Wall clock time and date at job start Tue Mar 31 2020 08:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99704 * 2 1 4 4 C 1.53005 * 109.47156 * 150.00279 * 3 2 1 5 5 C 1.52995 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46842 * 299.99938 * 5 4 3 7 7 C 1.50702 * 109.46954 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99831 * 326.53897 * 7 6 5 9 9 N 1.34775 * 120.00181 * 146.53889 * 7 6 5 10 10 C 1.46501 * 119.99755 * 3.96495 * 9 7 6 11 11 C 1.50702 * 109.47060 * 84.11648 * 10 9 7 12 12 H 1.08000 * 119.99683 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99633 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00693 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99549 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47464 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47168 * 120.00208 * 15 13 11 18 18 H 1.48496 * 109.47558 * 239.99959 * 15 13 11 19 19 C 1.46502 * 120.00145 * 183.96834 * 9 7 6 20 20 C 1.53000 * 109.46657 * 271.35954 * 19 9 7 21 21 C 1.53001 * 117.49920 * 243.61899 * 20 19 9 22 22 C 1.53002 * 117.49454 * 174.99546 * 20 19 9 23 23 C 1.52998 * 109.47145 * 60.00370 * 6 5 4 24 24 C 1.52998 * 109.47280 * 270.00008 * 3 2 1 25 25 H 1.08998 * 109.46607 * 299.99574 * 1 2 3 26 26 H 1.08998 * 109.47293 * 60.00166 * 1 2 3 27 27 H 1.08994 * 109.46764 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47456 * 30.00116 * 3 2 1 29 29 H 1.08999 * 109.47072 * 59.99601 * 4 3 2 30 30 H 1.09007 * 109.46739 * 300.00317 * 4 3 2 31 31 H 1.09000 * 109.46988 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47454 * 59.99714 * 5 4 3 33 33 H 1.08993 * 109.47270 * 299.99861 * 6 5 4 34 34 H 1.08995 * 109.47156 * 324.11525 * 10 9 7 35 35 H 1.09005 * 109.46686 * 204.11383 * 10 9 7 36 36 H 0.96999 * 120.00426 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47060 * 31.36131 * 19 9 7 38 38 H 1.09000 * 109.47161 * 151.36474 * 19 9 7 39 39 H 1.08995 * 115.55187 * 29.33561 * 20 19 9 40 40 H 1.08991 * 117.49634 * 0.02562 * 21 20 19 41 41 H 1.08996 * 117.49373 * 145.02673 * 21 20 19 42 42 H 1.09004 * 117.50105 * 214.97497 * 22 20 19 43 43 H 1.08999 * 117.50341 * 0.02562 * 22 20 19 44 44 H 1.08993 * 109.47453 * 59.99602 * 23 6 5 45 45 H 1.09002 * 109.46787 * 180.02562 * 23 6 5 46 46 H 1.09001 * 109.47556 * 299.99949 * 24 3 2 47 47 H 1.09000 * 109.47301 * 60.00205 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3590 1.2634 0.7212 5 6 3.9809 2.6612 0.7218 6 6 4.1882 3.1277 -0.7206 7 6 4.8014 4.5043 -0.7200 8 8 4.5193 5.2935 0.1567 9 7 5.6634 4.8585 -1.6937 10 6 5.9376 3.9378 -2.7997 11 6 4.8750 4.0923 -3.8572 12 1 4.0757 4.8053 -3.7193 13 6 4.9240 3.3241 -5.0010 14 7 5.8981 2.4569 -5.1696 15 14 3.6065 3.5151 -6.3114 16 1 2.6302 4.5496 -5.8847 17 1 4.2371 3.9281 -7.5909 18 1 2.9050 2.2200 -6.5007 19 6 6.3261 6.1642 -1.6460 20 6 5.4540 7.2047 -2.3514 21 6 6.0205 7.8652 -3.6099 22 6 5.9181 8.6620 -2.3077 23 6 2.8395 3.1700 -1.4417 24 6 2.2176 1.7714 -1.4425 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.3450 1.9994 0.5138 29 1 4.0242 0.5694 0.2074 30 1 3.2112 0.9313 1.7489 31 1 4.9416 2.6312 1.2360 32 1 3.3155 3.3548 1.2359 33 1 4.8536 2.4342 -1.2347 34 1 5.9345 2.9130 -2.4286 35 1 6.9132 4.1659 -3.2290 36 1 5.9323 1.9162 -5.9742 37 1 6.4745 6.4586 -0.6071 38 1 7.2920 6.0999 -2.1471 39 1 4.3807 7.0173 -2.3207 40 1 7.0143 7.5581 -3.9355 41 1 5.3198 8.1122 -4.4074 42 1 5.1501 9.4333 -2.2487 43 1 6.8449 8.8794 -1.7768 44 1 2.1741 3.8634 -0.9276 45 1 2.9873 3.5019 -2.4694 46 1 2.8829 1.0776 -1.9564 47 1 1.2568 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614822497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:29 Heat of formation + Delta-G solvation = -78.983399 kcal Electronic energy + Delta-G solvation = -25479.795580 eV Core-core repulsion = 22048.591685 eV Total energy + Delta-G solvation = -3431.203895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79762 -38.43775 -36.93927 -35.64781 -34.64042 -32.46904 -30.49661 -30.06595 -27.81852 -26.65044 -25.86029 -23.12492 -22.41169 -22.18608 -21.94049 -20.40363 -19.69162 -18.11413 -16.58825 -16.45848 -16.23197 -15.85555 -15.41541 -14.99370 -14.64525 -14.42792 -14.30920 -13.70630 -13.44426 -13.08575 -13.01675 -12.64388 -12.39240 -12.08571 -11.90838 -11.78686 -11.71083 -11.50492 -11.26400 -11.12191 -11.03880 -10.92832 -10.81726 -10.72474 -10.60165 -10.25336 -10.14835 -9.94045 -9.91030 -9.66984 -9.38839 -9.17541 -8.84560 -8.51213 -7.71070 -6.17447 -4.22060 3.20456 3.29914 3.31841 3.43483 3.82653 3.94387 4.30714 4.37040 4.96925 5.05004 5.15082 5.16848 5.25780 5.31968 5.36558 5.38967 5.46209 5.52997 5.53263 5.65198 5.66257 5.74755 5.82834 5.87773 5.89477 5.95372 6.09801 6.18971 6.20294 6.25000 6.32056 6.32176 6.37328 6.49787 6.52795 6.55011 6.68097 6.77671 6.87188 6.93732 7.22179 7.35625 7.57472 7.78251 8.08129 8.35766 8.81931 9.06641 9.43950 10.89645 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.006025 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.880460 B = 4646.239886 C = 6203.770215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.088 3.912 4 C -0.112 4.112 5 C -0.099 4.099 6 C -0.100 4.100 7 C 0.523 3.477 8 O -0.575 6.575 9 N -0.594 5.594 10 C 0.237 3.763 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.282 1.282 19 C 0.153 3.847 20 C -0.142 4.142 21 C -0.169 4.169 22 C -0.189 4.189 23 C -0.107 4.107 24 C -0.134 4.134 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.039 0.961 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 0.515 7.406 8.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.031 3.969 4 C -0.149 4.149 5 C -0.137 4.137 6 C -0.121 4.121 7 C 0.311 3.689 8 O -0.457 6.457 9 N -0.323 5.323 10 C 0.117 3.883 11 C -0.562 4.562 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.529 5.529 15 Si 0.715 3.285 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.208 1.208 19 C 0.029 3.971 20 C -0.162 4.162 21 C -0.206 4.206 22 C -0.227 4.227 23 C -0.144 4.144 24 C -0.172 4.172 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.290 0.608 7.707 8.842 hybrid contribution -0.928 0.259 -1.169 1.515 sum -5.218 0.866 6.538 8.410 Atomic orbital electron populations 1.22728 0.81759 1.02203 0.99781 1.87893 1.19099 1.28593 1.95131 1.22260 0.94737 0.83631 0.96264 1.21563 0.95392 0.97790 1.00187 1.21364 1.01109 0.95331 0.95860 1.21250 0.98804 0.95074 0.96974 1.20483 0.78477 0.89179 0.80741 1.90577 1.62168 1.53914 1.38993 1.48247 1.42584 1.16868 1.24641 1.19486 0.97301 0.88290 0.83193 1.21432 1.10405 1.21679 1.02654 0.91963 1.24880 0.95742 0.95027 0.97941 1.69915 1.31503 1.23748 1.27742 0.86597 0.81939 0.78104 0.81830 1.19692 1.20963 1.20836 1.20828 0.94073 0.82490 0.99673 1.22607 1.00489 0.92472 1.00608 1.22905 1.02430 1.03966 0.91343 1.22925 1.02745 0.94843 1.02196 1.21501 0.93781 0.95854 1.03308 1.21980 1.01269 0.97810 0.96115 0.94410 0.94125 0.90081 0.92475 0.90924 0.91642 0.91659 0.91140 0.88171 0.94358 0.94751 0.92661 0.91041 0.91080 0.88067 0.88954 0.89378 0.89522 0.89307 0.92709 0.88126 0.90498 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.45 16 2 O -0.39 -5.65 10.35 -35.23 -0.36 -6.01 16 3 C 0.09 1.28 2.61 -26.73 -0.07 1.21 16 4 C -0.11 -1.58 5.57 -26.73 -0.15 -1.73 16 5 C -0.10 -1.54 4.84 -26.73 -0.13 -1.67 16 6 C -0.10 -1.81 1.95 -91.77 -0.18 -1.99 16 7 C 0.52 10.69 6.63 -10.99 -0.07 10.62 16 8 O -0.58 -12.79 15.88 5.55 0.09 -12.71 16 9 N -0.59 -12.18 2.47 -175.06 -0.43 -12.61 16 10 C 0.24 5.39 5.00 -5.19 -0.03 5.37 16 11 C -0.52 -12.80 7.52 -34.44 -0.26 -13.06 16 12 H 0.06 1.57 7.35 -52.49 -0.39 1.19 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -23.83 13.29 55.43 0.74 -23.09 16 15 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.15 2.81 5.69 -4.04 -0.02 2.79 16 20 C -0.14 -2.53 6.01 -90.62 -0.54 -3.08 16 21 C -0.17 -2.71 10.18 -26.73 -0.27 -2.99 16 22 C -0.19 -2.75 10.25 -26.73 -0.27 -3.03 16 23 C -0.11 -1.90 5.19 -26.70 -0.14 -2.04 16 24 C -0.13 -2.14 5.54 -26.70 -0.15 -2.29 16 25 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 26 H 0.04 0.43 7.87 -51.93 -0.41 0.03 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.13 7.85 -51.93 -0.41 0.73 16 33 H 0.10 1.92 5.85 -51.93 -0.30 1.62 16 34 H 0.04 0.91 5.93 -51.93 -0.31 0.60 16 35 H 0.03 0.83 7.81 -51.93 -0.41 0.42 16 36 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 38 H 0.07 1.22 7.57 -51.93 -0.39 0.83 16 39 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 40 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.10 2.05 5.66 -51.93 -0.29 1.76 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -27.58 371.04 -9.00 -36.59 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.31 Total: 5.96 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.29 Total: -8.84 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.30 Total: -35.71 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.28 Total: -18.72 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.58 -9.00 -36.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614822497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.398 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds