.93274 0.93426 0.89728 0.92470 0.92380 0.90606 0.91742 0.89754 0.92666 0.87986 0.92945 0.92940 0.93149 0.91738 0.92567 0.89066 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.35 -6.05 9.59 -39.25 -0.38 -6.42 16 3 C 0.44 7.74 4.27 36.01 0.15 7.90 16 4 O -0.51 -9.37 12.65 -18.74 -0.24 -9.61 16 5 C 0.13 2.30 0.69 -132.75 -0.09 2.21 16 6 N -0.62 -12.84 5.36 -101.14 -0.54 -13.38 16 7 C 0.10 2.24 5.20 -3.83 -0.02 2.22 16 8 C 0.05 1.14 2.00 -155.66 -0.31 0.83 16 9 C -0.51 -13.11 7.42 -34.44 -0.26 -13.37 16 10 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16 11 C 0.09 2.38 5.05 -17.82 -0.09 2.29 16 12 N -0.85 -22.76 12.29 55.43 0.68 -22.08 16 13 Si 0.88 20.33 29.54 -169.99 -5.02 15.31 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.14 -3.39 8.91 -26.73 -0.24 -3.63 16 18 C -0.22 -4.86 9.95 -26.73 -0.27 -5.13 16 19 C -0.09 -1.51 4.42 -26.73 -0.12 -1.63 16 20 C -0.14 -2.05 4.90 -26.73 -0.13 -2.18 16 21 C -0.09 -1.17 2.72 -90.62 -0.25 -1.41 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.14 -1.60 9.19 37.16 0.34 -1.25 16 24 C -0.12 -1.54 4.98 -26.73 -0.13 -1.68 16 25 C -0.11 -1.62 4.95 -26.73 -0.13 -1.76 16 26 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.36 7.92 7.37 -39.29 -0.29 7.63 16 30 H 0.01 0.12 6.78 -51.93 -0.35 -0.23 16 31 H 0.05 1.06 5.86 -51.93 -0.30 0.76 16 32 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 33 H 0.08 2.17 7.94 -51.93 -0.41 1.75 16 34 H 0.06 1.29 8.03 -51.93 -0.42 0.88 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.06 1.16 6.36 -51.93 -0.33 0.83 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.66 4.94 -51.97 -0.26 1.40 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.80 7.01 -51.93 -0.36 0.44 16 46 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -27.38 360.36 -8.73 -36.11 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -8.19 Total: 9.71 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.47 Total: -15.06 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.14 Total: -35.45 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.61 Total: -16.04 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.38 -8.73 -36.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602883502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.245 kcal (2) G-P(sol) polarization free energy of solvation -27.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds