Wall clock time and date at job start Tue Mar 31 2020 07:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99926 * 2 1 4 4 O 1.20819 * 120.00232 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99803 * 179.97438 * 3 2 1 6 6 N 1.46903 * 109.47217 * 319.81230 * 5 3 2 7 7 C 1.46895 * 110.99670 * 303.06774 * 6 5 3 8 8 C 1.53002 * 109.46912 * 185.43943 * 7 6 5 9 9 C 1.50698 * 115.56341 * 330.12732 * 8 7 6 10 10 H 1.08001 * 120.00135 * 269.20943 * 9 8 7 11 11 C 1.37879 * 120.00161 * 89.20809 * 9 8 7 12 12 N 1.31521 * 119.99867 * 4.80856 * 11 9 8 13 13 Si 1.86800 * 120.00403 * 184.80851 * 11 9 8 14 14 H 1.48506 * 109.46917 * 59.99927 * 13 11 9 15 15 H 1.48491 * 109.47096 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46882 * 299.99873 * 13 11 9 17 17 C 1.52999 * 117.49752 * 115.81608 * 8 7 6 18 18 C 1.52994 * 60.00070 * 107.48967 * 17 8 7 19 19 C 1.52992 * 109.47233 * 199.80995 * 5 3 2 20 20 C 1.53002 * 109.47169 * 299.99846 * 19 5 3 21 21 C 1.52992 * 109.47520 * 300.00195 * 20 19 5 22 22 H 1.08999 * 109.47108 * 300.00181 * 21 20 19 23 23 C 1.52999 * 109.47265 * 179.97438 * 21 20 19 24 24 C 1.53006 * 109.47093 * 59.99750 * 21 20 19 25 25 C 1.52999 * 109.46880 * 300.00009 * 24 21 20 26 26 H 1.09002 * 109.46879 * 59.99918 * 1 2 3 27 27 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47066 * 300.00399 * 1 2 3 29 29 H 1.00907 * 111.00088 * 67.01966 * 6 5 3 30 30 H 1.09001 * 109.47180 * 65.44205 * 7 6 5 31 31 H 1.08994 * 109.47560 * 305.43763 * 7 6 5 32 32 H 0.96999 * 120.00157 * 175.00227 * 12 11 9 33 33 H 1.09006 * 117.49852 * 214.97710 * 17 8 7 34 34 H 1.09002 * 117.50087 * 0.02562 * 17 8 7 35 35 H 1.08997 * 117.50185 * 252.50760 * 18 17 8 36 36 H 1.09003 * 117.51836 * 107.48006 * 18 17 8 37 37 H 1.08993 * 109.47266 * 60.00216 * 19 5 3 38 38 H 1.08999 * 109.47243 * 180.02562 * 19 5 3 39 39 H 1.09001 * 109.46992 * 179.97438 * 20 19 5 40 40 H 1.09003 * 109.46664 * 60.00681 * 20 19 5 41 41 H 1.08995 * 109.47270 * 299.99981 * 23 21 20 42 42 H 1.09002 * 109.47067 * 60.00494 * 23 21 20 43 43 H 1.09002 * 109.47256 * 179.97438 * 23 21 20 44 44 H 1.09002 * 109.47094 * 180.02562 * 24 21 20 45 45 H 1.08999 * 109.46792 * 60.00237 * 24 21 20 46 46 H 1.08995 * 109.47270 * 300.00115 * 25 24 21 47 47 H 1.09001 * 109.46730 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1104 0.2440 0.8947 7 6 3.5716 0.3883 2.2537 8 6 4.2601 -0.6122 3.1842 9 6 4.7217 -1.8920 2.5359 10 1 4.0645 -2.7484 2.5036 11 6 5.9828 -1.9694 1.9840 12 7 6.8171 -0.9601 2.1060 13 14 6.5065 -3.5079 1.0630 14 1 5.5964 -3.7288 -0.0895 15 1 7.8971 -3.3404 0.5700 16 1 6.4420 -4.6774 1.9760 17 6 5.1154 -0.0474 4.3202 18 6 3.7624 -0.6916 4.6287 19 6 4.0045 2.6568 0.4893 20 6 3.4380 3.7304 -0.4420 21 6 3.9611 3.5020 -1.8615 22 1 5.0496 3.5589 -1.8611 23 6 3.3940 4.5752 -2.7929 24 6 3.5229 2.1199 -2.3503 25 6 4.0896 1.0463 -1.4190 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.9325 -0.6804 0.5314 30 1 2.4990 0.1946 2.2417 31 1 3.7538 1.4017 2.6111 32 1 7.7277 -1.0416 1.7818 33 1 6.0118 -0.6015 4.5987 34 1 5.1871 1.0370 4.4049 35 1 2.9443 -0.0312 4.9162 36 1 3.7683 -1.6696 5.1101 37 1 3.6318 2.8195 1.5005 38 1 5.0930 2.7140 0.4893 39 1 3.7497 4.7150 -0.0935 40 1 2.3494 3.6734 -0.4423 41 1 2.3056 4.5178 -2.7932 42 1 3.7059 5.5599 -2.4449 43 1 3.7671 4.4127 -3.8041 44 1 3.8960 1.9569 -3.3614 45 1 2.4344 2.0629 -2.3506 46 1 5.1780 1.1034 -1.4186 47 1 3.7778 0.0617 -1.7675 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602883502.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:01 Heat of formation + Delta-G solvation = -79.775186 kcal Electronic energy + Delta-G solvation = -26337.020835 eV Core-core repulsion = 22905.782606 eV Total energy + Delta-G solvation = -3431.238229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25693 -39.47046 -38.53303 -37.27437 -35.83958 -33.77193 -32.06355 -31.57458 -28.95140 -27.75334 -26.99453 -25.29229 -23.97750 -23.61574 -22.79705 -21.27642 -20.79267 -20.72867 -18.34907 -17.95698 -17.40468 -17.34498 -16.56109 -16.46544 -15.86964 -15.40729 -15.22637 -15.17707 -14.87714 -14.53718 -14.32591 -13.81021 -13.65457 -13.60733 -13.35273 -13.17456 -13.07153 -12.96325 -12.76718 -12.71815 -12.54157 -12.30617 -12.21428 -11.98343 -11.88983 -11.81291 -11.70352 -11.39453 -11.12437 -10.92587 -10.73583 -10.67478 -10.19989 -9.84303 -9.01485 -7.84163 -5.98094 1.16162 1.51183 1.53901 1.58490 1.78494 2.56841 3.23395 3.43604 3.59139 3.63911 3.73956 3.92270 4.02717 4.13820 4.24244 4.26655 4.29378 4.37152 4.50446 4.54046 4.56339 4.61571 4.64035 4.72720 4.80559 4.83657 4.88485 4.98195 5.01681 5.03590 5.07058 5.07820 5.17438 5.23315 5.25652 5.35096 5.36382 5.40068 5.46868 5.55929 5.77946 5.81667 5.92858 6.37331 6.58892 6.71710 6.80132 7.05808 7.68906 9.20505 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.005907 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.998838 B = 4739.361505 C = 5098.361458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.441 3.559 4 O -0.523 6.523 5 C 0.129 3.871 6 N -0.629 5.629 7 C 0.116 3.884 8 C 0.025 3.975 9 C -0.515 4.515 10 H 0.042 0.958 11 C 0.061 3.939 12 N -0.870 5.870 13 Si 0.929 3.071 14 H -0.270 1.270 15 H -0.290 1.290 16 H -0.285 1.285 17 C -0.146 4.146 18 C -0.202 4.202 19 C -0.086 4.086 20 C -0.133 4.133 21 C -0.089 4.089 22 H 0.073 0.927 23 C -0.139 4.139 24 C -0.108 4.108 25 C -0.103 4.103 26 H 0.068 0.932 27 H 0.124 0.876 28 H 0.055 0.945 29 H 0.350 0.650 30 H 0.003 0.997 31 H 0.046 0.954 32 H 0.253 0.747 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.085 0.915 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 6.975 -9.068 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.284 3.716 4 O -0.412 6.412 5 C 0.035 3.965 6 N -0.261 5.261 7 C -0.013 4.013 8 C 0.024 3.976 9 C -0.553 4.553 10 H 0.060 0.940 11 C -0.143 4.143 12 N -0.505 5.505 13 Si 0.756 3.244 14 H -0.195 1.195 15 H -0.216 1.216 16 H -0.211 1.211 17 C -0.184 4.184 18 C -0.239 4.239 19 C -0.124 4.124 20 C -0.170 4.170 21 C -0.108 4.108 22 H 0.091 0.909 23 C -0.196 4.196 24 C -0.146 4.146 25 C -0.140 4.140 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.074 0.926 29 H 0.172 0.828 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.615 7.687 -9.034 14.096 hybrid contribution -0.632 -1.272 -0.018 1.420 sum -8.247 6.416 -9.053 13.825 Atomic orbital electron populations 1.23467 0.75479 1.05265 1.02266 1.86606 1.24739 1.33750 1.83400 1.25851 0.94178 0.81064 0.70532 1.90419 1.67941 1.36022 1.46772 1.21373 0.82217 0.96139 0.96802 1.60415 1.58824 1.06147 1.00694 1.21327 0.93140 0.97162 0.89681 1.18965 0.97630 0.95463 0.85545 1.20262 1.00058 0.96311 1.38622 0.93965 1.25254 0.96495 0.96924 0.95629 1.70111 1.04514 1.30684 1.45218 0.86114 0.77170 0.81360 0.79741 1.19461 1.21632 1.21113 1.22320 0.92836 0.96640 1.06576 1.23041 0.97356 1.00864 1.02664 1.21399 1.01245 0.91179 0.98604 1.22070 1.03328 0.97298 0.94315 1.21124 1.00428 0.94635 0.94598 0.90897 1.21750 1.00544 0.98126 0.99196 1.21611 0.99762 0.94032 0.99215 1.21571 1.02250 0.99751 0.90474 0.91366 0.85810 0.92580 0.82844 0.97904 0.93536 0.93754 0.92164 0.91782 0.90101 0.90725 0.93438 0.90640 0.91549 0.89312 0.93380 0.92088 0.91600 0.89483 0.93392 0.89599 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.37 -12.33 9.59 -51.37 -0.49 -12.82 16 3 C 0.44 15.32 4.27 71.24 0.30 15.63 16 4 O -0.52 -18.68 12.65 21.99 0.28 -18.41 16 5 C 0.13 4.47 0.69 2.78 0.00 4.47 16 6 N -0.63 -26.23 5.36 -473.90 -2.54 -28.77 16 7 C 0.12 5.08 5.20 86.30 0.45 5.53 16 8 C 0.02 1.18 2.00 -52.93 -0.11 1.08 16 9 C -0.51 -26.81 7.42 25.60 0.19 -26.62 16 10 H 0.04 2.24 7.82 -2.91 -0.02 2.22 16 11 C 0.06 3.17 5.05 84.65 0.43 3.59 16 12 N -0.87 -46.98 12.29 21.45 0.26 -46.72 16 13 Si 0.93 41.69 29.54 68.60 2.03 43.72 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 C -0.15 -6.96 8.91 30.59 0.27 -6.69 16 18 C -0.20 -8.78 9.95 30.59 0.30 -8.48 16 19 C -0.09 -2.90 4.42 30.59 0.14 -2.76 16 20 C -0.13 -3.74 4.90 30.59 0.15 -3.59 16 21 C -0.09 -2.14 2.72 -10.79 -0.03 -2.17 16 22 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 23 C -0.14 -2.71 9.19 71.98 0.66 -2.05 16 24 C -0.11 -2.69 4.98 30.60 0.15 -2.54 16 25 C -0.10 -3.08 4.95 30.60 0.15 -2.93 16 26 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.35 15.53 7.37 -89.69 -0.66 14.87 16 30 H 0.00 0.13 6.78 -2.39 -0.02 0.12 16 31 H 0.05 2.03 5.86 -2.39 -0.01 2.02 16 32 H 0.25 13.36 8.32 -92.71 -0.77 12.59 16 33 H 0.06 3.14 7.94 -2.38 -0.02 3.12 16 34 H 0.06 2.91 8.03 -2.39 -0.02 2.89 16 35 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.05 1.72 6.36 -2.39 -0.02 1.71 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 2.80 4.94 -3.12 -0.02 2.79 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.28 7.01 -2.39 -0.02 1.27 16 46 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 47 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -57.52 360.36 4.08 -53.44 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.28 Total: 35.17 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 4.26 Total: -25.63 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.28 Total: -75.48 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.21 Total: -31.23 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -57.52 4.08 -53.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602883502.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.331 kcal (2) G-P(sol) polarization free energy of solvation -57.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds